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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HiX | 0231 | 2024-04-12 | 2018-08-31 | 3.39 | 3.49 | 3.39 | 3.4 | 0.008 | 1.31 | 12.0 | 0.05 | 15.97 | 0.01 | 1.582 | 14.35 | 4.18 | 4.5 | 95.2 | 0.3 | -3.09 | 0.84 | 0.82 | 2.30 | 3.4 | 0.005 | 0.77 | 5.0 | 0.04 | 18.02 | 0.01 | 1.874 | 14.78 | 4.34 | 5.9 | 94.1 | 0.1 | -0.31 | 0.75 | 0.87 | 0.87 | 2.16 | 133849 | 14850 | 98 | 591 | 477 | 0 | 0 | logfile |
✔ | 6J3Z | 9776 | 2024-04-11 | 2019-01-07 | 3.6 | 3.78 | — | 3.6 | 0.019 | 1.82 | 4.0 | 0.15 | 20.67 | 0.01 | 1.392 | 13.61 | 0.28 | 4.3 | 95.7 | 0.0 | -5.08 | 0.80 | 0.81 | 3.43 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 17.23 | 0.00 | 1.473 | 14.34 | 2.68 | 3.4 | 96.6 | 0.0 | -0.16 | 0.74 | 0.81 | 0.82 | 2.62 | 74619 | 6984 | 97 | 0 | 978 | 0 | 0 | logfile |
✔ | 8QFD | 18382 | 2024-04-09 | 2023-09-04 | 2.2 | 2.62 | 2.28 | 2.5 | 0.004 | 0.60 | 0.0 | 0.04 | 22.98 | 0.00 | 1.804 | 2.04 | 0.95 | 1.6 | 98.4 | 0.0 | 0.87 | 0.77 | 0.90 | 5.55 | 2.5 | 0.005 | 0.64 | 0.0 | 0.04 | 22.63 | 0.01 | 1.877 | 2.44 | 1.12 | 1.3 | 98.7 | 0.0 | 0.99 | 0.12 | 0.77 | 0.90 | 5.51 | 125372 | 6253 | 97 | 3393 | 166 | 2164 | 0 | logfile |
✘ | 6NWA | 0524 | 2024-04-12 | 2019-02-06 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137509 | 12666 | 96 | 0 | 771 | 0 | 0 | logfile |
✘ | 7FiX | 31605 | 2024-04-11 | 2021-08-01 | 1.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73929 | 7137 | 96 | 0 | 444 | 348 | 0 | logfile |
✘ | 8iWH | 35766 | 2024-04-12 | 2023-03-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75511 | 7531 | 95 | 0 | 407 | 0 | 0 | logfile |
✔ | 8UU8 | 42571 | 2024-04-15 | 2023-10-31 | 3.1 | 3.43 | — | 3.3 | 0.005 | 0.62 | 0.0 | 0.04 | 22.81 | 0.01 | 1.798 | 6.82 | 0.00 | 8.0 | 91.8 | 0.2 | -1.80 | 0.78 | 0.83 | 3.12 | 3.3 | 0.002 | 0.58 | 0.0 | 0.03 | 22.75 | 0.00 | 1.804 | 7.07 | 2.91 | 5.9 | 94.0 | 0.1 | -1.18 | 0.91 | 0.81 | 0.87 | 2.57 | 142031 | 5929 | 95 | 4614 | 428 | 364 | 0 | logfile |
✔ | 8J5K | 35987 | 2024-04-10 | 2023-04-23 | 2.93 | 3.61 | 3.02 | 3.4 | 0.012 | 1.99 | 0.0 | 0.15 | 20.97 | 0.01 | 2.201 | 13.03 | 2.91 | 7.7 | 91.5 | 0.8 | -0.72 | 0.79 | 0.83 | 2.71 | 3.4 | 0.003 | 0.87 | 0.0 | 0.06 | 17.62 | 0.00 | 1.969 | 8.37 | 1.62 | 5.0 | 94.9 | 0.1 | 0.40 | 0.50 | 0.78 | 0.85 | 2.90 | 71446 | 7302 | 94 | 0 | 716 | 0 | 0 | logfile |
✘ | 6KAD | 9956 | 2024-04-16 | 2019-06-21 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105342 | 9734 | 94 | 0 | 560 | 0 | 0 | logfile |
✘ | 7Uii | 26546 | 2024-04-11 | 2022-03-29 | 2.6 | 2.91 | 2.65 | 2.9 | 0.003 | 0.61 | 0.0 | 0.05 | 13.58 | 0.00 | 2.234 | 5.76 | 0.00 | 5.1 | 94.9 | 0.0 | -0.77 | 0.60 | 0.87 | 4.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 130944 | 16926 | 93 | 0 | 186 | 186 | 0 | logfile |
