Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KY5	23068	2023-11-15	2020-12-07	3.98	4.52	—	4.3	0.004	1.09	0.0	0.05	12.78	0.01	2.200	16.72	0.07	6.6	93.4	0.0	-1.06	0.72	0.75	0.32	4.3	0.004	0.87	0.0	0.04	15.20	0.00	1.967	21.02	0.74	7.9	92.1	0.0	-1.15	1.03	0.73	0.78	0.22	12483	1534	6	0	15	0	0	logfile
✔	8HAH	34589	2023-11-16	2022-10-26	3.9	5.19	3.80	2.8	0.003	0.55	0.0	0.03	24.08	0.00	2.274	8.74	0.00	2.6	97.4	0.0	1.59	0.83	0.62	0.32	2.8	0.005	0.71	0.0	0.04	27.27	0.00	2.102	19.77	0.09	3.6	96.4	0.0	1.16	2.58	0.91	0.82	0.72	17096	1287	11	328	0	0	0	logfile
✔	5TJi	8414	2023-11-19	2016-10-04	3.8	8.35	—	3.4	0.007	0.98	0.0	0.06	11.75	0.00	2.483	1.87	0.41	6.0	93.8	0.2	-3.10	0.73	0.80	0.32	3.7	0.003	0.64	0.0	0.04	12.64	0.00	2.134	10.94	0.14	2.6	97.4	0.0	0.71	0.70	0.73	0.84	0.89	27720	3528	4	0	4	0	0	logfile
✔	3JAD	6344	2023-11-15	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	8.45	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.76	0.0	0.04	12.95	0.00	2.195	16.00	0.17	4.0	96.0	0.0	0.22	1.23	0.70	0.77	0.37	12705	1685	15	0	15	0	0	logfile
✔	7XUN	33475	2023-11-13	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.003	0.72	0.0	0.05	15.95	0.00	2.159	12.95	0.33	4.9	95.1	0.0	-0.13	1.11	0.72	0.77	0.22	5591	741	1	0	0	0	0	logfile
✔	7P1H	13159	2023-11-16	2021-07-01	3.9	4.12	—	3.9	0.005	1.01	0.0	0.05	14.14	0.01	2.016	12.38	0.00	5.7	94.3	0.0	-1.60	0.81	0.60	0.33	3.9	0.003	0.64	0.0	0.04	15.61	0.00	1.842	13.67	0.26	6.5	93.5	0.0	-0.17	1.65	0.86	0.74	0.91	13957	898	4	0	2	0	6917	logfile
✔	7YR7	34048	2023-11-13	2022-08-09	3.8	4.63	4.40	4.6	0.008	1.25	1.0	0.09	21.39	0.01	2.385	7.94	4.74	16.7	83.3	0.0	-5.36	0.64	0.60	0.33	4.6	0.005	0.85	0.0	0.04	21.04	0.01	2.101	22.72	1.09	21.7	78.3	0.0	-3.50	1.49	0.67	0.66	0.71	5102	330	7	118	0	0	0	logfile
✔	7S1Y	24812	2023-11-14	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.72	2.0	0.04	14.86	0.00	2.189	13.61	0.52	6.9	92.9	0.2	-0.45	0.58	0.51	0.64	0.51	6580	948	4	0	6	0	0	logfile
✔	6o85	0651	2023-11-20	2019-03-08	3.03	3.40	—	3.4	0.005	0.87	0.0	0.15	12.43	0.01	2.239	3.91	0.89	4.6	95.4	0.0	-3.78	0.67	0.65	0.33	3.3	0.004	0.68	0.0	0.05	14.66	0.00	2.183	9.67	0.46	4.5	95.5	0.0	0.03	1.05	0.77	0.87	2.75	28576	4100	14	0	15	0	0	logfile
✔	7Y36	33590	2023-11-14	2022-06-10	2.8	3.76	2.72	3.7	0.007	0.73	0.0	0.05	12.89	0.00	2.152	7.06	0.00	4.2	95.8	0.0	-1.26	0.57	0.54	0.34	3.6	0.003	0.75	0.0	0.04	16.83	0.00	0.249	10.79	3.23	3.9	96.1	0.0	0.37	1.49	0.63	0.77	2.04	9206	1151	7	0	1	0	0	logfile
