Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L2T	0814	2023-08-13	2019-10-06	4.1	4.14	—	4.2	0.003	0.61	0.0	0.05	12.33	0.00	2.222	5.89	0.15	13.8	86.0	0.2	-5.72	0.61	0.76	—	4.2	0.005	0.77	0.0	0.05	12.54	0.01	2.083	8.68	0.00	17.6	82.3	0.1	-4.18	0.52	0.61	0.77	—	13604	1889	3	0	0	0	0	logfile
✔	7JLX	22383	2023-08-09	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6RTB	4996	2023-08-09	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.004	0.76	0.0	0.05	15.59	0.00	2.167	12.95	1.53	17.5	82.5	0.0	-4.08	0.60	0.62	0.80	3.79	4681	699	10	0	0	0	0	logfile
✔	7XiZ	33213	2023-08-09	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	17.48	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.81	0.0	0.05	17.83	0.01	2.218	16.22	1.70	16.6	82.6	0.8	-3.61	1.54	0.37	0.74	1.40	2161	267	1	0	2	0	0	logfile
✔	8D1B	27121	2023-08-10	2022-05-27	3.57	3.85	3.45	3.8	0.006	1.09	0.0	0.05	14.42	0.01	2.084	19.71	0.28	24.1	75.9	0.0	-6.32	0.76	0.81	2.61	3.8	0.004	0.86	0.0	0.04	16.37	0.01	2.120	12.64	0.42	17.4	82.6	0.0	-4.80	2.74	0.72	0.78	2.09	6724	874	4	0	0	0	0	logfile
✔	6i0Y	0322	2023-08-22	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.02	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.007	0.91	0.0	0.04	16.58	0.01	0.967	25.22	1.81	15.5	82.6	1.9	-3.22	1.65	0.61	0.74	0.89	93619	3551	48	3049	144	439	0	logfile
✔	6Z7Q	11112	2023-08-14	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.005	0.92	0.0	0.05	16.92	0.00	2.170	21.04	0.91	17.3	82.6	0.0	-4.35	1.20	0.75	0.83	1.27	16665	2080	5	0	0	0	0	logfile
✔	6RT0	4994	2023-08-09	2019-05-22	3.1	3.18	—	3.1	0.006	0.97	0.0	0.06	14.23	0.00	2.415	2.11	1.06	11.5	88.5	0.0	-3.76	0.71	0.84	6.51	3.1	0.009	0.89	0.0	0.06	16.41	0.00	2.255	5.41	0.43	17.4	82.6	0.0	-4.13	0.82	0.72	0.86	5.76	4925	735	10	0	0	0	0	logfile
✔	8E5F	27911	2023-08-12	2022-08-22	3.8	4.11	3.84	4.0	0.017	1.17	0.0	0.06	16.51	0.01	2.029	22.93	0.00	12.7	87.3	0.0	-2.96	0.71	0.84	3.52	4.1	0.007	0.96	1.0	0.05	16.96	0.00	2.120	12.79	0.60	17.3	82.7	0.1	-3.44	0.48	0.72	0.86	3.46	11890	1465	5	0	20	0	0	logfile
✔	7Ri4	24473	2023-08-12	2021-07-19	3.4	3.80	—	3.7	0.003	0.74	0.0	0.04	17.06	0.00	2.238	9.59	3.70	13.8	86.0	0.2	-5.39	0.71	0.77	0.92	3.7	0.004	0.79	0.0	0.05	17.86	0.00	2.141	12.80	0.77	17.2	82.7	0.1	-3.47	0.52	0.72	0.81	1.76	12248	1578	6	0	0	0	0	logfile
✔	6H6B	0148	2023-08-10	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.2	0.004	0.89	0.0	0.18	11.48	0.00	2.140	5.82	0.25	17.3	82.7	0.0	-3.87	1.82	0.40	0.77	3.76	8060	580	10	0	0	0	4100	logfile
✔	3JD6	6425	2023-08-25	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	32.0	0.12	14.71	0.02	1.693	5.06	0.00	13.3	86.1	0.6	-3.14	0.60	0.42	—	4.3	0.004	0.73	0.0	0.04	13.73	0.00	1.904	14.36	0.00	17.3	82.7	0.0	-2.33	2.17	0.85	0.80	—	43088	2672	16	0	0	0	21216	logfile
✔	6BX3	7303	2023-08-11	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.11	0.00	2.070	24.58	0.00	17.2	82.7	0.1	-3.48	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	6ACC	9588	2023-08-18	2018-07-26	3.6	3.90	—	3.8	0.005	0.95	1.0	0.06	9.62	0.01	2.139	6.04	0.43	12.0	87.4	0.6	-4.74	0.69	0.73	1.40	3.8	0.009	0.92	0.0	0.05	14.50	0.01	2.081	18.43	0.65	16.9	82.8	0.3	-3.14	0.87	0.72	0.76	1.86	24906	3195	3	0	0	0	0	logfile
✔	7SSW	25415	2023-08-30	2021-11-11	3.8	3.98	4.43	3.9	0.008	1.03	0.0	0.09	15.74	0.01	1.525	13.50	0.87	14.4	85.2	0.4	-5.23	0.77	0.73	0.84	3.9	0.008	0.97	0.0	0.05	18.08	0.01	1.899	33.29	1.77	16.9	82.8	0.2	-3.69	1.33	0.78	0.74	0.76	147596	5885	56	4736	0	0	0	logfile
✔	6SST	10305	2023-08-09	2019-09-09	3.4	3.46	—	3.4	0.009	0.94	0.0	0.07	16.79	0.00	2.430	5.73	2.13	10.1	89.9	0.0	-4.47	0.56	0.80	6.33	3.4	0.008	0.76	0.0	0.06	14.95	0.00	2.266	10.97	0.43	17.2	82.8	0.0	-4.97	0.49	0.59	0.84	4.82	4900	730	10	0	0	0	0	logfile
✔	8E14	27823	2023-08-12	2022-08-09	3.36	4.87	3.36	3.5	0.007	1.12	1.0	0.08	24.71	0.01	2.182	16.48	0.41	17.7	82.3	0.0	-2.84	0.92	0.86	0.70	3.5	0.003	0.70	0.0	0.04	24.61	0.00	2.177	15.59	0.31	17.1	82.9	0.0	-2.52	0.32	0.92	0.86	0.85	12442	1161	16	160	2	0	0	logfile
✔	7BoY	30136	2023-08-24	2020-03-20	3.8	3.79	—	3.8	0.008	1.49	0.0	0.07	12.88	0.01	1.717	15.08	1.21	16.1	82.7	1.1	-5.15	0.84	0.83	2.69	3.9	0.004	0.94	0.0	0.05	15.70	0.00	2.016	20.36	0.41	16.7	83.0	0.3	-3.73	1.57	0.85	0.84	2.20	37794	4740	6	0	0	0	0	logfile
✔	6L1U	0803	2023-08-11	2019-09-30	3.37	3.54	—	3.5	0.011	0.90	0.0	0.06	15.32	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.5	0.007	0.76	0.0	0.05	16.50	0.00	2.159	13.05	1.18	17.0	83.0	0.0	-4.98	1.98	0.48	0.85	2.64	10515	1500	15	0	0	0	0	logfile
✔	3J7Z	6057	2023-08-22	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.09	16.03	0.01	1.426	11.65	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	3.8	0.007	0.95	0.0	0.05	16.34	0.01	1.992	19.79	1.72	15.0	83.0	2.0	-3.38	1.87	0.79	0.80	0.94	90700	3453	36	2975	1	0	0	logfile

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