✔ | 7JJJ | 22354 | 2024-04-06 | 2020-07-26 | 4.5 | 4.63 | 4.47 | 4.5 | 0.020 | 1.79 | 0.0 | 0.13 | 10.01 | 0.01 | 2.377 | 0.90 | 0.07 | 2.0 | 98.0 | 0.0 | 0.68 | 0.79 | 0.80 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.05 | 11.60 | 0.00 | 2.175 | 10.75 | 0.00 | 4.4 | 95.6 | 0.0 | -0.16 | 1.43 | 0.79 | 0.83 | — | 54614 | 6674 | 92 | 0 | 182 | 0 | 0 | logfile |
✔ | 6ET5 | 3951 | 2024-04-14 | 2017-10-25 | 2.87 | 4.09 | 3.11 | 3.5 | 0.025 | 2.86 | 202.0 | 0.21 | 21.89 | 0.03 | 1.592 | 33.46 | 8.13 | 12.2 | 83.7 | 4.1 | -5.05 | 0.80 | 0.85 | 3.34 | 3.5 | 0.004 | 0.99 | 0.0 | 0.05 | 18.88 | 0.01 | 2.049 | 14.58 | 1.50 | 8.6 | 91.1 | 0.3 | -0.18 | 1.31 | 0.79 | 0.85 | 3.05 | 31994 | 3492 | 92 | 0 | 75 | 0 | 0 | logfile |
✘ | 7WG5 | 32477 | 2024-04-06 | 2021-12-28 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112687 | 11759 | 92 | 0 | 545 | 0 | 0 | logfile |
✘ | 7DCo | 30637 | 2024-04-10 | 2020-10-26 | 2.5 | 2.59 | — | 2.6 | 0.010 | 1.11 | 8.0 | 0.08 | 15.02 | 0.01 | 2.079 | 5.90 | 1.87 | 4.4 | 95.1 | 0.5 | -3.91 | 0.53 | 0.65 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 129875 | 15294 | 91 | 556 | 24 | 1714 | 0 | logfile |
✘ | 8BQW | 16189 | 2024-04-09 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 5XNM | 6742 | 2024-04-14 | 2017-05-23 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92842 | 8712 | 90 | 0 | 486 | 0 | 0 | logfile |
✘ | 7oFQ | 12875 | 2024-04-12 | 2021-05-05 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80691 | 9493 | 90 | 0 | 849 | 0 | 0 | logfile |
✔ | 8UU9 | 42576 | 2024-04-15 | 2023-10-31 | 3.1 | 3.37 | 3.07 | 3.3 | 0.005 | 0.62 | 0.0 | 0.04 | 22.65 | 0.01 | 1.847 | 5.82 | 0.20 | 6.8 | 93.0 | 0.2 | -1.81 | 0.79 | 0.82 | 2.89 | 3.2 | 0.002 | 0.57 | 0.0 | 0.03 | 22.56 | 0.00 | 1.195 | 6.86 | 3.18 | 4.6 | 95.3 | 0.1 | -0.83 | 1.02 | 0.83 | 0.89 | 2.70 | 142177 | 5710 | 90 | 4610 | 480 | 396 | 0 | logfile |
✔ | 7JU4 | 22481 | 2024-04-11 | 2020-08-19 | 3.4 | 3.50 | — | 3.7 | 0.004 | 0.70 | 3.0 | 0.05 | 15.00 | 0.00 | 1.923 | 14.97 | 0.04 | 5.8 | 94.2 | 0.0 | -0.77 | 0.58 | 0.71 | 1.64 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 16.58 | 0.00 | 1.921 | 12.48 | 2.11 | 4.2 | 95.8 | 0.0 | 0.16 | 0.39 | 0.60 | 0.78 | 1.25 | 133504 | 16960 | 90 | 14 | 101 | 0 | 0 | logfile |
✔ | 6J3Y | 9775 | 2024-04-10 | 2019-01-07 | 3.3 | 3.49 | — | 3.4 | 0.019 | 1.77 | 4.0 | 0.14 | 19.44 | 0.01 | 1.372 | 10.02 | 0.32 | 4.1 | 95.9 | 0.0 | -5.09 | 0.77 | 0.84 | 3.85 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.53 | 0.00 | 1.863 | 12.08 | 1.60 | 3.2 | 96.8 | 0.0 | 0.20 | 0.65 | 0.79 | 0.87 | 2.93 | 70136 | 6984 | 90 | 0 | 428 | 0 | 0 | logfile |