✔	6UM7	20819	2023-11-17	2019-10-09	3.5	4.23	—	3.5	0.018	2.07	12.0	0.18	11.26	0.03	2.132	7.28	0.89	5.0	94.2	0.9	0.01	0.75	0.66	0.34	3.5	0.004	0.85	0.0	0.05	13.92	0.00	2.114	12.30	0.33	6.5	92.8	0.7	-0.66	1.36	0.79	0.82	2.06	20334	2490	30	0	78	0	0	logfile
✔	7V9A	31813	2023-11-16	2021-08-24	3.94	3.46	—	3.4	0.002	0.58	0.0	0.03	14.82	0.00	2.260	6.87	0.00	5.2	94.8	0.0	-4.05	0.66	0.57	0.34	3.1	0.004	0.76	0.0	0.04	17.22	0.00	2.122	16.02	0.40	9.2	90.8	0.0	-2.34	1.91	0.72	0.69	1.17	16876	1723	10	146	0	0	0	logfile
✔	8FiX	29212	2023-11-19	2022-12-17	3.9	4.15	3.95	3.9	0.003	0.69	0.0	0.05	14.21	0.00	1.933	14.02	0.07	12.8	87.1	0.2	-2.81	0.79	0.65	0.34	3.9	0.003	0.68	0.0	0.04	15.99	0.00	2.027	12.63	0.37	4.8	95.1	0.0	-0.70	2.14	0.81	0.70	0.36	25943	3185	9	49	3	0	0	logfile
✔	7WK5	32559	2023-11-20	2022-01-08	3.66	3.93	—	3.7	0.005	0.84	1.0	0.05	13.40	0.01	1.646	3.40	0.27	3.9	96.0	0.1	-4.59	0.66	0.58	0.35	3.8	0.003	0.71	0.0	0.04	15.43	0.00	2.119	12.93	0.30	3.6	96.4	0.0	-1.37	1.01	0.68	0.64	0.63	29601	3750	4	0	0	0	0	logfile
✔	8HSJ	34999	2023-11-17	2022-12-19	3.6	4.38	3.44	3.4	0.004	0.80	0.0	0.05	14.73	0.01	1.788	16.52	4.93	3.7	96.0	0.3	-0.81	0.82	0.68	0.35	3.9	0.004	0.81	0.0	0.04	16.44	0.01	1.074	23.89	0.99	3.5	96.2	0.3	-0.24	1.32	0.85	0.73	0.36	17244	2166	12	0	18	0	0	logfile
✔	6UKT	20812	2023-11-14	2019-10-05	3.87	4.71	—	4.3	0.007	1.03	0.0	0.06	16.89	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.003	0.71	0.0	0.04	17.55	0.00	2.116	15.46	0.11	12.1	87.9	0.0	-2.31	0.57	0.90	0.84	0.27	8979	1204	6	0	0	0	0	logfile
✔	4UY8	2773	2023-11-21	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.34	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.005	0.68	0.0	0.03	17.03	0.01	1.621	60.74	1.89	17.4	80.4	2.2	-3.49	1.57	0.58	0.80	1.12	92995	3468	47	3049	144	439	8	logfile
✔	7o6B	12737	2023-11-16	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.56	0.0	0.04	14.10	0.00	2.026	9.46	0.13	3.6	96.4	0.0	0.66	1.15	0.76	0.69	0.37	14200	879	1	0	0	0	7040	logfile
✔	8D43	27173	2023-11-14	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	18.27	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.2	0.004	0.84	0.0	0.05	18.51	0.01	2.058	18.77	3.10	5.2	94.7	0.1	-1.45	2.71	0.41	0.35	0.56	7763	962	5	0	6	1	0	logfile
✔	7DGD	30671	2023-11-15	2020-11-11	3.96	4.40	—	4.2	0.015	2.08	10.0	0.12	15.16	0.01	1.930	4.79	3.87	9.2	89.9	0.9	-4.26	0.61	0.53	0.38	4.2	0.004	0.85	0.0	0.04	16.24	0.00	2.143	19.09	0.15	9.4	90.5	0.1	-2.00	1.90	0.69	0.68	0.77	12381	1572	2	0	0	0	0	logfile

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