Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PMY	13544	2023-11-15	2021-09-04	3.8	4.01	3.76	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.14	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.003	0.54	0.0	0.04	12.23	0.00	2.000	7.81	0.53	3.7	96.3	0.0	0.73	0.78	0.65	0.80	2.00	10499	659	2	0	0	0	5276	logfile
✔	7M42	23662	2023-11-14	2021-03-19	3.3	3.66	—	3.6	0.002	0.56	0.0	0.04	12.89	0.00	2.128	6.83	1.22	3.5	96.4	0.1	-2.65	0.63	0.65	3.52	3.6	0.003	0.62	0.0	0.04	14.81	0.00	2.071	7.59	0.22	5.1	94.8	0.1	-0.97	0.95	0.68	0.84	3.57	8115	1070	6	0	3	0	0	logfile
✔	7YRN	34063	2023-11-16	2022-08-10	2.99	3.42	3.10	3.2	0.002	0.48	0.0	0.04	10.28	0.00	2.284	9.91	4.02	5.8	93.7	0.5	-0.60	0.74	0.66	2.01	3.2	0.003	0.66	0.0	0.04	13.94	0.00	2.169	12.76	3.57	6.6	93.1	0.3	-1.15	1.34	0.77	0.74	2.08	16080	1977	15	0	12	0	0	logfile
✔	8D96	27256	2023-11-14	2022-06-09	3.35	4.21	3.32	3.9	0.002	0.58	0.0	0.04	17.10	0.00	1.836	7.87	0.11	2.5	97.3	0.2	2.00	0.89	0.85	1.96	3.9	0.002	0.47	0.0	0.04	17.22	0.00	1.455	5.78	0.32	2.6	97.2	0.2	2.16	0.41	0.90	0.88	1.84	9203	1056	6	30	4	0	0	logfile
✔	7WKS	32568	2023-11-13	2022-01-11	3.0	2.57	—	3.0	0.002	0.54	0.0	0.04	13.07	0.00	2.162	7.24	0.00	1.1	98.9	0.0	1.77	0.60	0.81	2.12	3.0	0.003	0.55	0.0	0.04	16.04	0.00	2.218	8.33	0.78	0.8	99.2	0.0	1.85	0.91	0.59	0.83	1.38	5874	754	2	0	0	0	0	logfile
✔	8C8P	16490	2023-11-13	2023-01-20	4.1	5.09	4.13	5.5	0.002	0.67	0.0	0.05	13.50	0.00	2.267	6.06	0.00	2.6	97.4	0.0	-2.08	0.66	0.67	—	5.0	0.003	0.74	0.0	0.04	13.37	0.00	2.169	18.39	0.00	4.8	95.2	0.0	-1.28	1.17	0.68	0.71	—	2449	314	2	0	0	0	0	logfile
✔	7JGE	22324	2023-11-17	2020-07-19	4.0	4.23	—	4.2	0.002	0.44	0.0	0.05	13.35	0.00	2.115	14.01	0.00	3.7	96.3	0.0	1.11	0.54	0.54	—	4.2	0.003	0.55	0.0	0.06	15.53	0.00	2.042	17.29	0.08	7.3	92.7	0.0	0.23	0.64	0.60	0.65	—	20315	1437	1	0	0	0	8508	logfile
✔	6Z3Y	11066	2023-11-13	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.32	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.003	0.83	0.0	0.05	14.87	0.00	2.036	17.43	0.31	8.8	91.2	0.0	-0.62	0.72	0.59	0.71	0.99	6131	771	2	0	0	0	0	logfile
✔	6VX4	21429	2023-11-14	2020-02-21	3.12	3.57	3.17	3.4	0.002	0.43	0.0	0.04	12.96	0.00	2.173	11.38	0.38	8.1	91.9	0.0	-4.73	0.80	0.73	1.78	3.3	0.004	0.80	0.0	0.05	15.92	0.00	2.105	22.34	0.38	6.3	93.7	0.0	-1.35	1.49	0.84	0.83	2.39	9813	1265	9	0	0	0	0	logfile
✔	7F1S	31424	2023-11-14	2021-06-09	2.8	3.44	—	3.2	0.002	0.55	0.0	0.04	10.91	0.00	2.228	9.48	0.00	3.5	96.5	0.0	-1.65	0.69	0.76	1.35	3.2	0.003	0.69	0.0	0.04	14.92	0.00	2.156	13.22	2.68	4.0	96.0	0.0	0.06	1.18	0.70	0.80	2.16	6209	847	4	0	0	0	0	logfile
