Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5GJV	9513	2023-11-18	2016-07-02	3.6	3.69	—	3.7	0.013	1.62	32.0	0.08	14.85	0.01	1.695	18.01	4.57	11.6	86.4	2.0	-5.08	0.54	0.79	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21904	2661	14	0	43	0	0	logfile
✘	5GJW	9515	2023-11-18	2016-07-02	3.9	4.02	—	4.0	0.012	1.51	20.0	0.08	11.56	0.01	1.844	12.82	1.50	12.8	85.5	1.7	-5.28	0.55	0.80	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21561	2676	14	0	29	0	0	logfile
✘	5GL0	9520	2023-11-14	2016-07-07	4.2	4.40	—	4.2	0.018	1.72	17.0	0.10	11.34	0.01	1.957	21.25	0.51	6.5	90.6	2.9	-2.58	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	5GKZ	9519	2023-11-14	2016-07-07	4.0	4.10	—	4.0	0.019	1.71	36.0	0.11	11.29	0.01	1.755	15.04	0.51	6.5	91.2	2.3	-2.89	0.72	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	5GKY	9518	2023-11-14	2016-07-07	3.8	4.18	—	4.0	0.017	1.70	19.0	0.10	11.29	0.01	1.789	19.04	0.51	5.8	91.8	2.5	-2.71	0.73	0.79	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111036	15068	12	0	4	0	0	logfile
✘	5GM6	9524	2023-11-14	2016-07-12	3.5	3.61	—	3.6	0.012	1.33	11.0	0.08	13.79	0.01	1.303	18.95	3.36	6.6	92.1	1.2	-3.54	0.58	0.83	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112064	12796	55	361	881	0	0	logfile
✘	5Li0	4050	2023-11-21	2016-07-13	3.8	3.91	—	3.8	0.014	1.18	1.0	0.05	14.64	0.01	1.920	5.40	0.20	14.9	84.7	0.5	-5.64	0.75	0.79	1.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	140825	5396	58	4575	41	162	0	logfile
✔	5KUF	8289	2023-11-18	2016-07-13	3.8	3.80	—	3.7	0.009	1.02	0.0	0.05	8.87	0.01	2.021	29.22	0.08	15.5	84.4	0.1	-5.82	0.61	0.71	1.68	3.7	0.003	0.69	0.0	0.04	13.57	0.00	2.155	13.20	0.35	5.9	94.1	0.0	-1.38	1.57	0.61	0.71	1.29	23728	3000	8	0	4	0	0	logfile
✔	5Lii	4053	2023-11-13	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	5Li4	4052	2023-11-17	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.004	1.04	0.0	0.05	13.71	0.01	1.950	32.75	0.09	15.2	83.8	1.0	-3.85	4.19	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	5LiJ	4054	2023-11-13	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.17	0.0	0.04	10.44	0.00	2.149	15.78	0.00	35.3	64.7	0.0	-5.53	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✘	5GMK	9525	2023-11-18	2016-07-14	3.4	3.52	—	3.5	0.012	1.25	16.0	0.07	13.99	0.01	1.378	19.35	2.77	7.7	91.2	1.0	-3.71	0.47	0.53	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75273	8026	51	404	981	0	0	logfile
✔	5LJ3	4055	2023-11-15	2016-07-17	3.8	3.92	—	3.8	0.007	1.46	40.0	0.09	17.30	0.01	1.631	5.99	8.54	8.1	90.7	1.2	-1.69	0.70	0.81	1.37	3.8	0.003	0.72	0.0	0.04	17.06	0.00	2.050	14.82	0.42	4.8	95.1	0.2	0.33	0.87	0.69	0.78	1.35	63161	7305	45	458	142	0	0	logfile
✔	5LJo	4061	2023-11-19	2016-07-19	4.9	7.28	—	5.9	0.014	1.69	1.0	0.08	11.01	0.01	2.147	5.45	0.15	9.4	86.8	3.8	-2.52	0.69	0.58	—	5.9	0.003	0.70	0.0	0.04	12.76	0.00	1.923	18.84	0.00	12.3	87.3	0.4	-2.48	1.32	0.80	0.80	—	24947	1624	5	0	0	0	12255	logfile
✘	5LJV	4062	2023-11-16	2016-07-21	3.64	3.75	—	3.7	0.030	2.85	85.0	0.16	18.81	0.02	2.070	21.28	11.82	7.4	89.7	2.9	-4.53	0.71	0.84	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15000	1950	12	0	12	0	0	logfile
✔	5LKi	4068	2023-11-14	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.51	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.004	0.83	0.0	0.04	15.10	0.00	2.088	15.46	0.70	7.1	92.5	0.4	0.24	0.81	0.63	0.80	1.65	55415	7135	5	0	0	0	0	logfile
✔	5LL6	4071	2023-11-14	2016-07-26	3.9	4.01	—	3.9	0.012	1.50	6.0	0.11	19.04	0.01	0.924	4.96	2.53	10.6	85.7	3.7	-3.86	0.69	0.82	1.20	3.9	0.009	1.02	0.0	0.05	19.15	0.01	1.728	25.33	1.83	13.9	85.1	0.9	-2.96	0.90	0.70	0.81	1.06	55262	3429	20	1325	5	0	0	logfile
✔	5L08	8300	2023-11-16	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.4	0.006	1.28	0.0	0.06	15.37	0.01	1.912	43.78	0.00	8.2	91.8	0.0	-2.70	3.88	0.27	0.71	—	13617	1629	9	0	0	0	0	logfile
✔	5LMV	4083	2023-11-14	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.14	0.01	0.977	14.22	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.003	0.72	0.0	0.04	16.73	0.01	2.048	27.68	0.00	6.8	92.7	0.5	-1.55	2.19	0.77	0.75	—	59470	3124	30	1612	4	0	0	logfile
✔	5LMQ	4076	2023-11-14	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.84	0.02	1.387	19.43	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.003	0.72	0.0	0.03	16.43	0.01	1.903	23.92	0.05	7.4	92.2	0.5	-1.12	1.62	0.84	0.84	—	55841	2635	29	1612	66	0	0	logfile

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