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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LKH | 23408 | 2024-03-10 | 2021-02-02 | 3.5 | 3.06 | — | 3.6 | 0.006 | 0.94 | 0.0 | 0.05 | 13.33 | 0.01 | 1.903 | 8.34 | 0.22 | 5.5 | 94.5 | 0.0 | -0.99 | 0.64 | 0.78 | 3.39 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 15.54 | 0.00 | 2.242 | 6.29 | 3.70 | 4.9 | 95.1 | 0.0 | 0.04 | 0.46 | 0.65 | 0.79 | 3.28 | 4179 | 516 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Mo9 | 23921 | 2024-03-14 | 2021-05-01 | 4.0 | 3.76 | — | 4.0 | 0.010 | 1.23 | 0.0 | 0.06 | 17.88 | 0.01 | 1.983 | 34.57 | 0.38 | 9.2 | 90.8 | 0.0 | -2.30 | 0.77 | 0.81 | — | 4.0 | 0.004 | 1.00 | 1.0 | 0.05 | 16.88 | 0.00 | 2.179 | 19.71 | 3.12 | 5.6 | 94.3 | 0.1 | -1.41 | 1.18 | 0.77 | 0.80 | — | 9755 | 1247 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7QNB | 14073 | 2024-03-16 | 2021-12-20 | 3.1 | 3.62 | — | 3.3 | 0.003 | 0.46 | 0.0 | 0.04 | 11.20 | 0.00 | 2.241 | 5.47 | 0.56 | 1.7 | 98.3 | 0.0 | 1.87 | 0.75 | 0.84 | 3.27 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 12.66 | 0.00 | 2.153 | 8.35 | 1.57 | 2.5 | 97.5 | 0.0 | 1.38 | 2.14 | 0.78 | 0.89 | 3.75 | 14793 | 1767 | 15 | 0 | 24 | 0 | 0 | logfile |
✔ | 7APD | 11852 | 2024-03-17 | 2020-10-16 | 3.9 | 4.06 | — | 4.0 | 0.006 | 0.84 | 0.0 | 0.05 | 19.83 | 0.00 | 1.349 | 19.29 | 2.92 | 8.5 | 91.4 | 0.1 | -1.98 | 0.76 | 0.73 | 1.33 | 4.0 | 0.003 | 0.57 | 0.0 | 0.04 | 19.85 | 0.00 | 2.076 | 9.66 | 2.29 | 5.7 | 94.3 | 0.0 | -0.33 | 0.52 | 0.78 | 0.76 | 0.90 | 17296 | 2020 | 10 | 76 | 0 | 0 | 0 | logfile |
✔ | 7VF2 | 31946 | 2024-03-16 | 2021-09-10 | 3.0 | 3.55 | — | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 15.88 | 0.00 | 2.095 | 9.72 | 0.26 | 3.7 | 96.3 | 0.0 | -2.72 | 0.77 | 0.84 | 1.85 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 17.88 | 0.00 | 2.166 | 10.23 | 1.49 | 3.0 | 97.0 | 0.0 | 1.40 | 0.59 | 0.75 | 0.84 | 1.24 | 13565 | 1716 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC0 | 4379 | 2024-03-18 | 2018-04-16 | 3.8 | 4.10 | — | 4.0 | 0.002 | 0.52 | 0.0 | 0.03 | 22.05 | 0.00 | 2.283 | 3.44 | 0.04 | 5.9 | 94.0 | 0.1 | -4.24 | 0.72 | 0.66 | 1.32 | 3.9 | 0.007 | 0.82 | 0.0 | 0.04 | 23.32 | 0.01 | 1.941 | 26.07 | 5.31 | 12.2 | 87.7 | 0.1 | -2.49 | 2.62 | 0.78 | 0.77 | 1.15 | 84138 | 2950 | 28 | 2848 | 0 | 0 | 0 | logfile |
✔ | 6KiX | 0694 | 2024-03-20 | 2019-07-20 | 4.1 | 4.17 | — | 4.1 | 0.006 | 0.84 | 0.0 | 0.05 | 22.72 | 0.01 | 2.219 | 3.30 | 0.00 | 8.6 | 91.4 | 0.0 | -3.74 | 0.71 | 0.73 | — | 4.1 | 0.003 | 0.62 | 0.0 | 0.04 | 23.00 | 0.00 | 2.144 | 10.56 | 0.00 | 7.1 | 92.9 | 0.0 | -1.36 | 0.84 | 0.73 | 0.76 | — | 19900 | 1763 | 15 | 290 | 1 | 0 | 0 | logfile |
✔ | 7QNA | 14072 | 2024-03-16 | 2021-12-20 | 3.0 | 3.58 | — | 3.3 | 0.003 | 0.48 | 0.0 | 0.04 | 11.46 | 0.00 | 2.271 | 4.69 | 0.76 | 1.2 | 98.8 | 0.0 | 1.88 | 0.76 | 0.86 | 3.66 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 13.34 | 0.00 | 2.168 | 7.88 | 1.45 | 2.0 | 98.0 | 0.0 | 1.26 | 2.63 | 0.77 | 0.89 | 4.11 | 14777 | 1763 | 16 | 0 | 29 | 0 | 0 | logfile |
✔ | 8GVE | 34291 | 2024-03-11 | 2022-09-15 | 3.17 | 3.38 | 3.19 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 14.33 | 0.01 | 2.113 | 5.93 | 0.00 | 5.7 | 94.3 | 0.0 | 0.31 | 0.64 | 0.80 | 1.68 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 16.02 | 0.00 | 2.229 | 6.17 | 1.71 | 5.5 | 94.5 | 0.0 | 0.93 | 0.27 | 0.64 | 0.82 | 1.13 | 8054 | 1020 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GVC | 34290 | 2024-03-11 | 2022-09-14 | 2.89 | 3.10 | 2.90 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 14.66 | 0.00 | 1.670 | 13.40 | 1.14 | 2.0 | 97.8 | 0.2 | 2.06 | 0.64 | 0.82 | 2.43 | 3.2 | 0.004 | 0.57 | 0.0 | 0.04 | 15.97 | 0.00 | 2.299 | 4.89 | 1.25 | 3.1 | 96.7 | 0.2 | 1.66 | 0.29 | 0.62 | 0.83 | 2.37 | 8080 | 1022 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7PBD | 13290 | 2024-03-16 | 2021-08-02 | 3.04 | 3.81 | 3.11 | 3.5 | 0.005 | 0.76 | 0.0 | 0.10 | 16.57 | 0.00 | 2.062 | 4.44 | 0.00 | 3.8 | 96.2 | 0.0 | 0.14 | 0.77 | 0.82 | 3.43 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 13.97 | 0.00 | 2.187 | 6.30 | 1.07 | 2.9 | 97.0 | 0.1 | 1.03 | 0.38 | 0.78 | 0.85 | 2.83 | 14822 | 1784 | 15 | 0 | 25 | 0 | 0 | logfile |
✘ | 8G6X | 29787 | 2024-03-19 | 2023-02-16 | 2.31 | 1.96 | 2.20 | 2.0 | 0.011 | 0.97 | 0.0 | 0.06 | 23.48 | 0.02 | 1.474 | 7.58 | 5.85 | 4.1 | 95.8 | 0.2 | -2.02 | 0.68 | 0.83 | 5.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93873 | 3177 | 72 | 3037 | 252 | 3462 | 0 | logfile |
✔ | 7BC6 | 12140 | 2024-03-10 | 2020-12-18 | 3.2 | 3.48 | 3.20 | 3.4 | 0.008 | 0.90 | 0.0 | 0.05 | 13.65 | 0.01 | 2.145 | 9.76 | 0.92 | 7.0 | 93.0 | 0.0 | -1.77 | 0.64 | 0.85 | 2.92 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 15.26 | 0.00 | 2.203 | 7.74 | 2.29 | 4.2 | 95.8 | 0.0 | 0.33 | 0.28 | 0.58 | 0.84 | 2.09 | 4178 | 549 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KiV | 9999 | 2024-03-21 | 2019-07-20 | 4.0 | 4.16 | — | 4.0 | 0.007 | 0.90 | 0.0 | 0.05 | 22.70 | 0.01 | 2.263 | 5.24 | 0.00 | 9.6 | 90.4 | 0.0 | -3.80 | 0.75 | 0.75 | — | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 24.01 | 0.00 | 2.101 | 12.11 | 3.07 | 6.2 | 93.8 | 0.0 | -1.49 | 0.83 | 0.77 | 0.78 | — | 20719 | 1865 | 16 | 290 | 1 | 0 | 0 | logfile |
✔ | 6GC6 | 4381 | 2024-03-12 | 2018-04-17 | 4.3 | 5.02 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 22.33 | 0.00 | 2.229 | 5.26 | 0.00 | 6.0 | 93.9 | 0.1 | -3.94 | 0.74 | 0.57 | — | 4.5 | 0.006 | 0.63 | 0.0 | 0.03 | 23.05 | 0.00 | 1.991 | 23.74 | 0.00 | 8.8 | 91.2 | 0.0 | -1.84 | 2.11 | 0.91 | 0.85 | — | 61404 | 2118 | 19 | 2092 | 0 | 0 | 0 | logfile |
✔ | 7KMT | 22928 | 2024-03-16 | 2020-11-03 | 3.7 | 4.43 | 3.72 | 3.8 | 0.004 | 0.79 | 0.0 | 0.04 | 15.02 | 0.00 | 2.018 | 7.32 | 0.00 | 6.3 | 93.7 | 0.0 | -0.95 | 0.88 | 0.82 | 1.79 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.51 | 0.00 | 2.172 | 12.30 | 1.13 | 4.9 | 95.1 | 0.0 | 0.12 | 0.58 | 0.88 | 0.83 | 1.78 | 14945 | 1838 | 11 | 0 | 2 | 0 | 0 | logfile |
✔ | 6XYo | 10650 | 2024-03-10 | 2020-01-30 | 2.6 | 2.79 | 2.31 | 2.7 | 0.008 | 0.74 | 0.0 | 0.06 | 12.93 | 0.00 | 2.300 | 5.78 | 0.93 | 2.6 | 97.4 | 0.0 | -2.90 | 0.46 | 0.89 | 5.98 | 2.7 | 0.008 | 0.64 | 0.0 | 0.05 | 17.84 | 0.00 | 2.217 | 3.29 | 4.63 | 4.6 | 95.4 | 0.0 | -1.88 | 0.92 | 0.48 | 0.91 | 5.19 | 5490 | 800 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KiW | 0693 | 2024-03-20 | 2019-07-20 | 4.0 | 4.12 | — | 4.0 | 0.006 | 0.89 | 0.0 | 0.05 | 22.76 | 0.01 | 2.182 | 4.29 | 0.00 | 9.1 | 90.9 | 0.0 | -3.96 | 0.70 | 0.74 | — | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 23.81 | 0.00 | 2.113 | 11.58 | 2.13 | 6.5 | 93.5 | 0.0 | -1.26 | 0.74 | 0.72 | 0.77 | — | 20225 | 1809 | 16 | 289 | 1 | 0 | 0 | logfile |
✔ | 6QS4 | 4621 | 2024-03-21 | 2019-02-20 | 4.2 | 7.28 | 4.28 | 6.5 | 0.009 | 1.07 | 0.0 | 0.06 | 11.03 | 0.01 | 2.235 | 8.01 | 0.10 | 8.4 | 91.6 | 0.0 | -3.77 | 0.83 | 0.65 | — | 6.5 | 0.003 | 0.66 | 0.0 | 0.04 | 12.13 | 0.00 | 2.078 | 19.80 | 0.00 | 5.2 | 94.8 | 0.0 | 0.21 | 1.07 | 0.91 | 0.84 | — | 28839 | 3622 | 13 | 0 | 11 | 0 | 0 | logfile |
✔ | 6R69 | 4733 | 2024-03-15 | 2019-03-26 | 3.65 | 4.14 | 3.57 | 3.7 | 0.005 | 0.90 | 0.0 | 0.04 | 14.42 | 0.01 | 2.191 | 13.18 | 0.15 | 9.8 | 89.8 | 0.4 | -3.99 | 0.75 | 0.76 | 0.73 | 3.8 | 0.003 | 0.92 | 0.0 | 0.05 | 15.98 | 0.01 | 2.083 | 15.30 | 1.60 | 7.2 | 92.7 | 0.1 | 0.11 | 0.94 | 0.76 | 0.82 | 0.89 | 12541 | 1629 | 10 | 0 | 0 | 0 | 0 | logfile |