Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ETV	28600	2023-11-14	2022-10-17	3.16	3.01	3.36	2.0	0.006	0.87	0.0	0.05	28.33	0.01	2.305	2.83	0.00	2.3	97.7	0.0	-0.99	0.80	0.77	1.76	2.0	0.005	0.68	0.0	0.04	29.10	0.00	2.092	14.26	0.69	2.7	97.3	0.0	1.79	0.46	0.81	0.80	1.48	8682	524	8	220	0	0	0	logfile
✔	7XSR	33432	2023-11-16	2022-05-15	2.97	2.20	2.91	2.0	0.007	0.97	0.0	0.07	17.32	0.01	2.268	3.17	3.94	5.7	94.2	0.1	-2.57	0.80	0.79	2.87	1.9	0.003	0.63	0.0	0.04	18.42	0.00	2.152	6.42	3.25	5.7	94.3	0.1	0.12	0.56	0.80	0.82	2.89	16907	1963	5	49	4	0	0	logfile
✔	7Y48	33603	2023-11-14	2022-06-14	2.85	2.13	2.80	2.0	0.010	0.84	0.0	0.04	13.70	0.01	2.271	9.22	0.90	2.3	97.7	0.0	1.13	0.51	0.74	2.02	2.0	0.003	0.53	0.0	0.04	15.77	0.00	2.363	4.04	1.35	1.2	98.8	0.0	1.78	0.38	0.53	0.78	1.76	4324	567	1	0	2	0	0	logfile
✔	8DPH	27635	2023-11-14	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.59	0.0	0.05	11.05	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.61	0.0	0.04	15.53	0.00	2.202	5.07	0.61	2.9	97.1	0.0	1.15	1.05	0.78	0.77	2.17	8182	1093	6	0	3	0	0	logfile
✔	7WZ7	32905	2023-11-14	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	6.56	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.004	0.68	0.0	0.04	14.95	0.00	2.140	12.43	2.31	4.3	95.7	0.0	0.40	1.18	0.72	0.73	1.49	8676	1108	5	0	0	0	0	logfile
✔	8DMJ	27541	2023-11-15	2022-07-08	3.2	2.19	3.22	2.0	0.003	0.64	0.0	0.05	14.82	0.00	2.167	8.41	0.32	3.1	96.9	0.0	-0.37	0.75	0.76	3.13	2.1	0.003	0.62	0.0	0.05	15.76	0.00	2.146	9.36	0.24	2.8	97.2	0.0	-0.47	0.35	0.75	0.76	3.00	11030	1425	7	0	0	0	0	logfile
✔	7UQX	26701	2023-11-14	2022-04-20	3.3	2.35	3.18	2.0	0.003	0.52	0.0	0.04	10.17	0.00	1.752	9.27	0.19	3.3	96.7	0.0	0.26	0.74	0.71	2.97	1.9	0.003	0.65	0.0	0.04	14.02	0.00	2.107	13.58	0.39	3.9	96.1	0.0	-0.01	0.96	0.75	0.75	2.88	9491	1154	5	2	5	0	0	logfile
✔	8GUS	34278	2023-11-14	2022-09-13	2.97	2.31	3.10	2.0	0.009	0.88	0.0	0.15	14.94	0.01	2.207	11.61	0.00	3.6	96.4	0.0	0.44	0.77	0.78	2.54	2.1	0.003	0.68	0.0	0.04	15.83	0.00	2.148	9.78	1.90	3.1	96.9	0.0	0.51	0.37	0.76	0.78	2.56	8805	1135	6	0	1	0	0	logfile
✔	7VUG	32127	2023-11-14	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.57	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.004	0.64	0.0	0.04	15.83	0.00	1.991	13.01	0.20	5.5	94.5	0.0	-0.68	0.34	0.73	0.74	2.08	8924	1127	6	0	1	0	0	logfile
✔	8AG3	15414	2023-11-13	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	2.0	0.003	0.64	0.0	0.05	17.42	0.00	2.092	9.28	1.95	7.5	92.5	0.0	-1.11	0.33	0.63	0.77	2.96	2632	322	2	0	0	0	0	logfile
