Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JXA	9892	2023-11-16	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.005	1.04	0.0	0.05	11.62	0.01	2.085	25.04	0.00	17.4	79.8	2.8	-2.41	0.95	0.65	0.59	—	14100	2244	1	0	0	0	0	logfile
✔	6HDD	0204	2023-11-19	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✘	7CQ7	30438	2023-11-16	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.33	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13810	1766	8	0	9	0	0	logfile
✔	8D6X	27225	2023-11-17	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.003	0.68	0.0	0.04	14.52	0.00	2.006	31.08	0.17	4.9	95.1	0.0	0.20	4.65	0.78	0.54	0.09	68362	8957	41	0	0	0	0	logfile
✔	7WD9	32435	2023-11-17	2021-12-21	3.7	4.02	—	3.8	0.003	0.46	0.0	0.04	7.35	0.00	1.967	2.78	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.003	0.64	0.0	0.04	13.62	0.00	1.877	11.74	0.23	5.5	94.4	0.1	-0.85	1.33	0.75	0.68	1.07	69720	4533	9	0	0	0	34404	logfile
✘	2XEA	1730	2023-11-15	2010-05-12	4.6	4.10	—	4.2	0.012	2.12	0.0	0.12	20.46	0.02	1.226	2.63	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile
✔	6FU8	4319	2023-11-13	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	8G6i	29770	2023-11-15	2023-02-15	4.23	4.53	4.35	4.2	0.003	0.68	0.0	0.05	13.10	0.01	2.143	10.55	0.00	9.3	90.4	0.3	-3.49	0.69	0.42	—	4.2	0.003	0.72	0.0	0.05	13.49	0.00	2.145	16.76	0.00	11.4	88.3	0.2	-3.44	2.50	0.72	0.50	—	13287	1665	5	0	4	0	0	logfile
✔	5A8L	3099	2023-11-15	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.007	1.04	0.0	0.05	18.05	0.01	1.970	24.69	1.52	12.2	86.5	1.3	-3.20	1.88	0.23	0.63	0.56	12264	624	9	347	0	0	0	logfile
✔	8EXP	28658	2023-11-14	2022-10-25	4.2	4.47	4.29	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.6	0.003	0.70	0.0	0.04	13.28	0.00	2.061	14.99	0.00	4.7	95.3	0.0	0.30	1.14	0.64	0.70	—	9024	1078	4	0	2	0	0	logfile
✘	5ZWM	6972	2023-11-14	2018-05-16	3.4	3.37	—	3.3	0.007	1.15	10.0	0.06	12.54	0.01	1.786	18.95	0.72	5.9	93.5	0.6	-3.22	0.51	0.43	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111041	12858	61	634	8	0	0	logfile
✔	7XoB	33343	2023-11-21	2022-05-01	3.3	2.37	3.35	2.1	0.005	0.92	12.0	0.08	13.62	0.01	1.329	8.08	0.57	4.9	95.0	0.2	-3.07	0.57	0.43	1.44	2.1	0.004	0.78	0.0	0.05	16.37	0.00	2.122	11.85	0.43	4.8	95.2	0.0	-1.01	1.25	0.74	0.78	2.10	34108	4260	10	0	39	0	0	logfile
✘	6KN8	0729	2023-11-15	2019-08-03	4.8	8.89	—	8.4	0.019	1.81	10.0	0.10	12.39	0.01	2.211	9.21	0.41	2.0	97.4	0.5	-0.24	0.74	0.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60966	7669	44	0	15	0	0	logfile
✔	7VZF	32227	2023-11-13	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	0.93	0.0	0.05	18.70	0.00	2.192	14.23	5.32	20.2	79.8	0.0	-4.30	1.92	0.37	0.63	-0.01	2628	363	3	0	0	0	0	logfile
✔	6PMJ	20395	2023-11-14	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.04	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.004	0.74	0.0	0.04	17.65	0.00	1.804	27.04	0.65	11.2	88.7	0.1	-2.54	1.68	0.89	0.77	0.05	57984	3453	10	110	4	0	28609	logfile
✔	6XTB	10618	2023-11-13	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	7JGF	22325	2023-11-13	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7XZZ	33535	2023-11-17	2022-06-03	4.07	5.32	3.99	4.6	0.006	0.92	0.0	0.06	25.15	0.00	1.717	11.14	0.15	1.7	98.3	0.0	0.69	0.70	0.43	—	4.6	0.004	0.65	0.0	0.04	25.48	0.00	2.040	13.20	0.07	1.7	98.3	0.0	1.39	0.89	0.87	0.80	—	18623	1554	14	310	0	0	0	logfile
✔	8ANE	15540	2023-11-22	2022-08-05	3.2	2.95	3.14	3.2	0.003	0.64	0.0	0.04	15.69	0.01	2.198	3.35	0.93	4.6	95.4	0.0	-1.93	0.55	0.43	0.13	3.1	0.004	0.71	0.0	0.04	17.72	0.01	1.775	11.73	0.49	5.9	94.1	0.0	-1.40	2.66	0.66	0.64	1.04	36740	2212	8	66	0	0	18195	logfile
✔	7NK2	12429	2023-11-20	2021-02-17	4.84	4.93	—	4.8	0.004	0.73	2.0	0.05	13.61	0.01	1.907	8.81	0.32	4.3	95.7	0.0	-0.71	0.61	0.43	—	4.8	0.003	0.66	0.0	0.04	13.83	0.00	1.914	17.59	0.00	5.7	94.3	0.0	-0.91	4.61	0.73	0.68	—	28776	1794	6	23	0	0	13868	logfile

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