Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EF6	28069	2023-11-15	2022-09-08	3.2	2.91	3.02	3.1	0.005	0.87	0.0	0.07	7.72	0.01	2.267	4.03	0.00	1.3	98.7	0.0	0.00	0.59	0.75	2.50	3.1	0.003	0.58	0.0	0.04	13.52	0.00	2.120	7.98	0.08	1.4	98.6	0.0	1.89	1.30	0.60	0.82	2.94	11686	1439	9	0	12	0	0	logfile
✔	6CU8	7619	2023-11-13	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.003	0.71	0.0	0.05	13.21	0.00	2.161	12.65	0.65	10.0	90.0	0.0	-3.04	1.78	0.42	0.72	2.87	2880	410	10	0	0	0	0	logfile
✔	7QND	14075	2023-11-16	2021-12-20	3.4	3.55	—	3.4	0.003	0.46	0.0	0.04	7.75	0.00	2.210	4.79	0.45	0.6	99.4	0.0	2.54	0.75	0.83	3.55	3.4	0.003	0.71	0.0	0.04	13.71	0.00	2.126	11.53	0.56	1.6	98.4	0.0	1.18	3.38	0.76	0.87	3.50	16810	1995	19	0	33	0	0	logfile
✔	6XGC	22180	2023-11-16	2020-06-17	4.1	4.25	—	4.2	0.002	0.43	0.0	0.04	7.79	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.66	0.0	0.04	11.21	0.00	2.197	11.45	0.05	3.6	96.4	0.0	0.02	1.31	0.82	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	7TQV	26073	2023-11-17	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	7.79	0.00	2.162	5.00	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.002	0.56	0.0	0.04	12.71	0.00	2.214	7.27	0.27	3.4	96.6	0.0	-0.43	1.51	0.73	0.77	2.15	17792	2083	8	66	0	0	0	logfile
✔	7DK6	30704	2023-11-20	2020-11-23	4.3	3.67	—	3.5	0.003	0.54	0.0	0.04	7.79	0.00	2.096	1.23	0.06	3.0	97.0	0.0	-3.17	0.59	0.45	—	3.5	0.003	0.68	0.0	0.04	12.09	0.00	2.093	15.32	0.03	5.8	94.2	0.0	-1.20	1.82	0.73	0.64	—	31448	4042	7	0	0	0	0	logfile
✔	7DR6	30824	2023-11-14	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	10.05	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.004	0.77	0.0	0.05	13.22	0.00	2.079	15.91	0.06	3.7	96.2	0.0	0.18	2.26	0.73	0.72	—	59957	7661	35	0	0	0	0	logfile
✔	7WKD	32565	2023-11-17	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	6.84	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.0	0.017	0.79	0.0	0.04	14.70	0.01	1.891	15.45	0.42	3.8	96.2	0.0	0.29	1.05	0.72	0.75	2.56	17515	1120	6	0	0	0	8712	logfile
✔	8F7R	28908	2023-11-15	2022-11-20	3.28	2.92	3.26	3.4	0.014	0.84	0.0	0.07	7.82	0.01	2.260	4.20	0.00	1.5	98.5	0.0	-0.71	0.54	0.70	1.83	3.4	0.003	0.59	0.0	0.04	14.02	0.00	2.014	12.04	0.32	1.5	98.5	0.0	1.10	1.17	0.57	0.79	2.32	11697	1443	11	0	12	0	0	logfile
✔	6WL1	21815	2023-11-16	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.51	0.0	0.04	16.18	0.00	2.241	6.67	0.67	0.0	100.0	0.0	6.23	0.72	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	6N2P	9332	2023-11-16	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.003	0.63	0.0	0.04	10.57	0.00	2.170	7.41	0.00	9.3	90.7	0.0	0.33	1.38	0.59	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	7XA3	33086	2023-11-14	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.62	0.0	0.04	14.17	0.00	2.192	9.41	2.38	3.4	96.6	0.0	1.61	1.17	0.78	0.78	2.75	9591	1220	6	0	0	0	0	logfile
✔	6PZi	20535	2023-11-14	2019-07-31	4.5	4.80	—	4.4	0.005	1.13	0.0	0.05	7.87	0.01	2.253	2.60	0.00	6.3	93.7	0.0	-3.83	0.67	0.80	—	4.4	0.003	0.66	0.0	0.04	7.97	0.00	2.154	7.80	0.00	3.6	96.4	0.0	1.80	0.57	0.68	0.84	—	7985	1412	1	0	1	0	0	logfile
✔	7LH3	23335	2023-11-15	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.62	0.0	0.04	10.77	0.00	2.289	10.84	0.00	3.5	96.5	0.0	1.90	1.12	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	7VXD	32176	2023-11-20	2021-11-12	4.0	4.60	—	4.2	0.003	0.50	0.0	0.04	7.89	0.00	2.091	7.52	0.03	4.0	95.9	0.2	-2.30	0.70	0.65	—	4.3	0.003	0.73	0.0	0.04	14.17	0.00	2.102	16.36	0.45	4.0	96.0	0.0	-0.78	1.63	0.74	0.74	—	30194	3829	4	0	0	0	0	logfile
✘	8H0Q	34414	2023-11-14	2022-09-30	3.3	3.78	3.20	3.7	0.019	0.59	0.0	0.09	7.89	0.00	2.260	7.81	0.62	1.0	99.0	0.0	-1.95	0.63	0.72	0.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8949	1134	7	0	3	0	0	logfile
✔	5UVN	8608	2023-11-16	2017-02-20	3.96	4.04	—	4.0	0.012	1.13	0.0	0.06	7.90	0.01	2.013	20.37	0.40	8.5	90.9	0.6	-4.03	0.73	0.69	2.65	4.0	0.007	0.91	0.0	0.05	13.29	0.01	2.136	14.41	0.47	10.4	88.8	0.7	-1.96	1.49	0.82	0.83	2.91	16902	2214	6	0	282	0	0	logfile
✘	7DK4	30702	2023-11-21	2020-11-23	3.8	3.20	—	3.4	0.003	0.55	0.0	0.04	7.92	0.00	2.106	1.33	0.15	2.8	97.2	0.0	-3.26	0.58	0.47	1.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34707	4470	9	0	0	0	0	logfile
✘	8HGo	34744	2023-11-14	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	7.94	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9227	1178	6	0	8	0	0	logfile
✔	7LRC	23494	2023-11-13	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	7.94	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.60	0.0	0.04	11.45	0.00	2.007	9.75	0.90	0.8	99.2	0.0	3.50	0.56	0.76	0.86	3.04	6202	762	6	0	6	0	0	logfile

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