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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8P5T | 17452 | 2024-03-26 | 2023-05-24 | 2.17 | 2.19 | 2.21 | 1.9 | 0.011 | 1.21 | 0.0 | 0.08 | 13.92 | 0.01 | 2.125 | 1.04 | 0.42 | 3.2 | 96.8 | 0.0 | -2.13 | 0.91 | 0.92 | 5.21 | 1.9 | 0.003 | 0.54 | 0.0 | 0.04 | 16.51 | 0.00 | 1.948 | 2.16 | 0.63 | 2.1 | 97.9 | 0.0 | 1.07 | 0.41 | 0.89 | 0.88 | 4.40 | 52590 | 6714 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 8HKM | 34855 | 2024-03-21 | 2022-11-27 | 2.95 | 2.42 | 3.07 | 1.9 | 0.003 | 0.71 | 3.0 | 0.05 | 16.01 | 0.01 | 1.484 | 10.49 | 1.30 | 2.6 | 97.3 | 0.1 | -0.56 | 0.80 | 0.84 | 3.13 | 1.8 | 0.004 | 0.63 | 0.0 | 0.04 | 16.41 | 0.00 | 2.179 | 9.19 | 2.18 | 2.8 | 97.1 | 0.1 | 0.67 | 1.15 | 0.80 | 0.83 | 2.86 | 28855 | 3596 | 8 | 0 | 19 | 0 | 0 | logfile |
✔ | 7T9i | 25758 | 2024-03-19 | 2021-12-19 | 2.9 | 2.43 | — | 1.9 | 0.005 | 0.91 | 1.0 | 0.05 | 12.78 | 0.01 | 2.016 | 3.30 | 0.62 | 3.6 | 96.4 | 0.0 | -0.16 | 0.69 | 0.63 | 2.32 | 1.8 | 0.003 | 0.65 | 0.0 | 0.04 | 15.01 | 0.00 | 1.913 | 9.43 | 2.34 | 6.2 | 93.8 | 0.0 | -0.24 | 1.12 | 0.74 | 0.72 | 2.61 | 23529 | 1532 | 11 | 0 | 8 | 0 | 11557 | logfile |
✔ | 8oRM | 17129 | 2024-03-10 | 2023-04-14 | 1.9 | 1.83 | 1.88 | 1.9 | 0.004 | 0.58 | 0.0 | 0.04 | 16.75 | 0.00 | 2.236 | 3.99 | 0.90 | 1.6 | 98.2 | 0.2 | 1.88 | 0.70 | 0.81 | 5.96 | 1.9 | 0.006 | 0.74 | 0.0 | 0.05 | 16.77 | 0.01 | 2.162 | 6.33 | 1.44 | 1.1 | 98.7 | 0.2 | 1.06 | 0.19 | 0.71 | 0.83 | 5.85 | 5341 | 632 | 7 | 0 | 2 | 210 | 0 | logfile |
✔ | 7KoD | 22972 | 2024-03-14 | 2020-11-08 | 1.655 | 2.30 | — | 1.9 | 0.001 | 0.33 | 0.0 | 0.03 | 8.49 | 0.00 | 2.288 | 0.80 | 0.00 | 1.1 | 98.9 | 0.0 | 6.14 | 0.91 | 0.91 | 8.16 | 2.0 | 0.005 | 0.50 | 0.0 | 0.04 | 13.83 | 0.00 | 1.855 | 2.71 | 0.25 | 0.6 | 99.4 | 0.0 | 5.20 | 0.58 | 0.87 | 0.93 | 8.06 | 68186 | 4128 | 48 | 0 | 0 | 1727 | 32643 | logfile |
✔ | 8Q9F | 18279 | 2024-03-11 | 2023-08-20 | 1.91 | 1.89 | 1.88 | 1.9 | 0.011 | 1.78 | 0.0 | 0.09 | 10.30 | 0.01 | 2.515 | 0.00 | 0.00 | 0.2 | 99.8 | 0.0 | -2.15 | 0.31 | 0.73 | 7.64 | 1.9 | 0.003 | 0.62 | 0.0 | 0.05 | 14.82 | 0.00 | 2.068 | 3.45 | 0.56 | 2.2 | 97.8 | 0.0 | -2.05 | 1.20 | 0.43 | 0.86 | 7.13 | 6390 | 414 | 6 | 0 | 0 | 0 | 3258 | logfile |
✔ | 8P6Y | 17511 | 2024-03-10 | 2023-05-30 | 1.9 | 1.73 | 1.95 | 1.9 | 0.005 | 0.60 | 0.0 | 0.04 | 17.03 | 0.00 | 2.148 | 3.62 | 0.36 | 1.0 | 98.9 | 0.2 | 1.99 | 0.68 | 0.84 | 6.33 | 1.9 | 0.003 | 0.61 | 0.0 | 0.04 | 17.11 | 0.00 | 2.142 | 5.09 | 0.90 | 1.1 | 98.7 | 0.2 | 1.66 | 0.74 | 0.68 | 0.85 | 6.31 | 5266 | 630 | 7 | 0 | 3 | 158 | 0 | logfile |
✔ | 6TAX | 10429 | 2024-03-23 | 2019-10-31 | 3.2 | 2.63 | — | 1.9 | 0.009 | 1.13 | 0.0 | 0.06 | 11.28 | 0.01 | 2.065 | 5.46 | 0.46 | 9.5 | 90.3 | 0.2 | -4.10 | 0.88 | 0.80 | 3.18 | 1.9 | 0.003 | 0.65 | 0.0 | 0.04 | 13.83 | 0.00 | 1.998 | 9.73 | 1.44 | 7.8 | 92.2 | 0.0 | -0.04 | 1.60 | 0.88 | 0.81 | 2.06 | 35235 | 4349 | 1 | 0 | 71 | 0 | 0 | logfile |
✔ | 7UA1 | 26412 | 2024-03-18 | 2022-03-11 | 2.99 | 3.02 | — | 1.9 | 0.003 | 0.62 | 0.0 | 0.04 | 14.48 | 0.00 | 1.785 | 8.77 | 0.29 | 3.3 | 96.6 | 0.1 | 1.20 | 0.85 | 0.80 | 2.97 | 1.9 | 0.005 | 0.69 | 0.0 | 0.04 | 15.39 | 0.00 | 2.111 | 8.92 | 0.44 | 4.2 | 95.7 | 0.1 | 1.08 | 0.43 | 0.87 | 0.85 | 3.39 | 138680 | 17324 | 12 | 0 | 16 | 0 | 0 | logfile |
✔ | 7UWL | 26835 | 2024-03-14 | 2022-05-03 | 3.7 | 2.40 | 3.59 | 1.9 | 0.005 | 0.78 | 1.0 | 0.05 | 16.74 | 0.00 | 2.137 | 15.51 | 0.63 | 7.1 | 92.9 | 0.0 | -1.39 | 0.68 | 0.64 | 1.65 | 1.7 | 0.003 | 0.78 | 0.0 | 0.05 | 16.71 | 0.00 | 2.099 | 14.75 | 5.05 | 7.1 | 92.9 | 0.0 | -1.54 | 0.41 | 0.68 | 0.65 | 1.61 | 10100 | 1236 | 16 | 0 | 22 | 0 | 0 | logfile |
✔ | 8BK9 | 16093 | 2024-03-22 | 2022-11-08 | 2.1 | 1.91 | 2.07 | 1.9 | 0.003 | 0.61 | 0.0 | 0.04 | 17.00 | 0.00 | 2.222 | 1.87 | 0.49 | 1.2 | 98.8 | 0.0 | 4.72 | 0.69 | 0.87 | 6.31 | 1.9 | 0.005 | 0.68 | 0.0 | 0.04 | 17.12 | 0.00 | 2.246 | 2.77 | 0.38 | 1.8 | 98.2 | 0.0 | 4.48 | 0.18 | 0.69 | 0.88 | 6.63 | 34978 | 4128 | 54 | 0 | 6 | 1156 | 0 | logfile |
✔ | 7TDF | 25827 | 2024-03-20 | 2021-12-31 | 2.7 | 2.10 | 2.66 | 1.9 | 0.006 | 0.74 | 0.0 | 0.05 | 12.56 | 0.01 | 2.148 | 2.71 | 0.19 | 3.5 | 96.5 | 0.0 | 0.06 | 0.74 | 0.77 | 4.39 | 1.9 | 0.004 | 0.59 | 0.0 | 0.04 | 15.39 | 0.00 | 2.099 | 5.88 | 1.04 | 2.2 | 97.8 | 0.0 | 2.24 | 1.13 | 0.76 | 0.81 | 3.75 | 19566 | 1188 | 2 | 0 | 0 | 0 | 9792 | logfile |
✔ | 7E9H | 31032 | 2024-03-17 | 2021-03-04 | 4.0 | 2.62 | — | 1.9 | 0.003 | 0.48 | 0.0 | 0.04 | 11.36 | 0.00 | 2.202 | 8.04 | 0.06 | 2.9 | 97.1 | 0.0 | -2.83 | 0.68 | 0.61 | — | 1.9 | 0.006 | 0.77 | 0.0 | 0.04 | 15.13 | 0.00 | 2.034 | 18.48 | 4.22 | 6.2 | 93.8 | 0.0 | -1.09 | 2.02 | 0.71 | 0.68 | — | 16847 | 2309 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U9Q | 26405 | 2024-03-18 | 2022-03-11 | 3.11 | 3.51 | — | 1.9 | 0.003 | 0.85 | 0.0 | 0.04 | 14.30 | 0.01 | 2.065 | 12.40 | 0.66 | 3.4 | 96.5 | 0.1 | -1.28 | 0.86 | 0.79 | 2.19 | 1.9 | 0.003 | 0.68 | 0.0 | 0.04 | 14.83 | 0.00 | 2.124 | 11.34 | 0.53 | 3.5 | 96.4 | 0.1 | 0.84 | 0.46 | 0.88 | 0.86 | 2.50 | 138608 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 8F2B | 28812 | 2024-03-15 | 2022-11-07 | 2.0 | 1.79 | 2.02 | 1.9 | 0.004 | 0.55 | 0.0 | 0.04 | 14.23 | 0.00 | 2.278 | 5.13 | 1.32 | 1.0 | 99.0 | 0.0 | -2.02 | 0.54 | 0.74 | 4.60 | 1.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.03 | 0.00 | 2.172 | 6.20 | 1.98 | 2.6 | 97.4 | 0.0 | 1.21 | 0.96 | 0.55 | 0.75 | 5.08 | 10360 | 1273 | 12 | 0 | 16 | 31 | 0 | logfile |
✔ | 8F0K | 28759 | 2024-03-15 | 2022-11-03 | 1.9 | 1.70 | 1.92 | 1.9 | 0.004 | 0.59 | 0.0 | 0.04 | 14.28 | 0.01 | 2.252 | 4.34 | 0.91 | 1.2 | 98.8 | 0.0 | -1.70 | 0.50 | 0.67 | 4.75 | 1.9 | 0.003 | 0.59 | 0.0 | 0.04 | 16.18 | 0.00 | 2.197 | 5.48 | 1.55 | 1.9 | 98.1 | 0.0 | 1.66 | 0.58 | 0.57 | 0.73 | 5.02 | 10553 | 1272 | 12 | 0 | 18 | 39 | 0 | logfile |
✔ | 7WP9 | 32679 | 2024-03-19 | 2022-01-23 | 2.56 | 2.20 | — | 1.9 | 0.004 | 0.78 | 1.0 | 0.05 | 14.32 | 0.01 | 2.294 | 4.05 | 0.40 | 4.9 | 95.0 | 0.1 | -4.01 | 0.71 | 0.72 | 2.33 | 2.0 | 0.005 | 0.64 | 0.0 | 0.05 | 16.07 | 0.00 | 2.071 | 8.81 | 2.50 | 5.3 | 94.7 | 0.0 | -1.50 | 1.00 | 0.76 | 0.81 | 2.54 | 25077 | 3141 | 13 | 0 | 28 | 0 | 0 | logfile |
✔ | 7WiC | 32528 | 2024-03-14 | 2022-01-03 | 2.8 | 2.21 | — | 1.9 | 0.005 | 0.62 | 0.0 | 0.05 | 12.93 | 0.00 | 2.176 | 7.87 | 0.00 | 2.7 | 97.3 | 0.0 | 0.61 | 0.76 | 0.76 | 3.53 | 1.9 | 0.003 | 0.58 | 0.0 | 0.04 | 15.76 | 0.00 | 2.171 | 7.98 | 3.22 | 3.5 | 96.5 | 0.0 | 1.07 | 0.37 | 0.78 | 0.80 | 3.23 | 9048 | 1158 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZGL | 11210 | 2024-03-16 | 2020-06-19 | 1.9 | 1.87 | — | 1.9 | 0.013 | 1.55 | 0.0 | 0.12 | 15.52 | 0.01 | 2.196 | 9.00 | 3.73 | 1.1 | 98.9 | 0.0 | 0.13 | 0.73 | 0.83 | 7.03 | 1.9 | 0.003 | 0.56 | 0.0 | 0.04 | 15.72 | 0.00 | 2.115 | 4.79 | 1.24 | 0.9 | 99.1 | 0.0 | 3.47 | 0.72 | 0.75 | 0.83 | 7.06 | 15760 | 1848 | 24 | 0 | 0 | 964 | 0 | logfile |
✔ | 7EFC | 31083 | 2024-03-10 | 2021-03-21 | 1.7 | 1.76 | 1.76 | 1.9 | 0.032 | 3.16 | 16.0 | 0.09 | 14.88 | 0.02 | 0.001 | 2.15 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.75 | 0.84 | 6.42 | 1.9 | 0.006 | 0.87 | 0.0 | 0.05 | 14.55 | 0.01 | 1.768 | 10.33 | 0.54 | 3.8 | 96.2 | 0.0 | 0.14 | 0.88 | 0.80 | 0.85 | 6.64 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |