Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G6X	29787	2023-11-21	2023-02-16	2.31	1.96	2.20	2.0	0.011	0.99	0.0	0.06	15.24	0.03	1.474	7.58	5.85	4.1	95.8	0.2	-2.02	0.68	0.83	5.32	2.0	0.005	0.86	0.0	0.04	15.38	0.01	1.756	7.16	3.92	4.3	95.6	0.1	-0.57	0.26	0.69	0.85	5.06	93873	3177	72	3037	252	3462	0	logfile
✔	8A5i	15175	2023-11-20	2022-06-15	2.3	1.92	2.20	2.2	0.011	1.72	1.0	0.12	15.57	0.02	1.234	3.32	2.48	5.4	93.2	1.4	-2.45	0.49	0.73	5.52	2.1	0.006	0.89	0.0	0.05	15.81	0.01	1.544	7.91	2.32	4.4	95.4	0.2	-0.41	0.88	0.68	0.84	5.20	89799	2973	56	3022	172	1381	0	logfile
✔	5WP9	8874	2023-11-15	2017-08-03	4.22	4.31	2.20	5.2	0.011	1.24	0.0	0.05	10.03	0.02	1.918	2.30	0.63	5.5	93.1	1.4	-0.58	0.51	0.64	—	4.7	0.003	0.63	0.0	0.04	12.36	0.00	1.868	12.68	0.00	4.5	95.3	0.3	0.46	1.85	0.50	0.69	—	117048	7352	24	0	16	0	59080	logfile
✔	7TZF	26208	2023-11-15	2022-02-15	2.4	2.00	2.20	2.3	0.010	0.53	0.0	0.04	14.56	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.003	0.60	0.0	0.04	16.83	0.00	2.219	6.21	1.43	1.8	98.2	0.0	0.83	0.83	0.57	0.83	4.87	10342	1272	13	0	19	25	0	logfile
✔	8GVK	32099	2023-11-13	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.77	0.0	0.04	15.42	0.00	2.211	9.90	2.62	4.3	94.9	0.9	-0.94	0.88	0.74	0.85	6.36	3567	476	8	0	0	19	0	logfile
✔	7YBU	33729	2023-11-14	2022-06-29	2.2	2.92	2.20	2.4	0.008	1.10	7.0	0.08	12.55	0.01	2.192	10.83	0.41	2.0	98.0	0.0	0.51	0.84	0.82	3.72	2.5	0.005	0.62	0.0	0.05	14.58	0.00	2.174	6.25	0.89	2.7	97.3	0.0	0.61	1.24	0.86	0.88	3.85	54318	7062	18	0	6	0	0	logfile
✔	6WZG	21972	2023-11-14	2020-05-13	2.3	2.06	2.21	2.3	0.012	1.56	18.0	0.12	14.02	0.01	2.270	4.92	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.004	0.62	0.0	0.04	16.41	0.00	2.112	6.07	1.54	1.9	98.1	0.0	1.42	0.99	0.73	0.87	5.09	8939	1165	6	0	0	0	0	logfile
✔	8G3K	29700	2023-11-13	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.002	0.47	0.0	0.03	17.12	0.00	2.333	3.72	0.41	0.7	99.3	0.0	4.78	1.17	0.47	0.83	4.98	2244	285	2	0	0	0	0	logfile
✔	8P5U	17453	2023-11-13	2023-05-24	2.17	2.20	2.21	1.9	0.032	1.60	0.0	0.08	15.06	0.01	1.601	3.66	0.31	3.0	97.0	0.0	-1.97	0.91	0.92	5.23	1.9	0.004	0.58	0.0	0.04	17.05	0.00	1.953	4.75	0.78	2.4	97.6	0.0	0.91	0.40	0.89	0.89	4.37	52878	6714	12	0	24	0	0	logfile
✔	8DBF	27282	2023-11-20	2022-06-14	2.2	2.32	2.21	2.3	0.014	0.99	0.0	0.05	17.66	0.05	1.866	9.33	3.08	4.1	95.9	0.0	0.97	0.74	0.87	5.47	2.3	0.003	1.61	0.0	0.05	17.73	0.00	1.853	5.92	1.93	2.2	97.8	0.0	0.39	1.14	0.75	0.89	5.72	29964	3792	36	0	60	84	0	logfile
