Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QDV	4525	2023-11-16	2019-01-03	3.3	3.34	—	3.3	0.008	1.15	4.0	0.08	15.82	0.01	0.962	10.58	2.45	5.0	94.6	0.3	-3.15	0.53	0.72	2.12	3.3	0.008	0.71	0.0	0.05	17.14	0.00	1.909	16.02	0.45	5.1	94.8	0.1	0.01	1.46	0.52	0.67	1.96	121152	14611	60	348	18	0	0	logfile
✔	6W6H	21555	2023-11-20	2020-03-16	3.3	3.65	—	3.5	0.004	0.77	0.0	0.04	15.48	0.00	0.962	9.97	1.39	9.9	89.9	0.2	-4.10	0.84	0.85	2.13	3.5	0.003	0.65	0.0	0.04	16.77	0.00	2.179	8.28	0.92	9.1	90.9	0.0	-1.23	1.21	0.83	0.87	1.92	28427	3615	13	0	38	0	0	logfile
✔	7CQK	30442	2023-11-14	2020-08-11	3.3	3.38	—	3.3	0.011	1.34	3.0	0.08	19.32	0.01	0.963	29.97	21.66	11.3	87.7	1.0	-5.35	0.70	0.84	2.60	3.3	0.002	0.66	0.0	0.04	16.99	0.00	2.213	6.79	0.75	4.4	95.5	0.1	-1.11	2.02	0.71	0.86	2.47	8859	1116	7	0	2	0	0	logfile
✔	7UGo	26492	2023-11-19	2022-03-25	4.1	4.21	4.03	4.2	0.004	0.64	0.0	0.25	12.56	0.00	0.965	8.10	0.15	5.9	94.1	0.0	-3.57	0.77	0.82	—	4.2	0.007	0.83	0.0	0.05	13.27	0.00	2.141	12.58	0.00	9.6	90.4	0.0	-2.19	1.26	0.78	0.83	—	25590	3138	44	0	87	0	0	logfile
✔	5LMV	4083	2023-11-14	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.14	0.01	0.977	14.22	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.003	0.72	0.0	0.04	16.73	0.01	2.048	27.68	0.00	6.8	92.7	0.5	-1.55	2.19	0.77	0.75	—	59470	3124	30	1612	4	0	0	logfile
✔	6ZLQ	11272	2023-11-21	2020-07-01	3.3	3.41	—	3.3	0.009	0.74	0.0	0.04	17.49	0.00	0.983	15.93	8.48	3.6	96.4	0.0	-3.01	0.81	0.83	1.76	3.3	0.003	0.62	0.0	0.04	18.12	0.00	1.266	15.10	0.74	1.0	99.0	0.0	3.43	0.70	0.80	0.84	1.08	33823	4185	38	0	16	0	0	logfile
✔	8CL3	16711	2023-11-15	2023-02-16	3.14	3.51	3.07	3.5	0.005	0.97	0.0	0.13	12.73	0.01	0.985	10.68	0.00	0.9	99.1	0.0	-1.02	0.59	0.70	2.88	3.5	0.003	0.56	0.0	0.04	16.03	0.00	2.337	7.97	0.00	0.8	99.2	0.0	1.66	0.56	0.46	0.65	2.74	10272	1350	12	0	0	0	0	logfile
✔	7WTD	32779	2023-11-19	2022-02-04	3.9	5.03	—	4.3	0.023	1.20	1.0	0.05	15.55	0.01	0.990	21.59	1.15	7.3	92.6	0.1	-0.88	0.81	0.61	0.10	4.4	0.004	0.94	1.0	0.05	16.56	0.01	2.083	25.45	0.42	8.2	91.8	0.1	-1.39	4.65	0.85	0.72	0.20	27137	3491	6	0	4	0	0	logfile
