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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6HiQ | 0227 | 2024-04-09 | 2018-08-30 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16110 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 7KSQ | 23023 | 2024-04-15 | 2020-11-23 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36553 | 3347 | 42 | 0 | 219 | 45 | 0 | logfile |
✘ | 5T4D | 8354 | 2024-04-09 | 2016-08-29 | 3.0 | 3.12 | 2.96 | 3.1 | 0.010 | 0.81 | 0.0 | 0.05 | 9.48 | 0.00 | 2.120 | 12.34 | 0.26 | 4.4 | 95.6 | 0.0 | -2.69 | 0.75 | 0.79 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14876 | 1852 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6KLS | 0716 | 2024-04-08 | 2019-07-30 | 3.3 | 3.40 | 3.21 | 3.4 | 0.014 | 1.22 | 2.0 | 0.05 | 18.65 | 0.03 | 1.992 | 14.52 | 0.69 | 10.7 | 89.2 | 0.1 | -3.67 | 0.66 | 0.77 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13011 | 1530 | 12 | 0 | 17 | 0 | 0 | logfile |
✘ | 7LY2 | 23582 | 2024-04-15 | 2021-03-05 | 2.5 | 2.61 | 2.57 | 2.6 | 0.011 | 1.24 | 3.0 | 0.08 | 11.26 | 0.01 | 2.427 | 0.64 | 0.19 | 1.6 | 98.4 | 0.0 | 0.74 | 0.72 | 0.76 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33444 | 4470 | 27 | 0 | 69 | 0 | 0 | logfile |
✘ | 7E0i | 30933 | 2024-04-06 | 2021-01-28 | 3.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8033 | 677 | 6 | 0 | 58 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2024-04-07 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7R5M | 14331 | 2024-04-07 | 2022-02-11 | 3.3 | 3.09 | 3.20 | 3.2 | 0.006 | 0.94 | 0.0 | 0.06 | 14.64 | 0.00 | 2.411 | 1.26 | 0.80 | 4.6 | 95.4 | 0.0 | -0.79 | 0.70 | 0.80 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11295 | 1491 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7X28 | 32961 | 2024-04-16 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.013 | 1.52 | 5.0 | 0.11 | 13.24 | 0.00 | 1.606 | 7.72 | 7.98 | 2.7 | 97.0 | 0.2 | 2.21 | 0.57 | 0.40 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31583 | 4119 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Y5A | 10692 | 2024-04-14 | 2020-02-25 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32403 | 1940 | 10 | 0 | 5 | 0 | 16272 | logfile |
✘ | 6DG7 | 7882 | 2024-04-09 | 2018-05-17 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16720 | 1955 | 29 | 0 | 40 | 5 | 0 | logfile |
✘ | 6GYS | 0096 | 2024-04-16 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.42 | 0.01 | 0.873 | 14.94 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |
✘ | 7YPA | 33997 | 2024-04-12 | 2022-08-03 | 3.05 | 3.16 | 3.05 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 15.66 | 0.01 | 2.191 | 3.02 | 0.08 | 3.1 | 96.9 | 0.0 | -3.59 | 0.76 | 0.81 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26022 | 3129 | 10 | 86 | 3 | 0 | 0 | logfile |
✘ | 7ZZ3 | 15033 | 2024-04-15 | 2022-05-25 | 2.41 | 2.71 | 2.40 | 2.4 | 0.006 | 0.86 | 0.0 | 0.05 | 17.24 | 0.00 | 2.065 | 4.87 | 1.75 | 2.5 | 97.5 | 0.0 | -1.03 | 0.93 | 0.90 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34427 | 4311 | 12 | 0 | 26 | 166 | 0 | logfile |
✘ | 6RAJ | 4777 | 2024-04-07 | 2019-04-06 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10198 | 1282 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2024-04-11 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 7NF7 | 12297 | 2024-04-07 | 2021-02-05 | 2.68 | 2.40 | 2.58 | 2.6 | 0.006 | 0.71 | 0.0 | 0.05 | 17.23 | 0.00 | 2.336 | 5.26 | 6.53 | 4.7 | 95.1 | 0.2 | -3.11 | 0.69 | 0.83 | 4.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9642 | 1150 | 8 | 0 | 18 | 0 | 0 | logfile |
✘ | 7VYH | 32205 | 2024-04-13 | 2021-11-14 | 2.9 | 3.02 | — | 3.1 | 0.007 | 0.74 | 0.0 | 0.05 | 14.62 | 0.01 | 2.198 | 8.58 | 0.00 | 3.6 | 96.3 | 0.1 | 0.11 | 0.75 | 0.86 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27933 | 3488 | 27 | 0 | 16 | 0 | 0 | logfile |
✘ | 7NWL | 12634 | 2024-04-08 | 2021-03-17 | 3.1 | 3.95 | 3.38 | 3.5 | 0.013 | 1.48 | 0.0 | 0.11 | 14.02 | 0.02 | 1.790 | 40.24 | 0.93 | 1.9 | 98.0 | 0.1 | 0.97 | 0.80 | 0.66 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13904 | 1747 | 17 | 0 | 40 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2024-04-09 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |