Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VV0	32133	2023-11-13	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.09	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.002	0.59	0.0	0.04	15.22	0.00	2.238	6.31	0.84	3.0	97.0	0.0	2.30	1.26	0.64	0.80	1.65	2175	268	2	0	1	0	0	logfile
✔	6M49	30074	2023-11-13	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.32	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.83	0.0	0.04	16.10	0.00	2.207	9.92	0.66	2.7	97.3	0.0	1.88	3.60	0.48	0.74	1.01	3098	420	3	0	1	0	0	logfile
✔	7LX5	23566	2023-11-13	2021-03-03	3.44	3.85	3.41	3.9	0.005	0.62	0.0	0.04	10.10	0.00	2.198	4.72	0.00	3.4	96.6	0.0	-0.46	0.71	0.81	3.26	3.9	0.003	0.74	0.0	0.04	15.48	0.00	2.191	10.91	1.08	2.9	97.1	0.0	-0.18	1.43	0.70	0.81	3.17	3485	448	3	0	0	0	0	logfile
✘	7Ji3	22343	2023-11-13	2020-07-22	3.46	4.28	—	4.0	0.005	0.79	0.0	0.05	13.46	0.01	2.365	6.77	0.00	3.6	96.4	0.0	-5.13	0.64	0.72	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6000	777	3	0	0	0	0	logfile
✔	7WSi	32759	2023-11-13	2022-01-29	3.32	3.90	—	3.8	0.003	0.67	0.0	0.04	12.25	0.00	2.122	8.82	0.00	7.9	92.1	0.0	-0.23	0.66	0.77	1.76	3.8	0.003	0.82	0.0	0.05	15.61	0.00	2.155	11.27	0.15	8.5	91.5	0.0	-0.17	1.48	0.58	0.79	1.72	5701	743	3	0	0	0	0	logfile
✔	7M4U	23666	2023-11-13	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.004	0.72	0.0	0.04	15.88	0.01	1.748	5.68	2.51	3.4	96.5	0.2	0.80	1.73	0.82	0.81	3.58	51764	2386	27	1528	84	191	0	logfile
✘	7NKZ	12451	2023-11-13	2021-02-19	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6424	792	4	0	5	42	0	logfile
✔	3JC2	3245	2023-11-13	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.86	0.0	0.04	17.18	0.00	2.128	14.33	0.49	7.4	91.9	0.6	-1.41	3.32	0.24	0.53	1.66	3911	482	4	0	32	0	0	logfile
✘	8A01	15044	2023-11-13	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✔	8E4Q	27896	2023-11-13	2022-08-18	3.51	3.90	3.48	3.7	0.004	0.62	0.0	0.04	13.32	0.02	1.966	7.31	0.15	3.5	96.5	0.0	1.23	0.68	0.78	1.65	3.7	0.003	0.67	0.0	0.04	14.33	0.00	2.064	4.76	0.26	3.4	96.6	0.0	2.13	0.70	0.70	0.79	1.64	53136	3576	8	0	4	0	25664	logfile
✔	7P5M	13201	2023-11-13	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.60	0.0	0.04	13.68	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.003	0.63	0.0	0.04	16.50	0.00	2.182	9.28	0.31	1.2	98.8	0.0	3.94	0.44	0.52	0.77	1.01	6204	788	8	0	12	0	0	logfile
✘	7YPQ	34011	2023-11-13	2022-08-04	3.1	3.22	2.15	3.2	0.005	0.63	0.0	0.05	17.29	0.00	2.261	7.93	0.00	2.2	97.8	0.0	-0.66	0.52	0.79	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2915	327	2	11	0	0	0	logfile
✔	6XPE	22286	2023-11-13	2020-07-08	4.1	4.23	—	4.2	0.006	0.82	0.0	0.04	14.30	0.00	1.492	20.11	2.08	10.6	88.1	1.3	-5.36	0.60	0.84	—	4.2	0.003	0.66	0.0	0.04	13.58	0.00	1.803	10.92	0.00	5.3	94.7	0.0	-0.18	2.62	0.61	0.82	—	4292	554	4	0	8	0	0	logfile
✔	6VU5	21387	2023-11-13	2020-02-14	3.5	3.59	3.38	3.5	0.007	0.99	0.0	0.06	15.26	0.01	2.230	8.37	0.00	9.0	91.0	0.0	-4.94	0.72	0.75	1.82	3.5	0.003	0.71	0.0	0.04	16.93	0.00	2.177	15.77	1.05	5.6	94.4	0.0	-2.22	0.54	0.71	0.73	0.83	4657	576	2	0	27	0	0	logfile
✔	8DVR	27743	2023-11-13	2022-07-29	3.3	3.38	3.19	3.4	0.002	0.46	0.0	0.04	13.62	0.00	2.267	8.74	1.40	4.5	95.5	0.0	-2.25	0.67	0.75	1.81	3.4	0.003	0.58	0.0	0.04	15.87	0.00	2.275	9.37	0.53	4.9	95.1	0.0	0.20	0.55	0.71	0.82	2.07	5601	635	4	21	2	0	0	logfile
✔	6Po3	20408	2023-11-13	2019-07-03	4.28	4.38	—	4.3	0.003	0.65	0.0	0.04	11.03	0.00	2.179	2.53	0.00	0.4	99.6	0.0	-1.68	0.75	0.75	—	4.3	0.003	0.55	0.0	0.04	13.05	0.00	1.942	9.70	0.04	3.5	96.5	0.0	0.04	2.55	0.79	0.79	—	53225	3406	20	0	12	0	26724	logfile
✔	5TTP	8467	2023-11-13	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.77	0.0	0.04	5.16	0.00	2.264	6.32	0.00	13.8	85.9	0.4	0.24	1.81	0.66	0.69	—	5616	1138	2	0	0	0	0	logfile
✔	8ERo	28556	2023-11-13	2022-10-12	3.2	3.41	3.03	3.5	0.010	0.86	0.0	0.04	19.41	0.01	2.011	5.62	0.00	8.8	91.2	0.0	0.41	0.54	0.73	2.14	3.5	0.003	0.62	0.0	0.04	16.87	0.01	1.934	7.36	0.95	7.9	92.1	0.0	0.19	1.18	0.62	0.79	1.61	6154	728	4	0	32	0	0	logfile
✔	6MLU	9146	2023-11-13	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.16	0.0	0.06	17.79	0.01	2.194	31.82	1.39	15.2	84.8	0.0	-2.34	3.45	0.43	0.76	—	2516	306	2	0	0	0	0	logfile
✔	7F3U	31441	2023-11-13	2021-06-17	4.0	4.20	—	4.2	0.006	0.89	0.0	0.05	11.59	0.00	2.275	21.93	0.00	8.6	91.4	0.0	2.22	0.60	0.78	—	4.2	0.003	0.89	0.0	0.04	15.55	0.00	2.169	16.88	0.35	6.0	94.0	0.0	3.72	1.30	0.59	0.77	—	4274	656	2	0	0	0	0	logfile

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