✔	8oM9	16971	2023-11-15	2023-03-31	3.32	2.45	3.31	2.0	0.008	1.29	3.0	0.09	18.80	0.00	2.025	25.29	2.76	6.3	93.7	0.0	-1.44	0.71	0.73	0.58	1.7	0.003	0.70	0.0	0.04	18.99	0.00	1.840	19.72	0.29	5.3	94.7	0.1	-0.78	0.50	0.67	0.66	0.54	13314	1548	6	44	4	0	0	logfile
✔	8ESV	28580	2023-11-14	2022-10-14	3.3	2.37	3.29	2.0	0.006	0.71	0.0	0.04	17.57	0.01	1.929	12.92	0.00	6.7	93.1	0.2	-0.67	0.76	0.76	2.53	2.0	0.005	0.71	0.0	0.05	17.76	0.00	1.937	15.12	0.13	8.0	91.8	0.2	-0.60	0.29	0.77	0.77	2.67	7222	933	8	0	13	0	0	logfile
✘	7V69	31739	2023-11-15	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8539	1122	5	0	0	0	0	logfile
✔	8DPF	27633	2023-11-14	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.77	0.0	0.07	11.15	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.002	0.61	0.0	0.04	14.81	0.00	2.165	3.90	1.10	2.7	97.3	0.0	0.87	1.02	0.80	0.80	2.96	8160	1093	6	0	2	0	0	logfile
✔	8D4X	27201	2023-11-19	2022-06-02	2.8	2.39	2.87	2.0	0.004	0.69	0.0	0.04	17.09	0.01	2.189	13.49	2.64	4.4	95.6	0.0	0.61	0.75	0.78	1.82	2.0	0.004	0.74	0.0	0.04	17.21	0.00	2.142	13.54	2.95	4.4	95.6	0.0	0.62	0.89	0.75	0.77	1.85	26409	3353	4	0	6	0	0	logfile
✔	8G1i	29671	2023-11-15	2023-02-02	3.12	2.20	3.26	2.0	0.003	0.64	0.0	0.04	19.78	0.01	1.975	7.71	1.72	6.5	93.5	0.0	-1.85	0.75	0.77	2.21	1.8	0.003	0.55	0.0	0.04	19.64	0.00	2.218	5.09	0.26	5.6	94.4	0.0	-0.67	0.89	0.75	0.79	2.33	13613	1298	4	142	0	0	0	logfile
✔	7EQ1	31254	2023-11-14	2021-04-28	3.3	2.26	—	2.0	0.003	0.58	0.0	0.04	13.83	0.00	2.113	10.24	0.00	6.5	93.5	0.0	-0.59	0.75	0.74	3.06	2.0	0.003	0.60	0.0	0.04	15.98	0.00	2.091	10.97	0.41	6.0	94.0	0.0	-0.11	0.31	0.75	0.77	2.68	8999	1150	5	0	0	0	0	logfile
✔	8DZS	27807	2023-11-14	2022-08-08	2.65	2.07	2.73	2.0	0.006	0.78	0.0	0.05	13.94	0.01	2.253	5.63	0.12	4.2	95.8	0.0	-1.00	0.77	0.75	3.73	1.9	0.004	0.62	0.0	0.04	16.31	0.00	2.105	9.41	1.53	4.2	95.8	0.0	-0.20	1.29	0.79	0.79	3.27	8245	1100	6	0	1	0	0	logfile
✔	7ZBW	14594	2023-11-16	2022-03-24	3.5	2.45	3.38	2.0	0.003	0.54	0.0	0.04	13.85	0.00	2.162	5.53	0.07	2.9	97.1	0.0	1.39	0.77	0.76	1.82	2.0	0.003	0.57	0.0	0.04	15.98	0.00	2.138	7.27	0.41	2.7	97.3	0.0	1.73	0.89	0.76	0.75	1.63	14784	2014	5	0	0	0	0	logfile
✔	7ZBZ	14597	2023-11-17	2022-03-24	3.1	2.28	2.98	2.0	0.003	0.52	0.0	0.04	13.60	0.00	1.989	4.41	0.00	1.7	98.3	0.0	1.68	0.80	0.80	2.31	2.0	0.004	0.57	0.0	0.04	15.86	0.00	1.992	5.08	0.11	2.0	98.0	0.0	1.94	1.71	0.81	0.83	1.87	18156	2394	6	0	3	0	0	logfile

• ← previous
• Page 8 of 528
• next →