Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iRV	35687	2023-11-16	2023-03-19	3.1	3.24	2.89	3.2	0.013	1.78	4.0	0.10	12.27	0.02	2.533	0.26	0.00	2.6	97.4	0.0	0.29	0.68	0.79	3.49	3.2	0.002	0.52	0.0	0.04	14.79	0.00	1.933	5.92	0.00	1.8	98.2	0.0	1.20	0.95	0.66	0.82	2.72	14729	912	4	0	12	0	7182	logfile
✔	7QKF	14040	2023-11-13	2021-12-17	2.83	2.46	2.72	2.8	0.012	2.23	2.0	0.21	13.42	0.01	2.598	0.26	0.00	8.4	91.6	0.0	-2.72	0.40	0.79	6.57	2.8	0.004	1.05	0.0	0.25	17.49	0.00	2.418	5.03	2.31	3.4	96.6	0.0	-3.42	1.39	0.40	0.86	6.09	3783	249	6	0	0	0	1926	logfile
✔	7LJR	23400	2023-11-19	2021-01-30	3.66	3.92	—	3.7	0.013	1.83	9.0	0.10	13.96	0.01	2.509	0.27	1.12	9.2	90.0	0.8	-1.91	0.69	0.65	1.95	3.7	0.003	0.66	0.0	0.04	14.72	0.00	2.095	10.58	0.03	5.9	94.0	0.1	-0.72	0.66	0.78	0.77	1.44	26291	3378	5	0	0	0	0	logfile
✔	8FNE	29310	2023-11-21	2022-12-27	3.9	4.66	—	4.1	0.018	1.78	0.0	0.10	11.33	0.01	2.452	0.27	0.00	1.0	99.0	0.0	0.31	0.56	0.44	0.56	4.1	0.003	0.66	0.0	0.04	16.08	0.00	2.013	16.03	0.50	4.3	95.7	0.0	-0.12	1.83	0.66	0.72	0.71	33508	2148	8	0	0	0	16644	logfile
✔	7TP0	26043	2023-11-18	2022-01-24	3.57	3.99	—	3.6	0.014	1.76	4.0	0.10	13.64	0.01	2.527	0.27	1.62	6.6	92.6	0.8	-1.08	0.85	0.85	2.66	3.6	0.006	0.69	0.0	0.04	14.26	0.00	1.983	7.50	0.15	5.7	94.1	0.2	-0.07	1.19	0.86	0.86	2.17	24589	3040	20	0	61	0	0	logfile
✔	6SKL	10227	2023-11-16	2019-08-16	3.7	3.87	—	3.7	0.013	1.93	50.0	0.11	15.18	0.02	1.901	0.27	0.09	3.3	96.7	0.0	-1.69	0.71	0.72	1.97	3.7	0.004	0.63	0.0	0.04	16.54	0.00	1.787	8.63	0.19	4.0	96.0	0.0	0.38	3.48	0.74	0.78	1.67	118181	7251	24	59	11	0	58997	logfile
✔	8Q9M	18286	2023-11-14	2023-08-20	2.65	2.53	2.47	2.7	0.011	1.76	0.0	0.09	11.56	0.01	2.640	0.28	0.00	1.8	98.2	0.0	-1.02	0.33	0.79	6.36	2.6	0.003	0.52	0.0	0.05	17.65	0.00	2.386	1.28	0.51	0.9	99.1	0.0	-1.58	1.45	0.41	0.90	6.12	7032	450	6	0	0	0	3588	logfile
✔	7QL4	14063	2023-11-14	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.61	0.0	0.05	14.84	0.00	2.063	8.06	0.25	2.3	97.7	0.0	-1.63	2.14	0.30	0.72	3.63	7074	456	6	0	0	0	3606	logfile
✔	6MB3	9065	2023-11-16	2018-08-29	3.37	3.47	—	3.4	0.020	1.75	0.0	0.09	9.45	0.01	2.273	0.28	0.00	3.7	96.1	0.1	0.34	0.73	0.86	4.52	3.4	0.003	0.66	0.0	0.04	14.01	0.00	2.193	7.66	0.23	5.5	94.4	0.0	0.04	1.27	0.74	0.88	3.63	16423	2178	19	0	0	0	0	logfile
✔	6WJ5	21688	2023-11-22	2020-04-11	3.6	3.81	—	3.8	0.012	1.84	4.0	0.10	13.33	0.01	2.369	0.28	0.05	3.8	95.7	0.5	-2.50	0.51	0.70	3.53	3.8	0.004	0.60	0.0	0.04	16.24	0.00	2.011	6.97	0.26	3.5	96.5	0.0	0.84	1.46	0.59	0.78	2.62	36320	2248	8	0	4	0	18268	logfile
✔	8DMB	27533	2023-11-16	2022-07-08	3.1	3.10	3.12	3.1	0.005	0.91	0.0	0.05	15.85	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.56	0.0	0.03	16.37	0.01	1.919	3.44	0.00	2.5	97.5	0.0	0.46	0.54	0.70	0.83	4.36	14225	328	5	275	2	0	5728	logfile
✔	7QKU	14053	2023-11-13	2021-12-19	2.57	2.42	2.48	2.7	0.011	1.83	5.0	0.10	11.69	0.01	2.516	0.28	0.00	5.2	94.8	0.0	-1.72	0.47	0.88	5.27	2.7	0.004	0.69	0.0	0.05	18.25	0.00	2.344	4.40	1.77	3.9	96.1	0.0	-2.11	1.39	0.47	0.92	5.70	3456	453	6	0	0	0	0	logfile
✔	7LYP	23598	2023-11-18	2021-03-07	4.05	4.38	—	4.1	0.013	1.73	0.0	0.09	13.10	0.01	2.509	0.28	0.71	6.7	92.7	0.6	-1.22	0.82	0.81	—	4.1	0.002	0.61	0.0	0.04	12.67	0.00	2.106	8.20	0.00	4.4	95.6	0.0	0.32	1.27	0.82	0.81	—	23504	2985	6	0	28	0	0	logfile
✔	7KDG	22821	2023-11-18	2020-10-08	3.01	3.39	—	3.3	0.014	1.76	3.0	0.10	12.77	0.01	2.515	0.28	0.31	6.2	93.5	0.3	-0.92	0.77	0.78	3.64	3.3	0.004	0.63	0.0	0.04	14.50	0.00	2.111	5.92	0.12	3.8	96.2	0.0	0.23	1.23	0.77	0.83	2.77	23700	2916	21	0	63	0	0	logfile
✔	8Q9o	18287	2023-11-14	2023-08-20	3.1	3.14	2.95	3.1	0.012	1.87	0.0	0.09	11.25	0.01	2.518	0.28	3.03	3.0	97.0	0.0	-1.40	0.32	0.80	5.39	3.1	0.003	0.59	0.0	0.05	13.90	0.00	2.051	4.41	0.25	2.7	97.3	0.0	-1.16	3.55	0.32	0.81	5.30	7032	450	6	0	0	0	3588	logfile
✔	8PPo	17806	2023-11-13	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.53	0.0	0.06	13.89	0.00	2.300	0.00	1.04	0.0	100.0	0.0	1.18	0.38	0.50	0.88	5.61	1696	240	16	0	0	0	0	logfile
✔	7QL1	14060	2023-11-13	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.007	0.85	0.0	0.05	15.42	0.00	2.104	12.32	0.00	4.2	95.8	0.0	-2.34	1.74	0.39	0.81	4.21	1671	219	3	0	0	0	0	logfile
✔	6WPS	21864	2023-11-19	2020-04-27	3.1	3.36	3.25	3.3	0.013	1.34	0.0	0.09	10.40	0.01	2.364	0.29	0.10	2.4	97.6	0.0	0.67	0.73	0.74	3.01	3.3	0.003	0.63	0.0	0.04	14.78	0.00	2.061	7.88	0.14	2.9	97.1	0.0	-0.01	1.66	0.78	0.82	2.91	28116	3540	27	0	75	0	0	logfile
✔	7Z8L	14556	2023-11-16	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	6.41	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.005	0.71	0.0	0.04	7.01	0.00	1.822	7.86	0.00	6.5	93.5	0.0	0.20	0.73	0.84	0.81	—	16513	3311	3	0	5	0	0	logfile
✔	7QJX	14025	2023-11-16	2021-12-17	2.99	3.05	3.00	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.004	1.21	0.0	0.31	16.31	0.01	2.139	3.54	1.41	6.7	93.3	0.0	-3.59	3.49	0.36	0.78	3.32	13860	900	12	0	0	0	7056	logfile

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