Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7S6C	24868	2023-11-15	2021-09-13	3.1	3.69	—	3.3	0.005	0.74	0.0	0.04	14.16	0.01	2.068	4.24	0.00	4.0	96.0	0.0	-0.30	0.82	0.76	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47369	3190	10	0	2	0	23420	logfile
✔	6VQ8	21319	2023-11-15	2020-02-04	3.9	4.52	—	4.2	0.009	0.97	0.0	0.06	10.71	0.00	2.220	3.69	0.78	2.5	97.3	0.2	0.61	0.78	0.73	1.33	4.2	0.004	0.85	0.0	0.05	14.38	0.00	2.037	20.59	0.37	4.2	95.8	0.0	0.86	2.77	0.81	0.81	1.10	60714	8451	35	0	1	0	0	logfile
✔	6KPE	0743	2023-11-15	2019-08-15	2.83	4.04	—	3.7	0.009	0.82	0.0	0.14	13.07	0.00	2.040	13.53	0.00	10.4	89.6	0.0	-5.24	0.83	0.84	3.18	3.5	0.004	0.83	0.0	0.16	15.39	0.00	1.916	10.35	1.34	6.3	93.7	0.0	-0.26	1.70	0.83	0.85	3.31	62184	3936	24	0	12	0	31212	logfile
✔	7XG3	33184	2023-11-20	2022-04-02	3.0	2.77	3.04	3.0	0.007	1.12	0.0	0.07	19.36	0.01	1.641	22.81	1.26	4.1	95.9	0.0	-2.38	0.74	0.68	1.70	3.0	0.003	0.74	0.0	0.04	19.29	0.00	2.098	18.23	2.52	3.8	96.2	0.0	-0.72	0.61	0.77	0.73	1.65	24368	2839	13	128	1	0	0	logfile
✔	7AEK	11747	2023-11-20	2020-09-17	2.5	2.55	—	2.5	0.005	0.87	0.0	0.05	13.77	0.01	1.547	1.89	0.00	2.7	97.3	0.0	-3.80	0.56	0.86	4.32	2.5	0.003	0.69	0.0	0.05	15.74	0.00	2.128	2.96	1.36	3.1	96.9	0.0	0.33	0.47	0.57	0.87	3.75	91116	11808	18	0	0	0	0	logfile
✔	7MDW	23782	2023-11-13	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.65	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.005	0.79	0.0	0.05	15.12	0.00	2.071	19.80	0.56	13.5	86.5	0.0	-3.45	1.37	0.56	0.50	1.94	3392	435	4	0	1	0	0	logfile
✔	7UiF	26544	2023-11-15	2022-03-29	4.6	5.63	4.34	6.7	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.76	0.06	1.9	98.0	0.1	0.62	0.48	0.33	—	6.7	0.003	0.75	0.0	0.05	13.27	0.00	2.026	20.55	0.00	3.5	96.5	0.0	0.05	1.21	0.61	0.62	—	63137	7857	33	0	0	0	0	logfile
✔	8AMW	15527	2023-11-16	2022-08-04	3.0	3.27	3.03	3.2	0.005	0.61	0.0	0.04	11.06	0.01	2.245	3.30	0.44	3.9	96.1	0.0	1.57	0.63	0.87	3.65	3.2	0.003	0.55	0.0	0.04	13.83	0.00	2.142	4.88	1.06	3.7	96.3	0.0	2.47	0.31	0.66	0.88	2.48	15792	2032	21	0	16	5	0	logfile
✔	7TRP	26100	2023-11-14	2022-01-30	2.4	3.12	2.45	2.9	0.006	0.82	0.0	0.06	11.23	0.01	2.287	2.62	0.21	2.0	98.0	0.0	-0.43	0.75	0.88	4.06	2.9	0.004	0.64	0.0	0.04	14.89	0.00	2.163	6.87	1.18	1.7	98.3	0.0	1.54	1.30	0.73	0.88	4.01	8681	1122	6	0	2	0	0	logfile
✔	8ET8	28588	2023-11-14	2022-10-16	3.45	3.65	3.52	3.6	0.003	0.60	0.0	0.04	11.84	0.00	2.035	4.62	0.94	3.8	96.2	0.0	1.27	0.52	0.74	1.41	3.6	0.003	0.56	0.0	0.03	15.08	0.00	1.978	7.29	0.47	4.5	95.5	0.0	0.69	1.17	0.51	0.78	1.31	8125	532	3	0	3	0	4007	logfile