✔	8HC5	34652	2023-11-15	2022-11-01	3.43	3.51	3.37	3.6	0.002	0.53	0.0	0.04	15.57	0.00	2.249	5.34	0.00	4.0	96.0	0.0	-0.79	0.60	0.59	1.15	3.6	0.003	0.59	0.0	0.04	15.73	0.00	2.091	9.89	0.31	5.1	94.9	0.0	-0.44	0.58	0.69	0.73	2.01	11400	1493	6	0	1	0	0	logfile
✔	7XSL	33426	2023-11-15	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.70	0.0	0.04	18.25	0.01	1.810	33.93	0.00	0.0	0.0	0.0	—	1.01	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7X13	32933	2023-11-18	2022-02-23	3.7	3.38	—	3.3	0.002	0.51	0.0	0.04	14.42	0.00	2.152	8.27	0.04	1.7	98.3	0.0	2.42	0.50	0.55	1.11	3.3	0.003	0.63	0.0	0.04	16.22	0.00	2.101	12.23	0.61	3.2	96.8	0.0	1.37	1.02	0.52	0.60	1.32	21248	2668	12	0	0	0	0	logfile
✔	8F1J	28785	2023-11-20	2022-11-05	2.6	3.66	2.67	3.1	0.002	0.44	0.0	0.04	13.78	0.00	2.096	4.27	0.98	2.2	97.8	0.0	0.89	0.90	0.85	2.55	3.1	0.004	0.54	0.0	0.04	15.69	0.00	2.049	4.71	0.89	2.9	97.1	0.0	1.20	1.60	0.88	0.85	2.17	30829	3688	13	94	3	7	0	logfile
✔	6WFQ	21652	2023-11-13	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.9	0.004	0.94	0.0	0.04	19.01	0.00	2.180	23.34	1.60	7.0	93.0	0.0	-0.54	1.00	0.85	0.81	0.67	4164	447	4	30	0	0	0	logfile
✔	7SZi	25567	2023-11-14	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.004	0.54	0.0	0.04	14.28	0.00	2.186	3.74	0.96	3.8	96.1	0.1	0.05	0.24	0.72	0.88	5.17	8089	1038	4	0	0	0	0	logfile
✔	7XSM	33427	2023-11-15	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.77	0.0	0.04	20.06	0.01	1.776	49.17	0.00	0.0	0.0	0.0	—	1.71	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7KAT	22783	2023-11-15	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.90	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.005	0.67	0.0	0.04	12.03	0.00	2.069	13.13	0.00	3.4	96.6	0.0	1.88	1.32	0.66	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7FHo	31588	2023-11-17	2021-07-29	2.8	2.98	—	3.1	0.002	0.57	0.0	0.04	12.96	0.00	2.179	6.20	0.17	3.1	96.9	0.0	1.34	0.64	0.80	3.27	3.0	0.003	0.56	0.0	0.04	15.70	0.00	2.142	6.86	0.61	2.8	97.2	0.0	2.82	1.11	0.65	0.84	2.97	10648	1294	4	0	6	0	0	logfile
✔	8CW9	27024	2023-11-20	2022-05-18	3.46	2.48	—	2.2	0.002	0.67	0.0	0.05	13.48	0.01	2.196	3.46	1.25	5.7	94.1	0.1	-1.23	0.74	0.73	2.43	2.2	0.004	0.77	0.0	0.05	15.66	0.00	2.153	14.19	0.58	4.7	95.3	0.0	-0.36	1.51	0.77	0.76	1.93	20229	2658	18	0	3	0	0	logfile

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