Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MEP	23801	2023-08-16	2021-04-07	3.5	3.58	3.45	3.5	0.024	1.74	0.0	0.14	10.44	0.01	2.293	0.94	0.00	1.5	98.5	0.0	0.77	0.71	0.85	3.66	3.5	0.003	0.64	0.0	0.05	15.00	0.00	2.063	7.03	0.35	2.8	97.2	0.0	0.51	1.93	0.70	0.85	2.65	21636	2596	35	0	90	0	0	logfile
✔	7SL1	25188	2023-08-19	2021-10-22	3.4	3.69	—	3.6	0.002	0.60	0.0	0.04	13.62	0.00	2.186	10.54	0.00	7.8	92.0	0.2	-1.04	0.80	0.79	3.27	3.5	0.003	0.62	0.0	0.04	15.46	0.00	2.117	12.23	0.06	8.2	91.8	0.0	-1.07	0.43	0.82	0.85	2.91	13830	1714	6	0	0	0	0	logfile
✔	7L88	23225	2023-08-14	2020-12-31	3.6	3.68	3.49	3.6	0.022	1.73	5.0	0.15	9.94	0.01	2.004	2.37	0.00	2.3	97.7	0.0	0.89	0.71	0.83	3.75	3.6	0.004	0.65	0.0	0.04	14.85	0.00	2.121	7.07	0.20	3.5	96.5	0.0	-0.34	1.25	0.71	0.84	3.07	15634	1677	43	0	314	0	0	logfile
✔	7ZPM	14858	2023-08-15	2022-04-27	2.81	3.56	2.81	3.0	0.002	0.49	0.0	0.04	13.14	0.00	1.820	6.91	0.14	3.5	96.4	0.1	-0.23	0.93	0.88	3.42	3.0	0.003	0.68	0.0	0.04	15.22	0.00	2.137	9.74	1.07	3.4	96.5	0.0	0.72	1.06	0.93	0.91	3.15	19330	2412	6	0	0	0	0	logfile
✔	8HAJ	34592	2023-08-14	2022-10-26	4.8	4.66	4.63	3.6	0.003	0.60	0.0	0.03	24.95	0.00	2.213	11.34	0.00	2.3	97.7	0.0	1.21	0.88	0.76	—	3.6	0.004	0.62	0.0	0.04	26.56	0.00	2.114	18.46	0.00	2.8	97.2	0.0	1.45	1.61	0.90	0.79	—	17214	1305	11	326	0	0	0	logfile
✔	8G9o	29873	2023-08-15	2023-02-21	4.4	5.72	4.20	4.0	0.008	0.58	0.0	0.04	19.41	0.00	2.042	4.86	0.00	4.7	95.3	0.0	1.15	0.88	0.74	—	4.0	0.003	0.56	0.0	0.04	16.75	0.00	1.541	11.82	0.00	4.2	95.8	0.0	0.32	0.99	0.91	0.81	—	18504	1054	7	46	5	0	9023	logfile
✔	7WK2	32556	2023-08-18	2022-01-08	3.1	2.76	—	3.3	0.006	0.84	0.0	0.05	8.84	0.01	1.531	3.68	0.22	3.9	95.9	0.2	-3.00	0.72	0.68	1.17	3.3	0.005	0.79	0.0	0.05	14.91	0.00	2.124	12.06	0.76	4.0	96.0	0.0	-0.56	1.64	0.81	0.80	2.30	24879	3171	3	0	0	0	0	logfile
✔	8AGB	15419	2023-08-14	2022-07-19	3.0	3.37	3.14	3.3	0.006	1.01	0.0	0.05	17.23	0.01	2.052	8.32	6.03	5.6	94.3	0.1	-3.13	0.74	0.88	3.36	3.3	0.002	0.63	0.0	0.04	16.91	0.00	2.096	6.68	3.13	3.8	96.2	0.0	0.43	0.56	0.71	0.88	3.38	17202	2073	17	0	33	0	0	logfile
✔	7TCP	25816	2023-08-13	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.003	0.50	0.0	0.04	12.75	0.00	2.113	5.39	0.60	3.3	96.7	0.0	2.51	0.36	0.71	0.83	2.44	14992	1912	12	0	12	0	0	logfile
✔	7RZF	24758	2023-08-14	2021-08-27	3.4	2.25	—	3.5	0.009	1.19	1.0	0.07	12.93	0.01	1.454	14.43	0.41	4.2	95.8	0.0	-4.07	0.65	0.74	2.52	3.5	0.003	0.70	0.0	0.04	15.52	0.00	2.195	10.95	0.12	3.9	96.1	0.0	-0.67	4.10	0.66	0.76	1.75	15584	1902	4	0	0	0	0	logfile
