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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FVX | 4323 | 2024-04-06 | 2018-03-05 | 4.9 | 4.97 | — | 4.9 | 0.036 | 3.46 | 834.0 | 0.21 | 17.38 | 0.03 | 1.000 | 2.06 | 2.81 | 5.4 | 92.9 | 1.7 | -2.42 | 0.52 | 0.59 | — | 4.9 | 0.004 | 0.83 | 0.0 | 0.05 | 14.61 | 0.00 | 1.899 | 20.44 | 0.02 | 4.6 | 95.3 | 0.2 | -0.67 | 1.27 | 0.55 | 0.77 | — | 110471 | 14020 | 53 | 0 | 12 | 0 | 0 | logfile |
✘ | 8DDS | 27340 | 2024-04-14 | 2022-06-18 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 6DQJ | 7978 | 2024-04-13 | 2018-06-11 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138477 | 8724 | 8 | 0 | 4 | 0 | 69265 | logfile |
✔ | 7SYN | 25534 | 2024-04-11 | 2021-11-25 | 4.0 | 3.26 | 3.82 | 3.2 | 0.002 | 0.49 | 0.0 | 0.03 | 21.99 | 0.00 | 2.115 | 9.69 | 0.00 | 4.8 | 95.2 | 0.0 | -0.83 | 0.64 | 0.72 | — | 3.2 | 0.005 | 0.70 | 1.0 | 0.04 | 22.42 | 0.01 | 1.745 | 13.08 | 3.70 | 8.4 | 91.6 | 0.0 | -1.28 | 1.03 | 0.65 | 0.74 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✘ | 7LiA | 23365 | 2024-04-05 | 2021-01-26 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6279 | 767 | 5 | 0 | 27 | 0 | 0 | logfile |
✘ | 7UNC | 26620 | 2024-04-05 | 2022-04-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105726 | 7924 | 38 | 311 | 9 | 0 | 48096 | logfile |
✘ | 7S4L | 24830 | 2024-04-16 | 2021-09-09 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21153 | 2556 | 21 | 0 | 36 | 3 | 0 | logfile |
✘ | 6L35 | 0821 | 2024-04-15 | 2019-10-09 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34822 | 3260 | 30 | 0 | 205 | 0 | 0 | logfile |
✔ | 5MPE | 3535 | 2024-04-16 | 2016-12-16 | 4.5 | 4.55 | — | 4.5 | 0.034 | 3.32 | 297.0 | 0.19 | 17.16 | 0.03 | 1.158 | 3.96 | 2.25 | 5.2 | 92.6 | 2.2 | -1.86 | 0.28 | 0.39 | — | 4.5 | 0.003 | 0.81 | 0.0 | 0.04 | 14.85 | 0.00 | 2.037 | 19.65 | 0.09 | 5.9 | 93.8 | 0.3 | -0.74 | 2.46 | 0.35 | 0.67 | — | 40974 | 5142 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 5T9V | 8376 | 2024-04-09 | 2016-09-09 | 4.4 | 4.79 | 4.75 | 4.5 | 0.004 | 0.90 | 4.0 | 0.05 | 10.07 | 0.01 | 1.374 | 5.64 | 0.54 | 10.5 | 89.3 | 0.2 | -4.84 | 0.81 | 0.78 | — | 4.5 | 0.003 | 0.71 | 0.0 | 0.04 | 11.72 | 0.00 | 2.096 | 15.86 | 0.00 | 10.8 | 89.0 | 0.1 | -1.39 | 0.83 | 0.82 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 6D3R | 7793 | 2024-04-06 | 2018-04-16 | 4.3 | 4.80 | 4.40 | 4.5 | 0.017 | 1.75 | 0.0 | 0.10 | 11.89 | 0.01 | 2.385 | 0.57 | 0.00 | 1.5 | 98.5 | 0.0 | 0.66 | 0.66 | 0.76 | — | 4.5 | 0.003 | 0.65 | 0.0 | 0.04 | 12.65 | 0.00 | 2.221 | 7.99 | 0.00 | 2.3 | 97.7 | 0.0 | 1.82 | 1.21 | 0.68 | 0.78 | — | 7610 | 1127 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 5TAZ | 8390 | 2024-04-09 | 2016-09-10 | 4.3 | 4.46 | 4.86 | 4.3 | 0.004 | 0.86 | 4.0 | 0.05 | 9.92 | 0.01 | 1.373 | 4.79 | 0.58 | 10.2 | 89.6 | 0.2 | -5.04 | 0.74 | 0.73 | — | 4.3 | 0.004 | 0.78 | 0.0 | 0.04 | 11.92 | 0.00 | 2.056 | 17.02 | 0.00 | 12.8 | 87.1 | 0.1 | -1.74 | 0.87 | 0.75 | 0.77 | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✘ | 6KAD | 9956 | 2024-04-16 | 2019-06-21 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105342 | 9734 | 94 | 0 | 560 | 0 | 0 | logfile |
✔ | 7SYM | 25533 | 2024-04-11 | 2021-11-25 | 4.8 | 3.64 | 4.44 | 3.5 | 0.003 | 0.83 | 1.0 | 0.04 | 22.25 | 0.01 | 2.245 | 5.29 | 0.00 | 5.3 | 94.7 | 0.0 | -2.78 | 0.63 | 0.68 | — | 3.5 | 0.004 | 0.66 | 0.0 | 0.04 | 22.17 | 0.00 | 2.036 | 15.02 | 0.05 | 8.1 | 91.9 | 0.0 | -1.47 | 1.07 | 0.64 | 0.70 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✔ | 7FDB | 31539 | 2024-04-07 | 2021-07-16 | 4.8 | 5.04 | 4.73 | 8.8 | 0.003 | 0.57 | 0.0 | 0.04 | 13.84 | 0.00 | 1.761 | 12.61 | 0.00 | 7.3 | 92.6 | 0.0 | -0.78 | 0.66 | 0.32 | — | 4.7 | 0.004 | 0.86 | 0.0 | 0.05 | 13.92 | 0.01 | 2.005 | 28.55 | 0.00 | 6.4 | 93.6 | 0.0 | -1.56 | 2.61 | 0.77 | 0.66 | — | 64497 | 8295 | 31 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2024-04-06 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 8ED8 | 28032 | 2024-04-14 | 2022-09-03 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32229 | 3872 | 12 | 0 | 81 | 0 | 0 | logfile |
✘ | 8DDU | 27342 | 2024-04-14 | 2022-06-19 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✔ | 5MS1 | 3562 | 2024-04-05 | 2016-12-29 | 4.25 | 4.22 | — | 4.2 | 0.014 | 1.51 | 0.0 | 0.07 | 9.30 | 0.01 | 2.413 | 2.10 | 0.00 | 5.5 | 93.5 | 1.1 | -0.81 | 0.37 | 0.76 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 12.18 | 0.00 | 2.120 | 10.13 | 0.00 | 3.3 | 96.7 | 0.0 | -0.43 | 1.50 | 0.45 | 0.85 | — | 4350 | 556 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VL6 | 21231 | 2024-04-11 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |