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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8G3M | 29704 | 2024-03-17 | 2023-02-08 | 3.0 | 3.57 | 3.06 | 3.3 | 0.016 | 1.79 | 0.0 | 0.09 | 16.80 | 0.01 | 2.313 | 0.14 | 0.21 | 4.6 | 95.2 | 0.2 | -0.86 | 0.82 | 0.86 | 3.65 | 3.3 | 0.003 | 0.74 | 0.0 | 0.05 | 13.81 | 0.00 | 2.144 | 5.87 | 1.80 | 4.1 | 95.7 | 0.2 | -0.60 | 1.28 | 0.79 | 0.81 | 2.98 | 18667 | 2272 | 38 | 0 | 97 | 0 | 0 | logfile |
✔ | 6X2A | 21999 | 2024-03-18 | 2020-05-20 | 3.3 | 3.94 | 3.39 | 3.8 | 0.012 | 1.76 | 4.0 | 0.09 | 12.51 | 0.01 | 2.552 | 0.14 | 1.64 | 6.3 | 93.3 | 0.4 | -1.32 | 0.81 | 0.82 | 3.41 | 3.8 | 0.002 | 0.57 | 0.0 | 0.04 | 13.31 | 0.00 | 2.245 | 6.19 | 1.59 | 3.4 | 96.6 | 0.0 | 0.45 | 2.19 | 0.78 | 0.79 | 2.74 | 21562 | 2875 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ToX | 26040 | 2024-03-19 | 2022-01-24 | 3.62 | 4.01 | — | 3.6 | 0.014 | 1.76 | 1.0 | 0.10 | 13.09 | 0.01 | 2.515 | 0.14 | 1.35 | 6.7 | 92.8 | 0.5 | -1.12 | 0.85 | 0.84 | 2.42 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.61 | 0.00 | 2.182 | 6.38 | 1.35 | 4.2 | 95.7 | 0.1 | 0.23 | 0.49 | 0.85 | 0.85 | 2.07 | 24618 | 3041 | 20 | 0 | 61 | 0 | 0 | logfile |
✔ | 7KE4 | 22831 | 2024-03-19 | 2020-10-10 | 3.21 | 3.83 | — | 3.6 | 0.014 | 1.78 | 8.0 | 0.10 | 13.37 | 0.01 | 2.519 | 0.15 | 1.06 | 6.7 | 92.9 | 0.4 | -1.54 | 0.77 | 0.73 | 2.97 | 3.6 | 0.005 | 0.68 | 0.0 | 0.04 | 13.92 | 0.00 | 2.122 | 8.77 | 1.88 | 5.0 | 95.0 | 0.0 | -0.24 | 1.29 | 0.81 | 0.81 | 2.23 | 23684 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 7LD1 | 23279 | 2024-03-21 | 2021-01-12 | 3.4 | 4.18 | — | 3.7 | 0.013 | 1.93 | 8.0 | 0.10 | 15.99 | 0.01 | 2.514 | 0.15 | 2.35 | 9.2 | 89.2 | 1.6 | -2.22 | 0.84 | 0.79 | 2.71 | 3.7 | 0.005 | 0.83 | 1.0 | 0.05 | 13.34 | 0.00 | 1.945 | 8.33 | 1.64 | 7.5 | 92.4 | 0.1 | -1.24 | 0.53 | 0.85 | 0.83 | 2.27 | 29444 | 4249 | 27 | 0 | 67 | 0 | 0 | logfile |
✔ | 7M0J | 23612 | 2024-03-19 | 2021-03-11 | 3.52 | 3.78 | — | 3.7 | 0.013 | 1.87 | 1.0 | 0.10 | 13.97 | 0.01 | 2.528 | 0.15 | 1.68 | 7.4 | 92.2 | 0.5 | -2.03 | 0.77 | 0.78 | 2.38 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 15.17 | 0.00 | 2.132 | 8.46 | 2.15 | 4.0 | 96.0 | 0.0 | -0.01 | 1.31 | 0.78 | 0.80 | 2.21 | 22827 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LWN | 23551 | 2024-03-19 | 2021-03-01 | 2.94 | 3.14 | — | 3.1 | 0.013 | 1.77 | 4.0 | 0.09 | 12.61 | 0.01 | 2.516 | 0.15 | 0.87 | 4.6 | 95.1 | 0.3 | -0.76 | 0.74 | 0.83 | 3.80 | 3.1 | 0.006 | 0.68 | 0.0 | 0.05 | 14.79 | 0.00 | 2.147 | 5.77 | 1.73 | 3.2 | 96.8 | 0.0 | 0.07 | 0.60 | 0.76 | 0.83 | 3.13 | 23570 | 2980 | 11 | 0 | 37 | 0 | 0 | logfile |
✔ | 7THE | 25893 | 2024-03-10 | 2022-01-10 | 3.87 | 4.06 | 3.94 | 4.0 | 0.013 | 1.88 | 0.0 | 0.11 | 13.76 | 0.02 | 2.548 | 0.15 | 0.00 | 8.2 | 91.8 | 0.0 | -2.01 | 0.67 | 0.75 | 3.24 | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 16.19 | 0.00 | 2.165 | 15.28 | 6.09 | 6.7 | 93.3 | 0.0 | -1.22 | 0.69 | 0.68 | 0.76 | 2.74 | 3305 | 423 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7QWM | 14189 | 2024-03-10 | 2022-01-25 | 2.76 | 2.21 | 2.47 | 2.2 | 0.012 | 1.93 | 3.0 | 0.11 | 13.26 | 0.01 | 2.502 | 0.15 | 0.00 | 8.0 | 92.0 | 0.0 | -2.89 | 0.34 | 0.80 | 6.86 | 2.2 | 0.004 | 0.68 | 0.0 | 0.05 | 17.24 | 0.00 | 2.109 | 9.54 | 0.79 | 6.3 | 93.7 | 0.0 | -2.85 | 0.51 | 0.37 | 0.82 | 6.28 | 3255 | 405 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QK2 | 14029 | 2024-03-10 | 2021-12-17 | 2.61 | 2.61 | 2.37 | 2.7 | 0.011 | 1.86 | 10.0 | 0.11 | 10.81 | 0.01 | 2.499 | 0.15 | 0.00 | 4.1 | 95.9 | 0.0 | -1.51 | 0.37 | 0.86 | 6.04 | 2.7 | 0.004 | 0.67 | 0.0 | 0.05 | 16.79 | 0.00 | 2.157 | 5.14 | 2.96 | 2.9 | 97.1 | 0.0 | -1.87 | 1.29 | 0.37 | 0.88 | 5.61 | 3246 | 426 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KDi | 22823 | 2024-03-19 | 2020-10-08 | 3.26 | 3.83 | — | 3.7 | 0.014 | 1.70 | 2.0 | 0.10 | 12.19 | 0.01 | 2.522 | 0.15 | 0.27 | 6.1 | 93.8 | 0.1 | -0.76 | 0.79 | 0.78 | 3.13 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 13.50 | 0.00 | 2.175 | 5.88 | 1.06 | 4.1 | 95.9 | 0.0 | 0.20 | 0.65 | 0.79 | 0.80 | 2.65 | 23688 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 8FD5 | 29002 | 2024-03-10 | 2022-12-02 | 4.57 | 4.19 | — | 10.0 | 0.016 | 2.15 | 4.0 | 0.13 | 13.14 | 0.02 | 2.541 | 0.16 | 0.29 | 3.8 | 96.2 | 0.0 | -1.38 | 0.28 | 0.02 | — | 3.6 | 0.002 | 0.67 | 0.0 | 0.04 | 13.21 | 0.01 | 2.134 | 9.88 | 0.00 | 6.0 | 94.0 | 0.0 | -1.15 | 1.23 | 0.39 | 0.12 | — | 3214 | 419 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N5F | 24188 | 2024-03-10 | 2021-06-05 | 2.7 | 2.27 | 2.74 | 2.0 | 0.023 | 1.50 | 0.0 | 0.10 | 9.99 | 0.01 | 2.468 | 0.16 | 0.00 | 1.3 | 98.7 | 0.0 | 1.68 | 0.36 | 0.75 | 3.32 | 1.7 | 0.003 | 0.56 | 0.0 | 0.04 | 17.37 | 0.00 | 2.328 | 6.75 | 2.22 | 1.1 | 98.9 | 0.0 | 2.55 | 0.79 | 0.35 | 0.77 | 3.00 | 3037 | 386 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7TPH | 26055 | 2024-03-18 | 2022-01-25 | 3.58 | 4.03 | — | 3.6 | 0.013 | 1.76 | 5.0 | 0.10 | 12.02 | 0.01 | 2.501 | 0.16 | 1.01 | 7.2 | 92.3 | 0.6 | -1.01 | 0.84 | 0.85 | 3.36 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 12.26 | 0.00 | 2.198 | 4.41 | 0.46 | 4.8 | 95.1 | 0.1 | 0.36 | 1.93 | 0.84 | 0.86 | 2.43 | 22180 | 2912 | 14 | 0 | 52 | 0 | 0 | logfile |
