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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5UK2 | 8564 | 2024-04-15 | 2017-01-19 | 4.8 | 4.64 | — | 4.6 | 0.012 | 1.36 | 0.0 | 0.07 | 12.49 | 0.01 | 2.083 | 3.96 | 0.16 | 8.7 | 91.1 | 0.1 | -4.11 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 8WGV | 37516 | 2024-04-16 | 2023-09-22 | 2.92 | 3.19 | 3.11 | 3.1 | 0.004 | 0.64 | 0.0 | 0.05 | 19.46 | 0.00 | 2.164 | 13.41 | 0.14 | 8.3 | 91.6 | 0.1 | -1.46 | 0.65 | 0.67 | 2.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38688 | 4764 | 15 | 0 | 57 | 0 | 0 | logfile |
✘ | 6PEE | 20315 | 2024-04-16 | 2019-06-20 | 3.42 | 3.27 | — | 3.5 | 0.007 | 0.87 | 0.0 | 0.05 | 13.95 | 0.01 | 2.186 | 3.14 | 0.34 | 5.8 | 94.2 | 0.0 | -3.95 | 0.84 | 0.86 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40440 | 5175 | 30 | 0 | 45 | 0 | 0 | logfile |
✘ | 7ZZ6 | 15036 | 2024-04-06 | 2022-05-25 | 2.15 | 2.39 | 2.12 | 2.1 | 0.006 | 0.68 | 0.0 | 0.04 | 17.30 | 0.00 | 1.385 | 8.71 | 3.48 | 2.9 | 97.1 | 0.0 | 0.64 | 0.91 | 0.90 | 4.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8257 | 1017 | 6 | 0 | 6 | 157 | 0 | logfile |
✘ | 8GGT | 40020 | 2024-04-05 | 2023-03-08 | 3.5 | 3.61 | 3.44 | 3.7 | 0.004 | 0.70 | 0.0 | 0.04 | 13.41 | 0.00 | 2.240 | 4.15 | 0.00 | 2.5 | 97.5 | 0.0 | 1.88 | 0.49 | 0.81 | 2.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2105 | 281 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8UNY | 42421 | 2024-04-06 | 2023-10-19 | 3.6 | 4.06 | 3.81 | 4.0 | 0.006 | 0.97 | 0.0 | 0.06 | 14.64 | 0.01 | 2.255 | 7.64 | 0.00 | 1.7 | 98.3 | 0.0 | 1.32 | 0.63 | 0.80 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6546 | 912 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8SoA | 40651 | 2024-04-11 | 2023-04-28 | 3.32 | 3.60 | 3.37 | 3.5 | 0.004 | 0.63 | 0.0 | 0.04 | 13.20 | 0.01 | 2.028 | 3.87 | 4.83 | 6.4 | 93.4 | 0.3 | -1.21 | 0.77 | 0.73 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24039 | 1481 | 3 | 0 | 1 | 0 | 12066 | logfile |
✘ | 8UBX | 42108 | 2024-04-06 | 2023-09-25 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6757 | 419 | 2 | 0 | 4 | 68 | 3328 | logfile |
✘ | 6KUP | 9579 | 2024-04-08 | 2019-09-02 | 4.3 | 4.37 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.05 | 11.44 | 0.01 | 2.227 | 6.50 | 0.16 | 7.1 | 92.6 | 0.2 | -4.90 | 0.71 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12254 | 1461 | 5 | 23 | 0 | 0 | 0 | logfile |
✘ | 7M9C | 23723 | 2024-04-14 | 2021-03-30 | 4.2 | 4.61 | 3.85 | 4.2 | 0.003 | 0.64 | 4.0 | 0.04 | 15.01 | 0.00 | 1.350 | 9.42 | 0.10 | 2.6 | 97.3 | 0.1 | 0.09 | 0.78 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30517 | 3598 | 26 | 66 | 10 | 0 | 0 | logfile |
✘ | 6GEN | 4396 | 2024-04-17 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 20.64 | 0.01 | 2.109 | 5.89 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.58 | -0.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |
✘ | 7X76 | 33033 | 2024-04-07 | 2022-03-09 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64334 | 3793 | 18 | 168 | 15 | 0 | 31436 | logfile |
✘ | 8A5E | 15166 | 2024-04-08 | 2022-06-14 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13611 | 1769 | 8 | 0 | 19 | 0 | 0 | logfile |
✘ | 8QUC | 18659 | 2024-04-08 | 2023-10-16 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12829 | 1580 | 12 | 0 | 21 | 40 | 0 | logfile |
✘ | 8V6V | 43002 | 2024-04-16 | 2023-12-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37004 | 1673 | 14 | 294 | 4 | 0 | 17362 | logfile |
✘ | 8Uo4 | 42427 | 2024-04-05 | 2023-10-19 | 4.0 | 4.28 | 3.99 | 4.2 | 0.004 | 0.72 | 0.0 | 0.04 | 12.00 | 0.00 | 2.322 | 5.46 | 0.00 | 3.2 | 96.8 | 0.0 | -0.04 | 0.69 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5702 | 910 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8TGK | 41239 | 2024-04-05 | 2023-07-12 | 3.7 | 2.41 | 3.64 | 2.2 | 0.005 | 0.97 | 1.0 | 0.05 | 17.06 | 0.01 | 2.204 | 20.27 | 0.81 | 1.7 | 97.6 | 0.7 | 0.74 | 0.76 | 0.78 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5772 | 766 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7XJi | 33228 | 2024-04-06 | 2022-04-18 | 3.9 | 3.60 | 3.70 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 13.92 | 0.00 | 2.165 | 9.02 | 0.00 | 4.3 | 95.7 | 0.0 | -0.25 | 0.61 | 0.78 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1027 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7AP9 | 11851 | 2024-04-14 | 2020-10-16 | 3.01 | 3.70 | — | 3.2 | 0.008 | 0.68 | 0.0 | 0.05 | 12.02 | 0.00 | 2.023 | 4.33 | 2.91 | 6.9 | 93.1 | 0.0 | -0.45 | 0.90 | 0.88 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30881 | 3782 | 14 | 11 | 5 | 0 | 0 | logfile |
✘ | 6DG7 | 7882 | 2024-04-09 | 2018-05-17 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16720 | 1955 | 29 | 0 | 40 | 5 | 0 | logfile |