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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8E2J | 27838 | 2024-03-11 | 2022-08-15 | 3.44 | 3.67 | 3.24 | 3.4 | 0.003 | 0.63 | 0.0 | 0.03 | 15.86 | 0.01 | 2.271 | 3.43 | 2.70 | 2.3 | 97.7 | 0.0 | -0.36 | 0.44 | 0.67 | 0.61 | 3.4 | 0.003 | 0.49 | 0.0 | 0.02 | 17.89 | 0.00 | 2.066 | 11.91 | 3.38 | 1.5 | 98.5 | 0.0 | 3.75 | 1.68 | 0.46 | 0.67 | 0.86 | 6012 | 346 | 4 | 0 | 114 | 0 | 2694 | logfile |
✔ | 7BL4 | 12217 | 2024-03-19 | 2021-01-18 | 2.4 | 3.20 | — | 3.0 | 0.002 | 0.45 | 0.0 | 0.03 | 22.63 | 0.00 | 2.015 | 8.95 | 0.03 | 5.1 | 94.9 | 0.1 | -0.52 | 0.80 | 0.85 | 2.49 | 3.0 | 0.007 | 0.69 | 0.0 | 0.04 | 22.76 | 0.01 | 1.707 | 11.88 | 5.66 | 7.7 | 92.2 | 0.1 | -1.25 | 1.11 | 0.79 | 0.87 | 2.32 | 93560 | 3702 | 47 | 3016 | 9 | 35 | 0 | logfile |
✔ | 8C91 | 16498 | 2024-03-11 | 2023-01-21 | 4.19 | 4.74 | 4.70 | 4.2 | 0.001 | 0.36 | 0.0 | 0.03 | 22.46 | 0.00 | 1.896 | 5.51 | 0.07 | 3.8 | 96.1 | 0.2 | 0.39 | 0.84 | 0.79 | — | 4.2 | 0.005 | 0.71 | 0.0 | 0.04 | 24.09 | 0.01 | 1.946 | 33.40 | 0.00 | 10.5 | 89.4 | 0.1 | -2.06 | 0.97 | 0.86 | 0.85 | — | 59110 | 1860 | 18 | 2077 | 0 | 0 | 0 | logfile |
✔ | 7SYN | 25534 | 2024-03-17 | 2021-11-25 | 4.0 | 3.26 | 3.82 | 3.2 | 0.002 | 0.49 | 0.0 | 0.03 | 21.99 | 0.00 | 2.115 | 9.69 | 0.00 | 4.8 | 95.2 | 0.0 | -0.83 | 0.64 | 0.72 | — | 3.2 | 0.005 | 0.70 | 1.0 | 0.04 | 22.42 | 0.01 | 1.745 | 13.08 | 3.70 | 8.4 | 91.6 | 0.0 | -1.28 | 1.03 | 0.65 | 0.74 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✔ | 7JiL | 22345 | 2024-03-16 | 2020-07-23 | 2.8 | 3.31 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 22.85 | 0.00 | 1.991 | 6.76 | 2.15 | 9.9 | 90.0 | 0.1 | -3.96 | 0.82 | 0.84 | 2.44 | 3.2 | 0.002 | 0.57 | 0.0 | 0.03 | 22.83 | 0.00 | 2.111 | 6.83 | 4.50 | 10.0 | 89.9 | 0.0 | -2.21 | 0.37 | 0.81 | 0.86 | 2.60 | 132739 | 5314 | 54 | 4327 | 0 | 1 | 0 | logfile |
✔ | 7TCP | 25816 | 2024-03-16 | 2021-12-27 | 3.84 | 3.97 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.03 | 9.57 | 0.00 | 2.327 | 4.21 | 1.26 | 2.8 | 97.2 | 0.0 | 2.66 | 0.70 | 0.81 | 2.29 | 3.9 | 0.006 | 0.60 | 0.0 | 0.04 | 12.89 | 0.00 | 2.125 | 6.46 | 2.46 | 4.0 | 96.0 | 0.0 | 1.96 | 0.27 | 0.71 | 0.83 | 2.42 | 14992 | 1912 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 8F6K | 28886 | 2024-03-17 | 2022-11-16 | 3.46 | 3.70 | 3.47 | 3.7 | 0.002 | 0.50 | 0.0 | 0.03 | 14.25 | 0.00 | 1.909 | 10.84 | 0.00 | 6.0 | 93.5 | 0.5 | -0.45 | 0.53 | 0.73 | 2.16 | 3.7 | 0.003 | 0.56 | 0.0 | 0.03 | 15.93 | 0.00 | 1.834 | 12.38 | 1.54 | 7.2 | 92.4 | 0.4 | 0.83 | 0.50 | 0.50 | 0.73 | 2.18 | 17298 | 1132 | 8 | 0 | 4 | 0 | 8586 | logfile |