✔ | 7KE6 | 22832 | 2024-03-19 | 2020-10-10 | 3.1 | 3.68 | — | 3.6 | 0.014 | 1.76 | 4.0 | 0.10 | 13.18 | 0.01 | 2.558 | 0.17 | 1.02 | 6.5 | 93.2 | 0.3 | -1.42 | 0.78 | 0.77 | 3.34 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 13.94 | 0.00 | 2.159 | 6.18 | 1.41 | 3.8 | 96.2 | 0.0 | 0.25 | 1.26 | 0.74 | 0.77 | 2.61 | 23688 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 7LYL | 23594 | 2024-03-19 | 2021-03-07 | 3.72 | 4.02 | — | 3.8 | 0.013 | 1.70 | 2.0 | 0.09 | 13.01 | 0.01 | 2.538 | 0.17 | 0.69 | 5.7 | 94.2 | 0.1 | -1.00 | 0.81 | 0.83 | 2.52 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 14.13 | 0.00 | 2.166 | 6.50 | 1.38 | 3.7 | 96.3 | 0.0 | 0.48 | 0.59 | 0.82 | 0.84 | 2.00 | 23826 | 3003 | 6 | 0 | 28 | 0 | 0 | logfile |
✔ | 8UXX | 42788 | 2024-03-17 | 2023-11-11 | 3.2 | 3.48 | 3.27 | 3.5 | 0.012 | 1.91 | 8.0 | 0.10 | 15.07 | 0.02 | 1.821 | 0.17 | 2.29 | 4.4 | 95.5 | 0.1 | -2.07 | 0.64 | 0.74 | 3.38 | 3.5 | 0.004 | 0.70 | 1.0 | 0.04 | 15.81 | 0.00 | 0.884 | 6.44 | 1.67 | 3.4 | 96.6 | 0.0 | -0.42 | 2.06 | 0.72 | 0.84 | 2.59 | 77330 | 4916 | 26 | 0 | 27 | 5 | 38268 | logfile |
✔ | 7N5G | 24189 | 2024-03-10 | 2021-06-05 | 2.4 | 2.16 | 2.42 | 1.5 | 0.022 | 1.51 | 0.0 | 0.09 | 10.57 | 0.01 | 2.386 | 0.17 | 0.00 | 0.8 | 99.2 | 0.0 | 1.84 | 0.40 | 0.79 | 3.64 | 1.5 | 0.003 | 0.52 | 0.0 | 0.04 | 16.31 | 0.00 | 2.224 | 3.92 | 0.98 | 1.4 | 98.6 | 0.0 | 3.11 | 1.20 | 0.39 | 0.80 | 2.58 | 2926 | 371 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7NCJ | 12268 | 2024-03-15 | 2021-01-28 | 4.23 | 3.11 | 3.97 | 4.5 | 0.011 | 1.60 | 2.0 | 0.10 | 13.68 | 0.01 | 2.444 | 0.18 | 0.76 | 7.7 | 92.0 | 0.3 | -2.36 | 0.65 | 0.46 | — | 4.3 | 0.003 | 0.63 | 1.0 | 0.05 | 14.34 | 0.00 | 1.937 | 16.69 | 0.00 | 10.8 | 89.2 | 0.0 | -3.10 | 1.40 | 0.70 | 0.58 | — | 10860 | 774 | 12 | 0 | 0 | 0 | 5586 | logfile |
✔ | 7ToU | 26038 | 2024-03-19 | 2022-01-24 | 3.24 | 3.49 | — | 3.3 | 0.014 | 1.82 | 8.0 | 0.11 | 12.99 | 0.01 | 2.517 | 0.18 | 1.20 | 6.2 | 93.2 | 0.7 | -1.00 | 0.84 | 0.85 | 3.52 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 13.38 | 0.00 | 2.126 | 5.32 | 1.31 | 4.4 | 95.6 | 0.0 | 0.39 | 0.57 | 0.86 | 0.87 | 2.66 | 24687 | 3050 | 20 | 0 | 61 | 0 | 0 | logfile |