Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5iRZ	8118	2023-11-15	2016-03-15	3.28	3.63	3.24	3.5	0.010	1.31	0.0	0.23	18.02	0.00	2.008	9.02	0.00	7.5	92.5	0.0	-5.78	0.68	0.77	4.48	3.5	0.003	0.62	0.0	0.04	16.01	0.00	2.138	8.61	0.55	6.9	93.1	0.0	0.88	0.69	0.65	0.84	3.02	12504	1576	8	0	24	0	0	logfile
✔	5iS0	8119	2023-11-15	2016-03-15	3.43	3.36	3.37	3.2	0.015	1.24	0.0	0.06	10.52	0.01	1.283	5.42	0.00	10.1	89.7	0.3	-5.27	0.63	0.73	2.61	3.2	0.003	0.75	0.0	0.04	14.23	0.00	2.152	11.06	0.28	5.4	94.6	0.0	-0.22	1.47	0.63	0.81	2.48	11808	1576	8	0	4	0	0	logfile
✔	5iT9	8124	2023-11-19	2016-03-16	3.8	3.86	3.80	3.9	0.007	1.31	42.0	0.10	21.51	0.01	0.713	10.39	9.44	11.2	84.3	4.6	-3.05	0.60	0.76	0.99	3.8	0.005	0.82	0.0	0.04	19.87	0.01	1.831	18.69	1.00	11.5	87.1	1.4	-1.96	1.72	0.62	0.79	0.92	80144	4848	43	1972	83	0	0	logfile
✔	5J8V	8073	2023-11-18	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	0.96	4.0	0.04	9.37	0.00	2.173	6.74	0.32	9.5	88.8	1.7	0.19	0.81	0.75	0.74	—	73616	13812	4	0	0	0	0	logfile
✔	5JLF	8162	2023-11-16	2016-04-27	3.6	3.99	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.67	0.69	2.49	3.7	0.004	0.77	0.0	0.04	14.98	0.00	1.921	15.48	0.39	3.8	96.0	0.3	-0.38	1.42	0.70	0.75	2.02	15800	1835	12	0	280	0	0	logfile
✔	5JLF	8163	2023-11-16	2016-04-27	3.6	3.82	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.64	0.74	2.52	3.7	0.004	0.74	0.0	0.04	15.08	0.00	1.930	13.10	0.45	3.6	96.1	0.3	0.05	1.43	0.68	0.84	1.89	15800	1835	12	0	280	0	0	logfile
✔	5JUY	8178	2023-11-19	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	10.72	0.00	1.447	16.11	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.003	0.66	0.0	0.04	12.04	0.00	2.092	12.45	0.00	5.3	94.6	0.1	-0.61	1.62	0.84	0.69	—	76058	9461	32	0	14	0	0	logfile
✔	5JZH	8185	2023-11-20	2016-05-16	3.9	4.02	—	4.0	0.015	2.15	0.0	0.08	10.55	0.02	1.650	4.16	0.00	9.4	87.9	2.7	-1.57	0.81	0.81	2.71	4.0	0.003	0.63	0.0	0.04	14.24	0.00	1.878	8.40	0.12	7.7	92.3	0.0	-1.12	0.97	0.78	0.84	1.97	90790	5936	14	0	0	0	44226	logfile
✔	5JZW	8188	2023-11-20	2016-05-17	4.46	4.55	—	4.5	0.015	1.85	0.0	0.09	10.60	0.02	1.421	10.14	0.00	10.6	83.4	5.9	-2.90	0.71	0.72	—	4.5	0.005	0.76	0.0	0.04	13.23	0.01	1.953	17.63	0.02	12.6	86.7	0.7	-2.24	1.26	0.75	0.79	—	83419	5474	14	0	0	0	40509	logfile
✔	5K0Z	8191	2023-11-14	2016-05-17	2.8	4.15	—	2.8	0.011	1.04	0.0	0.06	10.64	0.01	2.056	18.30	0.00	2.9	97.1	0.0	-4.11	0.73	0.58	1.27	3.1	0.005	1.15	0.0	0.06	17.03	0.01	2.099	33.56	4.91	4.5	95.5	0.0	-0.35	1.52	0.87	0.84	1.07	9749	1268	8	0	0	41	0	logfile
✔	5K10	8192	2023-11-15	2016-05-17	3.8	4.74	—	3.8	0.009	0.93	0.0	0.06	12.22	0.02	2.138	33.42	0.30	6.9	92.6	0.5	-4.07	0.80	0.57	0.98	3.8	0.004	0.84	0.0	0.04	16.04	0.00	2.197	24.77	0.15	3.7	96.0	0.3	-0.14	1.89	0.92	0.86	1.02	6338	794	4	0	2	0	0	logfile
✔	5K11	8193	2023-11-15	2016-05-17	3.8	4.50	—	3.8	0.012	1.23	0.0	0.06	12.12	0.01	2.061	29.53	0.30	6.1	93.4	0.5	-4.89	0.80	0.59	1.53	3.8	0.004	0.88	0.0	0.05	15.49	0.00	2.139	21.59	0.15	4.5	95.5	0.0	-0.28	1.64	0.90	0.84	1.22	6338	794	4	0	2	0	0	logfile
✔	5K12	8194	2023-11-16	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.003	0.56	0.0	0.04	15.71	0.01	2.213	9.95	0.27	1.9	98.1	0.0	2.18	0.90	0.71	0.89	3.52	14856	1764	12	0	0	1086	0	logfile
✔	5K7L	8215	2023-11-19	2016-05-26	3.78	6.37	—	3.6	0.008	1.36	20.0	0.07	13.27	0.00	2.315	9.11	0.35	7.3	92.6	0.1	-0.20	0.75	0.79	1.04	3.6	0.003	0.70	0.0	0.04	13.79	0.00	2.151	11.88	0.22	4.0	96.0	0.0	1.44	2.35	0.75	0.80	0.78	24696	3372	12	0	8	0	0	logfile
✔	5KEL	8240	2023-11-17	2016-06-09	4.3	4.47	—	4.3	0.015	1.82	0.0	0.10	11.37	0.01	1.763	12.56	0.45	3.4	95.3	1.3	1.64	0.78	0.75	—	4.3	0.004	0.86	0.0	0.05	13.58	0.00	2.105	19.99	0.00	8.5	91.1	0.4	-0.95	1.07	0.80	0.81	—	19278	2409	33	0	45	0	0	logfile
✔	5KEN	8242	2023-11-16	2016-06-09	4.3	6.36	5.67	5.5	0.014	1.82	4.0	0.19	11.60	0.01	1.282	7.71	0.22	2.9	95.6	1.4	1.45	0.82	0.71	—	5.5	0.006	0.91	0.0	0.05	13.33	0.01	1.950	43.76	0.00	10.1	89.3	0.7	-2.23	2.80	0.85	0.81	—	16913	2147	24	0	24	0	0	logfile
✔	5KGF	8246	2023-11-16	2016-06-13	4.54	4.64	—	4.5	0.009	1.37	2.0	0.07	27.90	0.01	1.243	27.10	0.12	6.5	93.1	0.4	-4.86	0.79	0.76	—	4.5	0.005	0.73	0.0	0.04	26.58	0.01	2.134	18.68	0.00	6.4	93.3	0.3	-0.81	1.80	0.83	0.84	—	13782	986	14	290	0	0	0	logfile
✔	5KMG	8266	2023-11-14	2016-06-27	3.5	4.13	—	4.0	0.019	1.34	0.0	0.10	13.69	0.02	1.894	3.71	0.00	5.8	92.0	2.2	-1.01	0.49	0.75	2.38	4.0	0.003	0.72	0.0	0.04	17.25	0.00	1.965	12.24	0.33	3.3	96.6	0.0	1.32	1.03	0.46	0.79	2.18	111594	13860	70	14	42	0	0	logfile
✔	5KUF	8289	2023-11-18	2016-07-13	3.8	3.80	—	3.7	0.009	1.02	0.0	0.05	8.87	0.01	2.021	29.22	0.08	15.5	84.4	0.1	-5.82	0.61	0.71	1.68	3.7	0.003	0.69	0.0	0.04	13.57	0.00	2.155	13.20	0.35	5.9	94.1	0.0	-1.38	1.57	0.61	0.71	1.29	23728	3000	8	0	4	0	0	logfile
✔	5L08	8300	2023-11-16	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.4	0.006	1.28	0.0	0.06	15.37	0.01	1.912	43.78	0.00	8.2	91.8	0.0	-2.70	3.88	0.27	0.71	—	13617	1629	9	0	0	0	0	logfile

• ← previous
• Page 8 of 528
• next →