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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SYN | 25534 | 2024-03-17 | 2021-11-25 | 4.0 | 3.26 | 3.82 | 3.2 | 0.002 | 0.49 | 0.0 | 0.03 | 21.99 | 0.00 | 2.115 | 9.69 | 0.00 | 4.8 | 95.2 | 0.0 | -0.83 | 0.64 | 0.72 | — | 3.2 | 0.005 | 0.70 | 1.0 | 0.04 | 22.42 | 0.01 | 1.745 | 13.08 | 3.70 | 8.4 | 91.6 | 0.0 | -1.28 | 1.03 | 0.65 | 0.74 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✔ | 8HRB | 34966 | 2024-03-19 | 2022-12-15 | 3.78 | 3.89 | 3.82 | 3.8 | 0.002 | 0.48 | 0.0 | 0.04 | 15.52 | 0.00 | 2.187 | 8.99 | 0.02 | 4.4 | 95.6 | 0.0 | -0.91 | 0.78 | 0.79 | 1.45 | 3.8 | 0.002 | 0.52 | 0.0 | 0.04 | 16.79 | 0.00 | 2.125 | 9.71 | 1.52 | 3.9 | 96.1 | 0.0 | 0.25 | 0.39 | 0.78 | 0.79 | 1.09 | 96352 | 11778 | 28 | 102 | 8 | 0 | 0 | logfile |
✔ | 7UY6 | 26865 | 2024-03-17 | 2022-05-06 | 2.9 | 2.49 | 2.94 | 3.0 | 0.002 | 0.44 | 0.0 | 0.04 | 18.33 | 0.00 | 2.215 | 4.00 | 0.06 | 1.7 | 98.3 | 0.0 | 1.19 | 0.70 | 0.81 | 3.09 | 2.9 | 0.002 | 0.50 | 0.0 | 0.04 | 19.72 | 0.00 | 2.205 | 5.37 | 2.23 | 2.4 | 97.6 | 0.1 | 1.38 | 0.42 | 0.70 | 0.84 | 2.66 | 18746 | 1847 | 9 | 170 | 1 | 0 | 0 | logfile |
✔ | 8D0K | 27107 | 2024-03-21 | 2022-05-26 | 4.27 | 4.58 | 4.33 | 4.3 | 0.002 | 0.50 | 0.0 | 0.04 | 14.91 | 0.00 | 2.188 | 9.52 | 0.06 | 3.7 | 96.1 | 0.1 | 0.70 | 0.82 | 0.81 | — | 4.3 | 0.002 | 0.53 | 0.0 | 0.04 | 14.88 | 0.00 | 2.195 | 9.99 | 0.03 | 4.0 | 95.9 | 0.1 | 0.71 | 0.28 | 0.82 | 0.80 | — | 31011 | 3820 | 8 | 20 | 0 | 0 | 0 | logfile |
✔ | 8C90 | 16497 | 2024-03-12 | 2023-01-21 | 3.15 | 3.51 | 3.31 | 3.1 | 0.002 | 0.38 | 0.0 | 0.03 | 22.69 | 0.00 | 1.866 | 5.45 | 0.00 | 5.1 | 94.8 | 0.0 | 0.48 | 0.79 | 0.79 | 1.77 | 3.2 | 0.005 | 0.67 | 1.0 | 0.04 | 22.98 | 0.00 | 2.026 | 13.54 | 3.66 | 8.0 | 92.0 | 0.0 | -0.91 | 0.50 | 0.81 | 0.84 | 1.82 | 64726 | 2183 | 22 | 2219 | 0 | 0 | 0 | logfile |
✔ | 7F67 | 31475 | 2024-03-23 | 2021-06-24 | 3.59 | 4.25 | — | 3.8 | 0.002 | 0.53 | 0.0 | 0.04 | 12.72 | 0.00 | 2.187 | 8.17 | 0.09 | 4.9 | 95.1 | 0.0 | 0.36 | 0.87 | 0.84 | 2.31 | 3.8 | 0.004 | 0.58 | 0.0 | 0.04 | 14.29 | 0.00 | 2.115 | 10.16 | 1.54 | 6.4 | 93.6 | 0.0 | 0.50 | 0.31 | 0.87 | 0.85 | 2.07 | 37725 | 5358 | 18 | 0 | 28 | 0 | 0 | logfile |