✔	8E2J	27838	2023-08-09	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.53	0.0	0.03	17.85	0.00	1.995	13.05	0.00	1.2	98.8	0.0	3.38	1.71	0.45	0.67	1.22	6012	346	4	0	114	0	2694	logfile
✔	6W6H	21555	2023-08-20	2020-03-16	3.3	3.65	—	3.5	0.004	0.77	0.0	0.04	15.48	0.00	0.962	9.97	1.39	9.9	89.9	0.2	-4.10	0.84	0.85	2.13	3.5	0.003	0.65	0.0	0.04	16.77	0.00	2.179	8.28	0.92	9.1	90.9	0.0	-1.23	1.21	0.83	0.87	1.92	28427	3615	13	0	38	0	0	logfile
✔	7X9W	33084	2023-08-11	2022-03-16	2.78	2.90	2.88	2.9	0.008	0.84	12.0	0.06	15.86	0.01	2.241	6.77	6.86	3.8	96.2	0.0	-2.46	0.78	0.83	3.91	2.9	0.004	0.64	0.0	0.05	17.40	0.00	2.071	7.90	3.56	2.1	97.9	0.0	-0.73	0.46	0.77	0.84	4.17	59640	7368	72	0	24	48	0	logfile
✔	7JM9	22390	2023-08-26	2020-07-31	2.5	2.71	2.65	2.7	0.009	1.47	0.0	0.07	13.53	0.00	2.291	3.08	0.56	1.1	98.9	0.0	0.10	0.62	0.82	5.25	2.7	0.002	0.46	0.0	0.04	13.56	0.00	2.082	6.14	1.18	1.3	98.7	0.0	3.53	0.72	0.63	0.85	4.52	41136	2328	36	0	168	156	18876	logfile
✔	7RYY	24748	2023-08-14	2021-08-26	4.4	3.68	—	7.0	0.005	1.01	0.0	0.05	11.37	0.01	2.230	5.96	0.59	3.6	96.4	0.0	-4.08	0.63	0.51	—	3.5	0.004	0.81	0.0	0.04	12.68	0.01	2.124	19.08	0.00	5.4	94.6	0.0	-0.19	1.82	0.72	0.73	—	15836	2024	8	0	2	0	0	logfile
✔	7WK6	32560	2023-08-09	2022-01-08	3.67	2.86	—	3.8	0.008	1.07	1.0	0.07	15.40	0.01	2.328	5.81	0.57	4.7	94.9	0.4	-5.05	0.77	0.77	2.23	3.7	0.007	0.94	0.0	0.05	17.87	0.00	2.115	21.26	0.86	5.1	94.9	0.0	-1.19	1.42	0.79	0.79	1.73	6428	791	2	0	0	0	0	logfile
✔	6SKL	10227	2023-08-14	2019-08-16	3.7	3.87	—	3.7	0.013	1.93	50.0	0.11	15.18	0.02	1.901	0.27	0.09	3.3	96.7	0.0	-1.69	0.71	0.72	1.97	3.7	0.004	0.63	0.0	0.04	16.54	0.00	1.787	8.63	0.19	4.0	96.0	0.0	0.38	3.48	0.74	0.78	1.67	118181	7251	24	59	11	0	58997	logfile
✔	6KPi	0747	2023-08-11	2019-08-15	2.43	3.50	—	3.0	0.008	0.67	0.0	0.06	11.99	0.00	1.974	5.19	0.00	7.1	92.9	0.0	-4.39	0.85	0.88	4.58	3.0	0.005	0.78	3.0	0.13	14.43	0.00	1.988	5.83	0.62	3.5	96.5	0.0	1.23	0.72	0.85	0.89	4.30	62209	3936	24	0	24	0	31225	logfile
✔	7AUA	11926	2023-08-12	2020-11-02	2.93	3.12	—	3.1	0.008	0.64	0.0	0.05	12.69	0.00	1.809	1.92	0.00	3.7	96.3	0.0	-0.20	0.79	0.85	4.78	3.1	0.003	0.55	0.0	0.04	14.95	0.00	2.148	4.70	1.07	2.1	97.9	0.0	0.47	2.19	0.81	0.89	3.57	11300	1372	8	2	14	0	0	logfile
✔	7WVo	32855	2023-08-17	2022-02-10	3.41	2.96	—	3.5	0.006	0.83	0.0	0.05	8.31	0.01	2.354	2.02	0.08	3.7	96.2	0.1	-3.17	0.72	0.68	0.86	3.5	0.003	0.75	0.0	0.05	14.52	0.00	2.128	11.26	0.31	2.7	97.3	0.0	-0.26	1.66	0.79	0.78	1.57	23188	2961	3	0	0	0	0	logfile

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