✔ | 7Z1T | 14452 | 2024-03-17 | 2022-02-25 | 2.26 | 2.85 | 2.32 | 2.6 | 0.003 | 0.55 | 0.0 | 0.03 | 15.04 | 0.00 | 2.163 | 9.13 | 0.00 | 1.1 | 98.9 | 0.0 | 3.21 | 0.75 | 0.87 | 2.74 | 2.6 | 0.002 | 0.48 | 0.0 | 0.03 | 15.67 | 0.00 | 2.222 | 5.31 | 1.72 | 1.1 | 98.9 | 0.0 | 3.60 | 1.30 | 0.67 | 0.91 | 3.27 | 18492 | 2268 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9W | 6306 | 2024-03-17 | 2015-03-16 | 3.9 | 3.93 | — | 3.8 | 0.010 | 1.50 | 0.0 | 0.03 | 24.07 | 0.02 | 1.433 | 8.85 | 0.26 | 6.0 | 92.0 | 2.0 | -1.66 | 0.74 | 0.72 | 0.72 | 3.8 | 0.005 | 0.79 | 1.0 | 0.04 | 24.66 | 0.01 | 1.838 | 20.79 | 6.90 | 7.7 | 91.7 | 0.7 | -0.50 | 1.35 | 0.80 | 0.85 | 1.37 | 135425 | 5661 | 54 | 4675 | 0 | 0 | 0 | logfile |
✔ | 7oHP | 12904 | 2024-03-21 | 2021-05-11 | 3.9 | 5.25 | 4.02 | 3.0 | 0.005 | 0.54 | 0.0 | 0.03 | 22.32 | 0.00 | 1.733 | 6.18 | 1.01 | 4.3 | 95.5 | 0.2 | 1.17 | 0.80 | 0.64 | 0.37 | 3.1 | 0.005 | 0.68 | 0.0 | 0.04 | 23.08 | 0.00 | 1.793 | 24.53 | 2.62 | 8.6 | 91.4 | 0.0 | -1.16 | 1.73 | 0.83 | 0.74 | 0.43 | 143939 | 5290 | 35 | 1781 | 1 | 0 | 63394 | logfile |
✔ | 7Z4H | 14497 | 2024-03-17 | 2022-03-03 | 3.49 | 4.59 | 3.66 | 3.8 | 0.003 | 0.45 | 0.0 | 0.03 | 16.01 | 0.00 | 2.043 | 9.94 | 1.25 | 2.0 | 98.0 | 0.0 | 1.67 | 0.90 | 0.83 | 1.71 | 3.8 | 0.002 | 0.51 | 0.0 | 0.03 | 17.25 | 0.00 | 2.170 | 12.24 | 1.42 | 2.3 | 97.7 | 0.0 | 1.56 | 1.20 | 0.91 | 0.85 | 1.74 | 13900 | 1334 | 4 | 142 | 0 | 0 | 0 | logfile |
✔ | 7QV1 | 14157 | 2024-03-19 | 2022-01-19 | 3.5 | 3.50 | — | 3.2 | 0.002 | 0.51 | 0.0 | 0.03 | 23.66 | 0.00 | 1.575 | 5.96 | 0.41 | 5.1 | 94.8 | 0.1 | -2.06 | 0.73 | 0.82 | 1.19 | 3.2 | 0.004 | 0.66 | 0.0 | 0.04 | 23.82 | 0.00 | 2.026 | 15.20 | 5.64 | 7.6 | 92.4 | 0.1 | -1.13 | 3.29 | 0.75 | 0.85 | 1.21 | 140774 | 5254 | 53 | 4635 | 24 | 0 | 0 | logfile |
✔ | 6GC7 | 4382 | 2024-03-10 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 22.57 | 0.00 | 2.251 | 5.08 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.008 | 0.75 | 0.0 | 0.04 | 23.50 | 0.01 | 1.960 | 31.37 | 0.00 | 10.4 | 89.4 | 0.2 | -2.53 | 1.69 | 0.91 | 0.87 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 7M4W | 23668 | 2024-03-18 | 2021-03-22 | 2.55 | 1.74 | — | 1.6 | 0.006 | 0.55 | 0.0 | 0.03 | 22.94 | 0.01 | 1.760 | 3.08 | 0.02 | 2.8 | 97.0 | 0.2 | 1.38 | 0.77 | 0.74 | 3.81 | 1.5 | 0.008 | 0.91 | 0.0 | 0.05 | 23.15 | 0.01 | 1.620 | 5.07 | 2.85 | 3.5 | 96.4 | 0.2 | 0.27 | 0.91 | 0.80 | 0.77 | 3.76 | 137923 | 5518 | 76 | 4373 | 195 | 797 | 0 | logfile |