✔	8FUZ	29482	2023-11-18	2023-01-18	2.1	2.08	2.21	2.1	0.007	0.86	0.0	0.05	17.81	0.01	2.232	4.59	1.17	2.1	97.9	0.0	0.92	0.78	0.91	5.73	2.1	0.003	0.56	0.0	0.04	17.79	0.00	2.228	3.17	1.53	1.6	98.4	0.0	0.75	0.34	0.77	0.91	5.53	24008	3120	16	0	16	0	0	logfile
✔	8oi8	16888	2023-11-16	2023-03-22	2.28	2.38	2.21	2.3	0.004	0.58	0.0	0.04	12.07	0.00	1.798	3.42	0.65	1.4	98.6	0.0	-1.50	0.72	0.87	5.56	2.3	0.005	0.66	0.0	0.05	15.05	0.00	1.739	4.06	1.05	0.7	99.3	0.0	1.29	2.13	0.74	0.91	5.56	14895	1815	15	0	10	585	0	logfile
✘	8G3V	29710	2023-11-17	2023-02-08	2.2	2.84	2.21	2.7	0.014	1.61	4.0	0.09	13.68	0.01	2.257	0.54	0.00	3.9	95.8	0.3	-0.74	0.83	0.93	6.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20045	2500	28	0	61	0	0	logfile
✔	7VFD	31949	2023-11-15	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.62	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.003	0.52	0.0	0.05	15.49	0.00	2.222	3.42	0.40	1.8	98.2	0.0	0.35	1.13	0.80	0.89	5.60	13262	1623	6	0	0	350	0	logfile
✔	8oUZ	17206	2023-11-16	2023-04-25	2.2	2.43	2.22	2.4	0.003	0.56	0.0	0.04	15.86	0.00	1.833	4.42	1.00	3.4	96.6	0.0	1.04	0.75	0.79	4.38	2.4	0.003	0.56	0.0	0.04	16.21	0.00	1.752	5.24	2.00	3.8	96.2	0.0	0.75	0.47	0.73	0.79	4.31	14822	924	11	0	6	142	7373	logfile
✔	7ZZ1	15031	2023-11-13	2022-05-25	2.27	2.59	2.22	2.1	0.007	0.89	0.0	0.05	18.21	0.01	2.159	3.90	2.68	2.6	97.4	0.0	-1.05	0.91	0.90	4.22	2.1	0.003	0.60	0.0	0.04	17.94	0.00	2.116	8.71	2.87	2.6	97.4	0.0	1.09	1.10	0.91	0.90	4.07	4958	618	5	0	4	55	0	logfile
✔	7ZZ0	15030	2023-11-13	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.003	0.53	0.0	0.04	16.72	0.00	2.106	5.73	1.96	1.5	98.5	0.0	1.21	0.19	0.92	0.91	4.56	4387	541	1	0	2	84	0	logfile
✔	7XY9	33514	2023-11-15	2022-06-01	2.12	2.29	2.22	2.3	0.002	0.54	0.0	0.05	17.43	0.00	1.988	4.59	1.67	4.0	96.0	0.0	0.43	0.78	0.88	5.01	2.3	0.004	0.67	0.0	0.05	17.41	0.01	1.873	5.07	1.95	4.2	95.8	0.0	-0.09	0.16	0.75	0.87	5.58	10962	1376	12	0	12	574	0	logfile
✔	7YNo	33967	2023-11-13	2022-07-31	2.8	2.92	2.23	3.1	0.008	0.79	0.0	0.05	12.19	0.00	2.252	22.12	0.00	7.3	92.7	0.0	-3.47	0.41	0.77	5.69	3.1	0.004	0.65	0.0	0.05	14.59	0.00	2.237	7.82	1.94	3.1	96.9	0.0	-1.96	0.93	0.42	0.79	4.90	2562	366	8	0	2	0	0	logfile
✔	7PK6	13466	2023-11-16	2021-08-25	2.15	2.27	2.23	2.3	0.005	0.60	0.0	0.05	17.06	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.003	0.55	0.0	0.04	17.46	0.00	2.152	6.42	2.12	2.2	97.8	0.0	1.53	0.87	0.78	0.88	4.85	120580	15100	20	0	0	0	0	logfile

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