Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6K3o	9910	2023-11-20	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	16.09	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31508	3790	48	0	36	0	0	logfile
✔	8A3B	15110	2023-11-16	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	2.1	0.004	0.59	0.0	0.04	16.26	0.00	2.134	6.73	0.49	1.6	98.4	0.0	2.23	0.49	0.74	0.77	2.04	14448	1792	7	0	0	0	0	logfile
✔	7M4Z	23671	2023-11-20	2021-03-22	2.92	1.87	—	1.6	0.005	0.54	0.0	0.03	15.17	0.02	1.833	4.61	0.00	3.0	96.9	0.2	1.09	0.77	0.72	2.81	2.5	0.004	0.68	0.0	0.04	16.08	0.01	1.687	6.71	2.16	3.7	96.1	0.2	0.41	0.92	0.79	0.76	2.71	138172	5625	70	4373	190	229	0	logfile
✔	7XD5	33136	2023-11-14	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	13.91	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.004	0.64	0.0	0.04	15.34	0.00	1.950	6.11	0.00	0.0	0.0	0.0	—	1.39	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	7AJQ	11806	2023-11-14	2020-09-29	4.0	3.67	4.30	4.2	0.002	0.55	0.0	0.03	13.10	0.00	2.208	12.84	0.00	3.5	96.5	0.0	-0.98	0.76	0.76	—	4.2	0.003	0.92	0.0	0.05	15.83	0.00	2.139	20.36	0.21	3.6	96.4	0.0	0.85	0.86	0.77	0.77	—	9210	1222	7	0	0	0	0	logfile
✔	8E55	27903	2023-11-15	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✔	7E9C	31029	2023-11-18	2021-03-04	3.5	4.28	3.62	4.0	0.003	0.58	0.0	0.03	26.96	0.00	2.221	12.74	0.14	3.3	96.7	0.0	0.16	0.78	0.69	0.28	4.0	0.004	0.68	0.0	0.04	28.25	0.00	2.139	17.73	0.69	3.9	96.1	0.0	-0.12	1.25	0.82	0.77	0.57	12338	898	11	260	0	0	0	logfile
✔	7WB0	32391	2023-11-15	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	18.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.003	0.57	0.0	0.03	19.30	0.00	2.126	7.96	0.14	4.7	95.2	0.1	0.59	1.05	0.71	0.77	1.11	10096	797	4	175	0	0	0	logfile
✔	7EZ2	31386	2023-11-14	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.94	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.007	0.85	0.0	0.05	15.80	0.01	1.484	7.35	0.00	0.0	0.0	0.0	—	1.04	0.73	0.89	—	8698	0	3	406	31	0	0	logfile
✔	6X32	22015	2023-11-15	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.9	0.004	0.67	0.0	0.04	13.24	0.00	2.114	9.22	0.43	3.1	96.9	0.0	0.55	1.68	0.60	0.74	1.86	114280	14744	16	0	1416	0	0	logfile
✔	7YCG	33738	2023-11-14	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	14.85	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.67	0.0	0.04	15.91	0.00	1.847	33.58	0.00	0.0	0.0	0.0	—	0.32	0.95	0.90	—	8661	0	2	404	4	0	0	logfile
✔	7BL3	12216	2023-11-21	2021-01-18	3.5	3.69	—	3.5	0.002	0.48	0.0	0.03	14.11	0.00	2.089	12.43	0.03	6.4	93.6	0.0	-1.33	0.75	0.79	1.02	3.5	0.003	0.59	0.0	0.03	15.26	0.00	2.015	15.70	0.48	8.1	91.9	0.0	-1.52	0.54	0.75	0.82	0.94	92831	3612	39	3021	2	27	0	logfile
✔	6GC0	4379	2023-11-20	2018-04-16	3.8	4.10	—	4.0	0.002	0.52	0.0	0.03	12.29	0.00	2.283	3.44	0.04	5.9	94.0	0.1	-4.24	0.72	0.66	1.32	3.9	0.007	0.86	0.0	0.04	16.08	0.01	1.971	27.40	1.84	11.9	88.0	0.1	-2.47	2.62	0.78	0.77	1.14	84138	2950	28	2848	0	0	0	logfile
✔	6GC6	4381	2023-11-15	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.007	0.68	0.0	0.04	15.59	0.00	1.991	27.18	0.00	9.2	90.8	0.0	-2.08	2.14	0.91	0.85	—	61404	2118	19	2092	0	0	0	logfile
✔	8CoM	16777	2023-11-15	2023-02-28	3.3	3.62	3.41	3.7	0.004	0.57	0.0	0.03	28.74	0.00	2.228	8.93	0.34	1.7	98.3	0.0	2.02	0.70	0.82	1.34	3.7	0.003	0.56	0.0	0.03	28.79	0.00	2.194	9.19	0.69	1.2	98.8	0.0	2.37	0.92	0.67	0.80	0.83	10705	708	10	254	0	0	0	logfile
✔	6GC7	4382	2023-11-13	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.08	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.008	0.82	0.0	0.04	16.01	0.01	1.946	36.20	0.00	10.8	89.1	0.1	-2.70	1.71	0.91	0.87	—	54410	1738	17	1901	0	0	0	logfile
✔	6GBZ	4378	2023-11-20	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.82	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.004	0.68	0.0	0.04	15.88	0.01	1.991	18.14	0.84	10.4	89.4	0.2	-2.07	0.87	0.78	0.77	0.99	86401	3074	29	2908	0	0	0	logfile
✔	7M4V	23667	2023-11-20	2021-03-22	2.54	2.36	—	2.4	0.006	0.60	0.0	0.03	15.18	0.02	1.808	2.89	0.00	2.3	97.6	0.2	0.82	0.71	0.79	4.43	2.4	0.003	0.67	0.0	0.04	15.90	0.01	1.810	4.05	1.62	2.3	97.5	0.1	0.08	1.72	0.73	0.86	4.33	86404	3128	48	2847	162	802	0	logfile
✔	6T2V	10370	2023-11-18	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.84	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.003	0.69	0.0	0.04	15.62	0.00	2.140	14.75	0.21	3.5	96.5	0.0	0.58	2.38	0.90	0.80	0.55	23826	2847	4	54	0	0	0	logfile
✔	8G8G	29850	2023-11-16	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.75	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.005	0.67	0.0	0.04	28.99	0.00	2.187	11.69	0.38	3.0	97.0	0.0	1.66	1.59	0.91	0.87	1.67	14558	931	11	348	0	0	0	logfile

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