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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6ZZX | 11588 | 2024-03-11 | 2020-08-05 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56369 | 4684 | 68 | 0 | 403 | 99 | 0 | logfile |
✘ | 8APB | 15564 | 2024-03-16 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 61 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8DBX | 27316 | 2024-03-17 | 2022-06-14 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16968 | 1998 | 12 | 0 | 10 | 914 | 0 | logfile |
✘ | 7KRR | 23011 | 2024-03-20 | 2020-11-20 | 3.5 | 3.55 | — | 3.4 | 0.016 | 1.97 | 18.0 | 0.15 | 14.46 | 0.01 | 1.621 | 7.32 | 2.53 | 7.1 | 92.1 | 0.8 | -2.17 | 0.81 | 0.80 | 3.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27192 | 3310 | 35 | 0 | 95 | 0 | 0 | logfile |
✔ | 7N1X | 24126 | 2024-03-20 | 2021-05-28 | 4.0 | 2.34 | — | 1.8 | 0.014 | 1.89 | 13.0 | 0.14 | 15.45 | 0.01 | 1.484 | 9.90 | 1.97 | 8.1 | 91.3 | 0.6 | -2.39 | 0.80 | 0.69 | — | 1.8 | 0.005 | 0.88 | 1.0 | 0.05 | 15.85 | 0.00 | 1.529 | 17.24 | 4.14 | 5.3 | 94.7 | 0.0 | -1.12 | 1.08 | 0.80 | 0.69 | — | 26810 | 3257 | 35 | 0 | 95 | 0 | 0 | logfile |
✔ | 7Q59 | 13829 | 2024-03-25 | 2021-11-03 | 4.36 | 4.89 | — | 4.4 | 0.003 | 0.63 | 0.0 | 0.04 | 10.22 | 0.00 | 1.925 | 6.09 | 0.72 | 3.6 | 96.4 | 0.0 | -0.17 | 0.79 | 0.65 | — | 4.4 | 0.004 | 0.69 | 0.0 | 0.04 | 11.74 | 0.00 | 1.967 | 16.26 | 0.00 | 4.5 | 95.5 | 0.0 | -0.14 | 1.43 | 0.90 | 0.84 | — | 47632 | 6118 | 14 | 0 | 6 | 0 | 0 | logfile |
✘ | 8APA | 15563 | 2024-03-16 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✔ | 6FTi | 4316 | 2024-03-02 | 2018-02-22 | 4.2 | 4.31 | — | 4.2 | 0.011 | 1.38 | 18.0 | 0.10 | 25.55 | 0.01 | 0.284 | 12.03 | 11.77 | 9.7 | 87.9 | 2.4 | -4.07 | 0.61 | 0.61 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 24.07 | 0.01 | 1.148 | 24.17 | 0.06 | 8.2 | 91.2 | 0.5 | -1.60 | 1.00 | 0.63 | 0.66 | — | 153850 | 8349 | 76 | 4014 | 399 | 0 | 0 | logfile |
✔ | 7Y7K | 33668 | 2024-03-10 | 2022-06-22 | 4.4 | 4.96 | 5.46 | 4.3 | 0.010 | 1.63 | 0.0 | 0.07 | 13.11 | 0.01 | 2.215 | 33.93 | 3.90 | 10.3 | 86.1 | 3.6 | -2.50 | 0.71 | 0.63 | — | 4.4 | 0.003 | 0.76 | 0.0 | 0.04 | 11.35 | 0.00 | 2.166 | 15.16 | 0.35 | 7.5 | 92.3 | 0.2 | -1.11 | 1.42 | 0.73 | 0.68 | — | 2942 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RDP | 4826 | 2024-03-22 | 2019-04-12 | 2.8 | 2.95 | 2.97 | 3.0 | 0.011 | 1.07 | 0.0 | 0.06 | 14.80 | 0.01 | 2.023 | 6.71 | 0.65 | 5.4 | 94.3 | 0.3 | -3.78 | 0.67 | 0.83 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33891 | 4502 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 8HAK | 34594 | 2024-03-17 | 2022-10-26 | 4.5 | 4.61 | 4.45 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 24.74 | 0.00 | 2.214 | 12.85 | 0.00 | 2.2 | 97.8 | 0.0 | 0.55 | 0.87 | 0.75 | — | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 26.08 | 0.00 | 2.182 | 16.37 | 0.00 | 2.9 | 97.1 | 0.0 | 0.98 | 0.84 | 0.89 | 0.81 | — | 16342 | 1285 | 11 | 292 | 0 | 0 | 0 | logfile |
✘ | 8GK4 | 40179 | 2024-03-19 | 2023-03-17 | 3.12 | 3.67 | 3.28 | 3.6 | 0.007 | 1.28 | 0.0 | 0.09 | 11.44 | 0.01 | 2.324 | 8.40 | 2.37 | 2.4 | 97.5 | 0.0 | 0.46 | 0.70 | 0.73 | 1.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23911 | 3094 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6RFS | 4874 | 2024-03-12 | 2019-04-16 | 4.04 | 4.52 | — | 4.1 | 0.010 | 1.26 | 0.0 | 0.94 | 10.33 | 0.01 | 2.078 | 8.88 | 0.15 | 8.3 | 91.5 | 0.2 | -4.08 | 0.83 | 0.83 | — | 4.1 | 0.008 | 1.57 | 0.0 | 0.29 | 11.90 | 0.00 | 2.039 | 17.07 | 0.02 | 5.8 | 94.1 | 0.0 | -0.56 | 1.37 | 0.83 | 0.84 | — | 60966 | 7685 | 49 | 0 | 12 | 0 | 0 | logfile |
✘ | 8APC | 15565 | 2024-03-16 | 2022-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 59 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8CRS | 26957 | 2024-03-17 | 2022-05-11 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17888 | 1998 | 12 | 0 | 12 | 1692 | 0 | logfile |
✘ | 8APH | 15571 | 2024-03-16 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✔ | 7JLX | 22383 | 2024-03-10 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RDQ | 4827 | 2024-03-10 | 2019-04-12 | 4.0 | 3.99 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.05 | 15.03 | 0.01 | 1.908 | 6.99 | 0.44 | 5.2 | 94.6 | 0.2 | -4.22 | 0.72 | 0.79 | — | 3.9 | 0.004 | 0.76 | 2.0 | 0.04 | 16.74 | 0.00 | 1.730 | 14.37 | 3.09 | 4.6 | 95.3 | 0.1 | -0.51 | 0.60 | 0.72 | 0.81 | — | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 8i0Q | 35106 | 2024-03-11 | 2023-01-11 | 4.45 | 4.83 | 5.07 | 4.4 | 0.003 | 0.59 | 0.0 | 0.04 | 12.56 | 0.00 | 2.167 | 9.44 | 0.00 | 5.1 | 94.9 | 0.0 | -1.41 | 0.82 | 0.81 | — | 4.4 | 0.003 | 0.63 | 0.0 | 0.04 | 13.26 | 0.00 | 2.191 | 13.46 | 0.00 | 7.1 | 92.9 | 0.0 | -1.19 | 0.43 | 0.83 | 0.83 | — | 8842 | 1192 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 8K7B | 36937 | 2024-03-14 | 2023-07-26 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9496 | 1180 | 4 | 0 | 6 | 0 | 0 | logfile |