✔ | 8C94 | 16501 | 2024-03-11 | 2023-01-21 | 3.8 | 4.29 | 4.13 | 3.8 | 0.002 | 0.41 | 0.0 | 0.03 | 22.44 | 0.00 | 1.610 | 7.44 | 0.00 | 5.3 | 94.7 | 0.0 | 0.23 | 0.79 | 0.79 | 1.17 | 3.9 | 0.006 | 0.74 | 0.0 | 0.04 | 23.16 | 0.01 | 1.946 | 25.45 | 3.87 | 10.3 | 89.6 | 0.1 | -1.91 | 1.43 | 0.81 | 0.84 | 1.30 | 54560 | 2070 | 21 | 1787 | 0 | 0 | 0 | logfile |
✔ | 7oDE | 12826 | 2024-03-19 | 2021-04-29 | 2.84 | 2.98 | 2.78 | 2.9 | 0.003 | 0.38 | 0.0 | 0.03 | 22.76 | 0.01 | 1.949 | 3.00 | 3.32 | 2.0 | 98.0 | 0.0 | -0.12 | 0.82 | 0.80 | 3.61 | 2.8 | 0.006 | 0.62 | 0.0 | 0.04 | 22.90 | 0.01 | 1.866 | 6.28 | 2.98 | 4.2 | 95.8 | 0.0 | -0.16 | 0.54 | 0.85 | 0.84 | 3.35 | 92524 | 1761 | 16 | 1990 | 0 | 0 | 35996 | logfile |
✔ | 7PGS | 13394 | 2024-03-14 | 2021-08-15 | 3.4 | 3.61 | 3.34 | 3.4 | 0.002 | 0.40 | 0.0 | 0.03 | 10.77 | 0.00 | 1.972 | 3.57 | 0.66 | 1.2 | 98.8 | 0.0 | -0.33 | 0.80 | 0.79 | 2.03 | 3.4 | 0.004 | 0.55 | 0.0 | 0.04 | 13.30 | 0.00 | 1.884 | 5.95 | 1.25 | 3.6 | 96.3 | 0.0 | 1.35 | 0.72 | 0.82 | 0.82 | 1.35 | 67202 | 4210 | 2 | 0 | 1 | 0 | 33807 | logfile |
✔ | 8FL0 | 29263 | 2024-03-18 | 2022-12-21 | 2.91 | 3.24 | 3.01 | 3.0 | 0.003 | 0.57 | 0.0 | 0.03 | 20.95 | 0.00 | 1.930 | 2.15 | 0.02 | 1.0 | 99.0 | 0.0 | 1.45 | 0.79 | 0.83 | 3.10 | 3.1 | 0.006 | 0.61 | 0.0 | 0.04 | 21.26 | 0.00 | 1.853 | 6.28 | 1.38 | 2.1 | 97.9 | 0.0 | 0.80 | 0.52 | 0.80 | 0.87 | 3.23 | 83377 | 5867 | 37 | 1679 | 26 | 0 | 0 | logfile |
✔ | 7MVY | 24058 | 2024-03-20 | 2021-05-15 | 2.39 | 3.24 | 1.97 | 3.1 | 0.002 | 0.39 | 0.0 | 0.03 | 6.61 | 0.00 | 2.209 | 3.28 | 0.00 | 0.7 | 99.3 | 0.0 | -0.54 | 0.72 | 0.64 | 0.92 | 3.0 | 0.005 | 0.64 | 0.0 | 0.04 | 13.95 | 0.00 | 1.975 | 12.80 | 2.22 | 3.6 | 96.4 | 0.0 | 1.22 | 1.63 | 0.76 | 0.74 | 2.06 | 26555 | 1694 | 2 | 0 | 0 | 0 | 13337 | logfile |
✔ | 8CWW | 27030 | 2024-03-16 | 2022-05-19 | 2.74 | 3.44 | 2.94 | 3.3 | 0.003 | 0.48 | 0.0 | 0.03 | 24.38 | 0.00 | 2.368 | 2.74 | 0.25 | 2.6 | 97.4 | 0.0 | 0.45 | 0.86 | 0.87 | 3.79 | 3.3 | 0.005 | 0.57 | 0.0 | 0.04 | 25.72 | 0.00 | 2.242 | 3.06 | 1.84 | 3.7 | 96.3 | 0.0 | 1.95 | 0.44 | 0.90 | 0.91 | 2.84 | 13625 | 962 | 12 | 292 | 2 | 0 | 0 | logfile |