✔ | 7T8B | 25743 | 2024-03-22 | 2021-12-16 | 3.8 | 2.77 | 3.90 | 2.3 | 0.002 | 0.47 | 0.0 | 0.04 | 8.77 | 0.00 | 2.205 | 7.91 | 1.40 | 4.3 | 95.6 | 0.2 | -0.32 | 0.73 | 0.72 | 2.28 | 2.3 | 0.003 | 0.68 | 0.0 | 0.04 | 15.19 | 0.00 | 2.099 | 15.52 | 3.21 | 5.2 | 94.8 | 0.0 | -0.04 | 1.68 | 0.73 | 0.73 | 1.63 | 33025 | 4131 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EBY | 28002 | 2024-03-19 | 2022-08-31 | 3.6 | 2.60 | 3.53 | 2.1 | 0.002 | 0.47 | 0.0 | 0.04 | 11.97 | 0.00 | 2.142 | 8.09 | 2.23 | 4.3 | 95.6 | 0.0 | 0.93 | 0.71 | 0.72 | 1.81 | 2.1 | 0.005 | 0.78 | 1.0 | 0.05 | 16.65 | 0.00 | 2.078 | 13.80 | 4.62 | 5.2 | 94.7 | 0.0 | 0.11 | 1.39 | 0.74 | 0.73 | 1.39 | 23709 | 2834 | 15 | 45 | 7 | 0 | 0 | logfile |
✔ | 7ZMD | 14795 | 2024-03-20 | 2022-04-19 | 2.93 | 3.18 | 2.97 | 3.2 | 0.002 | 0.52 | 0.0 | 0.08 | 13.13 | 0.01 | 2.146 | 3.80 | 0.00 | 2.5 | 97.5 | 0.0 | 0.93 | 0.68 | 0.78 | 3.52 | 3.2 | 0.003 | 0.67 | 0.0 | 0.10 | 15.55 | 0.00 | 2.083 | 5.11 | 1.41 | 3.2 | 96.8 | 0.0 | 0.47 | 0.56 | 0.72 | 0.83 | 4.12 | 18400 | 1191 | 2 | 0 | 0 | 0 | 9106 | logfile |
✔ | 6XLB | 22238 | 2024-03-15 | 2020-06-28 | 3.8 | 4.01 | — | 3.8 | 0.002 | 0.43 | 0.0 | 0.04 | 13.65 | 0.00 | 2.235 | 7.33 | 0.00 | 2.0 | 98.0 | 0.0 | -2.43 | 0.82 | 0.77 | 1.14 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 16.29 | 0.00 | 2.119 | 17.92 | 2.66 | 3.4 | 96.6 | 0.0 | -0.36 | 0.88 | 0.84 | 0.81 | 1.38 | 11180 | 1380 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD7 | 0202 | 2024-03-20 | 2018-08-17 | 3.4 | 3.54 | — | 3.3 | 0.002 | 0.43 | 0.0 | 0.03 | 22.25 | 0.00 | 0.345 | 24.96 | 0.08 | 11.1 | 87.1 | 1.9 | -3.26 | 0.66 | 0.65 | 0.74 | 3.3 | 0.009 | 0.85 | 0.0 | 0.05 | 23.56 | 0.01 | 1.962 | 19.94 | 4.29 | 7.8 | 91.8 | 0.4 | -1.43 | 1.91 | 0.76 | 0.88 | 1.82 | 141153 | 7514 | 52 | 3767 | 234 | 0 | 0 | logfile |
✔ | 7T3U | 25671 | 2024-03-24 | 2021-12-08 | 3.7 | 4.00 | 3.79 | 3.8 | 0.002 | 0.45 | 0.0 | 0.04 | 12.94 | 0.00 | 1.968 | 6.33 | 0.00 | 4.2 | 95.8 | 0.0 | 1.94 | 0.59 | 0.60 | 1.23 | 3.8 | 0.020 | 1.27 | 0.0 | 0.06 | 15.31 | 0.01 | 1.941 | 22.33 | 7.81 | 10.1 | 89.8 | 0.1 | -0.80 | 2.21 | 0.64 | 0.71 | 1.23 | 44501 | 7269 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 7QWS | 14193 | 2024-03-18 | 2022-01-25 | 3.4 | 3.09 | — | 7.2 | 0.002 | 0.46 | 0.0 | 0.03 | 22.90 | 0.00 | 2.011 | 9.44 | 1.65 | 3.7 | 96.3 | 0.0 | 0.47 | 0.23 | 0.02 | -0.02 | 3.0 | 0.004 | 0.88 | 0.0 | 0.04 | 24.72 | 0.01 | 0.987 | 26.15 | 2.43 | 8.3 | 91.7 | 0.1 | -2.38 | 2.16 | 0.52 | 0.59 | 0.52 | 137913 | 7047 | 55 | 3769 | 126 | 0 | 0 | logfile |
