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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8Wi7 | 37559 | 2024-04-16 | 2023-09-24 | 3.5 | 3.80 | 3.03 | 3.5 | 0.002 | 0.54 | 0.0 | 0.03 | 24.05 | 0.00 | 1.231 | 10.82 | 0.45 | 3.3 | 96.6 | 0.0 | 0.46 | 0.88 | 0.85 | 1.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144808 | 5738 | 51 | 4658 | 0 | 0 | 0 | logfile |
✘ | 8P76 | 17519 | 2024-04-05 | 2023-05-30 | 2.0 | 1.89 | 2.02 | 2.0 | 0.006 | 0.63 | 0.0 | 0.04 | 17.10 | 0.00 | 2.258 | 6.57 | 0.90 | 1.3 | 98.5 | 0.2 | 1.97 | 0.66 | 0.79 | 5.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5261 | 630 | 7 | 0 | 2 | 151 | 0 | logfile |
✘ | 8TGK | 41239 | 2024-04-05 | 2023-07-12 | 3.7 | 2.41 | 3.64 | 2.2 | 0.005 | 0.97 | 1.0 | 0.05 | 17.06 | 0.01 | 2.204 | 20.27 | 0.81 | 1.7 | 97.6 | 0.7 | 0.74 | 0.76 | 0.78 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5772 | 766 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 8V6V | 43002 | 2024-04-16 | 2023-12-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37004 | 1673 | 14 | 294 | 4 | 0 | 17362 | logfile |
✘ | 8RQ4 | 19433 | 2024-04-07 | 2024-01-17 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11210 | 1402 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 8TGN | 41242 | 2024-04-05 | 2023-07-12 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5745 | 761 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 8iFC | 35412 | 2024-04-15 | 2023-02-17 | 2.9 | 2.92 | 2.87 | 2.9 | 0.008 | 0.64 | 0.0 | 0.04 | 23.41 | 0.02 | 1.672 | 13.72 | 3.37 | 4.4 | 95.6 | 0.0 | 0.30 | 0.54 | 0.79 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142560 | 5585 | 72 | 4554 | 490 | 0 | 0 | logfile |
✘ | 8T6L | 41071 | 2024-04-07 | 2023-06-16 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10988 | 1237 | 6 | 0 | 41 | 1 | 0 | logfile |
✘ | 8FQD | 29384 | 2024-04-06 | 2023-01-06 | 3.01 | 2.62 | 3.02 | 3.0 | 0.015 | 0.73 | 0.0 | 0.06 | 17.60 | 0.00 | 2.264 | 6.54 | 0.11 | 3.3 | 96.7 | 0.0 | -0.68 | 0.64 | 0.83 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8384 | 1064 | 14 | 0 | 4 | 2 | 0 | logfile |
✘ | 8GCE | 29932 | 2024-04-08 | 2023-03-01 | 3.12 | 3.35 | 3.13 | 3.5 | 0.007 | 1.15 | 15.0 | 0.08 | 16.74 | 0.02 | 1.584 | 31.98 | 3.38 | 9.6 | 88.8 | 1.6 | -2.30 | 0.63 | 0.57 | 1.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12343 | 1588 | 7 | 0 | 17 | 0 | 0 | logfile |
✘ | 8UNY | 42421 | 2024-04-06 | 2023-10-19 | 3.6 | 4.06 | 3.81 | 4.0 | 0.006 | 0.97 | 0.0 | 0.06 | 14.64 | 0.01 | 2.255 | 7.64 | 0.00 | 1.7 | 98.3 | 0.0 | 1.32 | 0.63 | 0.80 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6546 | 912 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8GGT | 40020 | 2024-04-05 | 2023-03-08 | 3.5 | 3.61 | 3.44 | 3.7 | 0.004 | 0.70 | 0.0 | 0.04 | 13.41 | 0.00 | 2.240 | 4.15 | 0.00 | 2.5 | 97.5 | 0.0 | 1.88 | 0.49 | 0.81 | 2.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2105 | 281 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8Uo4 | 42427 | 2024-04-05 | 2023-10-19 | 4.0 | 4.28 | 3.99 | 4.2 | 0.004 | 0.72 | 0.0 | 0.04 | 12.00 | 0.00 | 2.322 | 5.46 | 0.00 | 3.2 | 96.8 | 0.0 | -0.04 | 0.69 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5702 | 910 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 7ZZ3 | 15033 | 2024-04-15 | 2022-05-25 | 2.41 | 2.71 | 2.40 | 2.4 | 0.006 | 0.86 | 0.0 | 0.05 | 17.24 | 0.00 | 2.065 | 4.87 | 1.75 | 2.5 | 97.5 | 0.0 | -1.03 | 0.93 | 0.90 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34427 | 4311 | 12 | 0 | 26 | 166 | 0 | logfile |
✘ | 8UNM | 42409 | 2024-04-05 | 2023-10-19 | 3.4 | 3.77 | 3.54 | 3.7 | 0.005 | 0.64 | 0.0 | 0.04 | 13.95 | 0.00 | 2.208 | 3.37 | 0.00 | 2.5 | 97.5 | 0.0 | 1.00 | 0.64 | 0.86 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6415 | 889 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8TET | 41201 | 2024-04-13 | 2023-07-07 | 4.26 | 3.36 | 3.96 | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 13.46 | 0.01 | 2.029 | 7.57 | 0.01 | 5.1 | 94.8 | 0.1 | -0.86 | 0.36 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 87998 | 11050 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8T6R | 41078 | 2024-04-16 | 2023-06-17 | 1.78 | 1.90 | 1.85 | 1.9 | 0.006 | 0.89 | 0.0 | 0.06 | 15.76 | 0.01 | 2.121 | 4.24 | 1.88 | 2.0 | 98.0 | 0.0 | 0.87 | 0.74 | 0.80 | 7.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142800 | 18120 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RAK | 4778 | 2024-04-07 | 2019-04-06 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10180 | 1280 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2024-04-11 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 7BST | 30166 | 2024-04-17 | 2020-03-31 | 4.37 | 4.53 | — | 4.3 | 0.004 | 1.03 | 1.0 | 0.06 | 11.11 | 0.01 | 2.232 | 7.20 | 0.56 | 10.3 | 89.7 | 0.0 | -4.41 | 0.86 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28266 | 3508 | 7 | 0 | 0 | 0 | 0 | logfile |