Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JGD	22323	2023-11-17	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.45	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.53	0.0	0.05	14.82	0.00	2.054	14.21	0.08	7.3	92.7	0.0	0.43	0.52	0.63	0.71	1.77	20292	1435	1	0	0	0	8505	logfile
✔	7Y5G	33619	2023-11-13	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.53	0.0	0.04	15.35	0.00	2.030	5.10	0.38	1.0	99.0	0.0	1.53	0.65	0.65	0.75	0.28	4736	604	4	0	6	0	0	logfile
✔	8JET	36195	2023-11-17	2023-05-16	3.1	2.32	3.02	3.2	0.002	0.43	0.0	0.04	9.65	0.00	2.269	3.61	1.54	5.4	94.6	0.0	-0.08	0.69	0.80	1.95	3.2	0.002	0.58	0.0	0.04	12.65	0.00	2.189	7.82	0.22	6.3	93.7	0.0	1.47	1.55	0.70	0.81	1.54	19526	2612	4	0	0	0	0	logfile
✔	6XGC	22180	2023-11-16	2020-06-17	4.1	4.25	—	4.2	0.002	0.43	0.0	0.04	7.79	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.66	0.0	0.04	11.21	0.00	2.197	11.45	0.05	3.6	96.4	0.0	0.02	1.31	0.82	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	7Q8S	13865	2023-11-17	2021-11-11	3.4	3.39	3.35	3.3	0.002	0.44	0.0	0.04	8.15	0.00	2.222	3.32	0.23	2.1	97.9	0.0	1.31	0.68	0.86	4.17	3.3	0.003	0.56	0.0	0.05	12.98	0.00	2.140	4.19	0.00	3.2	96.8	0.0	0.86	0.55	0.70	0.89	3.69	19665	2485	15	0	10	0	0	logfile
✔	7QV5	14167	2023-11-13	2022-01-19	3.0	3.03	1.88	3.0	0.085	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.34	0.0	0.06	12.28	0.00	2.555	5.22	0.35	0.7	99.3	0.0	-1.06	0.86	0.50	0.89	6.84	5562	342	27	0	18	0	2997	logfile
✔	8iP4	35631	2023-11-15	2023-03-14	2.7	3.34	2.82	3.1	0.002	0.44	0.0	0.04	12.81	0.00	2.319	4.04	0.00	1.6	98.4	0.0	3.99	0.73	0.82	2.85	3.1	0.003	0.54	0.0	0.04	15.58	0.00	2.266	7.93	0.91	1.7	98.3	0.0	3.54	1.11	0.73	0.82	3.23	12933	1600	12	0	3	5	0	logfile
✔	8EVU	28637	2023-11-15	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.09	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.006	0.58	0.0	0.04	13.31	0.00	1.114	4.50	0.88	2.5	97.5	0.0	1.40	0.42	0.76	0.91	3.89	11902	1540	9	0	5	0	0	logfile
✔	7YLU	33917	2023-11-15	2022-07-27	4.55	4.26	5.68	4.4	0.002	0.44	0.0	0.04	6.30	0.00	1.304	3.45	0.11	1.9	98.0	0.1	2.63	0.69	0.62	—	4.4	0.004	0.77	0.0	0.05	11.23	0.00	2.032	20.60	0.07	4.0	95.9	0.1	-0.01	1.19	0.74	0.71	—	65607	8578	17	0	0	0	0	logfile
✔	6ZLG	11265	2023-11-21	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.003	0.40	0.0	0.03	17.92	0.00	2.131	6.27	3.28	1.6	98.4	0.0	5.28	1.17	0.82	0.90	2.58	33008	4072	24	0	0	0	0	logfile