✔	6ZVi	11457	2023-11-19	2020-07-24	3.0	3.20	3.13	3.0	0.007	0.97	0.0	0.05	17.67	0.01	1.914	5.92	0.02	5.2	94.6	0.2	-2.84	0.55	0.84	2.91	3.0	0.005	0.73	0.0	0.04	17.89	0.01	2.044	12.11	2.50	9.7	90.2	0.1	-1.21	1.87	0.56	0.87	2.34	80088	4918	40	1946	2	0	0	logfile
✔	7QH6	13965	2023-11-20	2021-12-10	3.08	5.04	—	2.4	0.006	0.78	0.0	0.04	16.47	0.01	1.954	6.72	4.29	6.9	93.1	0.0	-1.89	0.69	0.56	1.12	2.2	0.003	0.70	0.0	0.04	16.99	0.00	1.975	19.42	0.21	5.4	94.6	0.0	-0.34	0.71	0.88	0.83	1.00	83425	7113	47	1189	1	0	0	logfile
✔	6CUD	7620	2023-11-18	2018-03-25	3.3	3.61	—	3.5	0.007	1.13	0.0	0.06	12.64	0.02	2.171	6.98	1.47	4.4	95.5	0.1	-3.04	0.71	0.83	1.93	3.5	0.002	0.54	0.0	0.04	13.42	0.00	2.262	3.56	0.16	2.6	97.3	0.1	2.44	1.60	0.72	0.84	1.64	21028	2816	8	0	12	0	0	logfile
✔	6KPK	0749	2023-11-15	2019-08-15	2.3	3.44	—	3.0	0.006	0.71	0.0	0.06	12.55	0.00	2.127	4.93	0.37	5.5	94.5	0.0	-3.66	0.84	0.88	4.21	3.2	0.004	0.73	1.0	0.13	14.36	0.00	1.954	5.48	0.66	3.8	96.2	0.0	0.92	0.75	0.83	0.89	4.27	62209	3936	24	0	24	0	31225	logfile
✔	7UKE	26578	2023-11-14	2022-04-01	3.01	3.37	3.05	3.3	0.003	0.63	0.0	0.04	12.43	0.01	2.143	8.00	0.00	1.2	98.8	0.0	1.28	0.57	0.82	2.78	3.3	0.003	0.55	0.0	0.04	14.50	0.01	2.121	8.87	0.47	2.0	98.0	0.0	2.51	0.63	0.62	0.86	2.35	8000	1036	5	0	4	0	0	logfile
✔	6VQH	21350	2023-11-17	2020-02-05	4.4	4.72	—	4.6	0.008	1.00	0.0	0.07	11.13	0.00	2.336	5.47	2.06	2.6	97.2	0.2	0.63	0.64	0.67	—	4.6	0.004	0.83	0.0	0.05	11.90	0.00	2.130	19.29	0.00	3.1	96.9	0.0	1.38	1.04	0.68	0.73	—	19338	2813	18	0	0	0	0	logfile
✔	7S6D	24875	2023-11-15	2021-09-13	3.1	3.82	—	3.4	0.005	0.72	0.0	0.04	13.60	0.01	2.083	3.29	0.00	3.4	96.6	0.0	-0.10	0.86	0.81	3.05	3.4	0.002	0.52	0.0	0.04	14.23	0.00	2.020	5.24	0.04	3.1	96.9	0.0	0.48	1.13	0.86	0.83	2.90	46193	3112	8	0	1	0	22846	logfile
✔	7MGL	23828	2023-11-16	2021-04-12	2.9	3.03	—	3.0	0.013	0.84	0.0	0.04	14.84	0.00	2.177	5.52	3.10	5.1	94.9	0.0	-1.33	0.64	0.84	3.67	3.0	0.003	0.66	0.0	0.04	16.04	0.00	2.224	5.39	2.14	4.3	95.7	0.0	1.56	0.84	0.63	0.86	3.34	15476	1888	8	0	8	0	0	logfile
✘	7MBV	23748	2023-11-20	2021-04-01	2.8	3.34	—	3.0	0.003	0.59	0.0	0.04	12.63	0.01	2.280	6.88	0.00	2.3	97.7	0.0	1.48	0.77	0.82	3.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30804	3984	8	0	24	0	0	logfile
✔	8AQU	15590	2023-11-13	2022-08-13	3.22	3.49	3.40	3.5	0.003	0.62	0.0	0.04	14.24	0.00	2.240	8.39	0.15	8.2	91.8	0.0	-1.47	0.54	0.66	1.53	3.5	0.003	0.68	0.0	0.04	16.71	0.00	2.129	11.22	0.44	8.8	91.2	0.0	-1.74	0.63	0.55	0.71	1.50	6340	777	4	0	3	0	0	logfile

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