✔ | 7PGS | 13394 | 2024-03-14 | 2021-08-15 | 3.4 | 3.61 | 3.34 | 3.4 | 0.002 | 0.40 | 0.0 | 0.03 | 10.77 | 0.00 | 1.972 | 3.57 | 0.66 | 1.2 | 98.8 | 0.0 | -0.33 | 0.80 | 0.79 | 2.03 | 3.4 | 0.004 | 0.55 | 0.0 | 0.04 | 13.30 | 0.00 | 1.884 | 5.95 | 1.25 | 3.6 | 96.3 | 0.0 | 1.35 | 0.72 | 0.82 | 0.82 | 1.35 | 67202 | 4210 | 2 | 0 | 1 | 0 | 33807 | logfile |
✔ | 7PXA | 13695 | 2024-03-25 | 2021-10-08 | 2.8 | 2.56 | — | 2.8 | 0.002 | 0.42 | 0.0 | 0.04 | 9.39 | 0.00 | 2.147 | 3.67 | 1.14 | 1.5 | 98.5 | 0.0 | 2.60 | 0.76 | 0.84 | 2.86 | 2.8 | 0.004 | 0.59 | 0.0 | 0.04 | 15.18 | 0.00 | 2.077 | 5.39 | 2.84 | 2.3 | 97.7 | 0.0 | 2.16 | 1.44 | 0.77 | 0.87 | 2.78 | 46614 | 6187 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UW5 | 26823 | 2024-03-22 | 2022-05-02 | 3.84 | 2.49 | 3.83 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 14.55 | 0.00 | 2.218 | 5.79 | 0.35 | 1.6 | 98.4 | 0.0 | 4.16 | 0.72 | 0.68 | 1.15 | 2.2 | 0.003 | 0.64 | 1.0 | 0.04 | 15.64 | 0.00 | 2.144 | 6.04 | 6.82 | 1.8 | 98.0 | 0.2 | 3.86 | 0.46 | 0.72 | 0.68 | 1.25 | 32340 | 5061 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B0Y | 11972 | 2024-03-24 | 2020-11-23 | 3.6 | 3.87 | 3.41 | 3.7 | 0.002 | 0.42 | 0.0 | 0.04 | 17.19 | 0.00 | 1.954 | 4.30 | 0.02 | 2.1 | 97.9 | 0.0 | -2.96 | 0.75 | 0.78 | 2.05 | 3.7 | 0.005 | 0.64 | 0.0 | 0.04 | 18.89 | 0.00 | 2.017 | 11.26 | 1.95 | 4.5 | 95.5 | 0.0 | -0.12 | 1.23 | 0.75 | 0.78 | 1.75 | 43792 | 4745 | 31 | 274 | 9 | 0 | 0 | logfile |
✔ | 7A4F | 11631 | 2024-03-20 | 2020-08-19 | 3.5 | 3.84 | 3.47 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 11.66 | 0.00 | 2.212 | 6.40 | 3.31 | 2.4 | 97.6 | 0.0 | 1.60 | 0.78 | 0.84 | 1.24 | 3.7 | 0.004 | 0.68 | 4.0 | 0.04 | 15.27 | 0.00 | 1.834 | 11.62 | 3.27 | 2.6 | 97.4 | 0.0 | 2.17 | 2.15 | 0.79 | 0.86 | 0.90 | 141432 | 18540 | 120 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XoN | 33353 | 2024-03-10 | 2022-05-01 | 3.1 | 3.66 | 2.94 | 3.3 | 0.002 | 0.47 | 0.0 | 0.04 | 12.44 | 0.00 | 2.325 | 9.45 | 0.00 | 1.5 | 98.5 | 0.0 | 2.61 | 0.57 | 0.88 | 2.21 | 3.3 | 0.004 | 0.52 | 0.0 | 0.04 | 13.80 | 0.00 | 2.294 | 9.32 | 1.24 | 1.3 | 98.7 | 0.0 | 2.64 | 0.41 | 0.59 | 0.91 | 2.40 | 3855 | 524 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZW1 | 14991 | 2024-03-15 | 2022-05-17 | 3.7 | 4.52 | 3.66 | 3.9 | 0.002 | 0.50 | 0.0 | 0.03 | 17.28 | 0.00 | 2.021 | 7.62 | 0.16 | 3.1 | 96.9 | 0.0 | 3.09 | 0.65 | 0.80 | 1.73 | 3.9 | 0.002 | 0.49 | 0.0 | 0.03 | 17.45 | 0.00 | 2.028 | 7.96 | 1.58 | 2.5 | 97.5 | 0.0 | 3.24 | 0.70 | 0.65 | 0.80 | 1.22 | 11807 | 760 | 3 | 0 | 0 | 0 | 5883 | logfile |