✔	8G01	29641	2023-11-17	2023-01-31	3.4	2.36	3.52	2.8	0.002	0.44	0.0	0.04	11.41	0.00	2.029	3.31	0.00	1.0	99.0	0.0	2.02	0.68	0.71	1.84	2.6	0.004	0.60	0.0	0.04	15.33	0.00	1.997	10.74	0.31	2.8	97.2	0.0	0.78	0.86	0.71	0.76	2.04	18152	1148	6	0	0	0	9214	logfile
✔	7o73	12744	2023-11-18	2021-04-12	3.4	3.36	3.51	3.3	0.002	0.44	2.0	0.04	14.41	0.00	1.888	4.22	0.01	2.2	97.8	0.0	1.66	0.79	0.78	1.84	3.3	0.007	0.76	0.0	0.05	16.75	0.00	1.898	12.59	0.53	3.7	96.3	0.0	0.11	1.31	0.80	0.82	1.76	73768	8880	43	130	22	0	0	logfile
✔	8A03	15046	2023-11-13	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	3.3	0.002	0.50	0.0	0.05	16.53	0.00	2.187	4.93	0.32	3.0	97.0	0.0	-0.16	0.40	0.50	0.86	2.60	5511	717	3	0	0	0	0	logfile
✔	7UY6	26865	2023-11-17	2022-05-06	2.9	2.49	2.94	3.0	0.002	0.44	0.0	0.04	15.88	0.00	2.215	4.00	0.06	1.7	98.3	0.0	1.19	0.70	0.81	3.09	2.9	0.003	0.52	0.0	0.04	17.85	0.00	2.202	5.20	1.57	2.5	97.5	0.1	1.26	0.44	0.70	0.84	2.85	18746	1847	9	170	1	0	0	logfile
✔	7WK7	32561	2023-11-15	2022-01-08	3.49	2.78	—	3.0	0.002	0.44	0.0	0.04	8.68	0.00	2.206	5.49	3.12	4.5	95.4	0.1	-3.90	0.77	0.76	2.02	3.1	0.004	0.78	0.0	0.05	14.91	0.00	2.207	15.16	0.98	6.4	93.5	0.1	-1.05	0.77	0.79	0.80	2.02	10206	1330	4	0	2	0	0	logfile
✘	8A01	15044	2023-11-13	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✔	7WLA	32579	2023-11-15	2022-01-12	3.76	3.09	3.72	3.2	0.002	0.44	0.0	0.04	8.82	0.00	2.197	6.98	4.01	5.1	94.9	0.0	-4.06	0.70	0.68	0.60	3.0	0.004	0.86	0.0	0.05	14.37	0.01	2.047	20.36	0.45	7.1	92.9	0.1	-1.20	1.39	0.72	0.71	0.74	10193	1327	2	0	0	0	0	logfile
✔	7EoR	31228	2023-11-18	2021-04-22	4.0	4.40	—	4.1	0.002	0.44	0.0	0.04	8.80	0.00	2.227	7.42	1.64	3.2	96.8	0.0	0.66	0.86	0.76	—	4.1	0.004	0.74	0.0	0.05	13.25	0.00	2.132	16.42	0.23	5.9	94.1	0.0	-0.94	2.23	0.89	0.82	—	24204	3030	8	0	16	0	0	logfile
✔	8D9L	27265	2023-11-13	2022-06-10	4.04	5.24	4.18	4.5	0.002	0.44	0.0	0.03	9.71	0.00	2.250	7.25	0.43	1.8	98.2	0.0	1.09	0.89	0.80	—	4.5	0.004	0.58	0.0	0.04	12.20	0.00	2.118	18.31	0.00	4.1	95.9	0.0	-0.01	0.69	0.90	0.84	—	5757	553	4	65	1	0	0	logfile
✔	7WK1	32555	2023-11-15	2022-01-08	3.25	3.54	—	3.6	0.002	0.44	0.0	0.04	8.42	0.00	2.212	6.55	2.94	5.2	94.7	0.1	-4.01	0.65	0.76	1.98	3.5	0.003	0.62	0.0	0.04	13.50	0.00	2.061	11.79	0.27	6.3	93.6	0.1	-0.02	0.81	0.71	0.84	1.39	10200	1330	4	0	2	0	0	logfile

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