✔	7CQi	30441	2023-11-14	2020-08-11	3.2	3.33	—	3.3	0.012	1.51	5.0	0.09	16.96	0.01	0.997	19.68	13.06	10.7	88.6	0.7	-5.50	0.71	0.85	3.34	3.3	0.003	0.70	0.0	0.04	16.28	0.00	2.067	6.09	0.53	6.5	93.4	0.1	-1.91	2.28	0.71	0.86	2.54	8881	1117	6	0	2	0	0	logfile
✔	7ADK	11729	2023-11-17	2020-09-15	2.8	3.03	2.81	3.0	0.014	2.03	21.0	0.12	15.24	0.02	0.997	1.77	0.43	9.4	90.6	0.0	-2.46	0.47	0.68	3.61	3.0	0.003	0.67	0.0	0.04	17.37	0.00	1.872	9.59	2.94	8.2	91.8	0.0	-1.87	2.91	0.56	0.76	2.72	20869	1317	2	0	0	0	10260	logfile
✔	6FVX	4323	2023-11-14	2018-03-05	4.9	4.97	—	4.9	0.036	3.46	834.0	0.21	17.27	0.03	1.000	2.06	2.81	5.4	92.9	1.7	-2.42	0.52	0.59	—	4.9	0.004	0.85	1.0	0.05	14.48	0.01	1.862	19.81	0.08	4.3	95.5	0.2	-0.59	1.27	0.54	0.76	—	110471	14020	53	0	12	0	0	logfile
✔	7V5J	31725	2023-11-22	2021-08-17	2.8	3.15	—	2.5	0.013	1.55	32.0	0.11	14.16	0.00	1.014	9.67	9.26	4.6	94.3	1.0	1.20	0.80	0.66	1.10	2.6	0.005	0.89	0.0	0.05	15.62	0.01	1.981	17.91	3.22	9.0	90.7	0.3	-0.98	1.07	0.85	0.78	1.80	36189	4707	9	0	0	0	0	logfile
✔	7S9U	24937	2023-11-17	2021-09-21	3.2	3.94	—	3.1	0.011	0.96	0.0	0.06	18.26	0.01	1.016	12.03	1.90	15.2	84.3	0.4	-5.38	0.66	0.63	2.37	3.1	0.005	0.63	0.0	0.04	17.45	0.00	2.042	9.68	0.46	8.7	91.2	0.1	-2.40	0.40	0.89	0.90	1.92	68620	2090	19	2436	0	0	0	logfile
✘	8BJQ	16090	2023-11-21	2022-11-05	3.8	4.31	3.77	3.7	0.005	0.69	1.0	0.04	15.16	0.01	1.017	13.25	0.16	4.4	95.4	0.2	-0.16	0.72	0.78	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	141384	8086	64	3580	211	0	0	logfile
✔	7X0S	32923	2023-11-17	2022-02-22	3.1	3.13	—	3.1	0.004	0.61	5.0	0.05	10.92	0.00	1.018	6.85	3.51	4.8	95.2	0.0	-5.89	0.76	0.77	1.78	3.1	0.003	0.70	1.0	0.04	15.42	0.00	1.877	9.94	0.28	5.7	94.3	0.0	-0.19	4.07	0.80	0.85	1.86	68346	8866	49	0	48	16	0	logfile
✔	7X0V	32926	2023-11-15	2022-02-22	3.2	3.39	—	3.3	0.005	0.61	5.0	0.05	10.89	0.00	1.018	6.95	3.50	4.9	95.1	0.0	-5.90	0.79	0.77	1.76	3.3	0.005	0.77	1.0	0.05	15.98	0.00	1.826	11.20	0.57	6.0	94.0	0.0	-0.07	4.29	0.82	0.86	1.59	65000	8440	48	0	48	16	0	logfile
✔	7RJC	24484	2023-11-19	2021-07-20	3.3	3.46	—	3.4	0.007	0.82	2.0	0.05	13.58	0.00	1.018	11.43	0.20	4.6	95.2	0.2	0.13	0.56	0.68	3.90	3.4	0.004	0.59	0.0	0.04	15.37	0.00	1.959	9.63	0.20	3.9	96.1	0.0	0.68	0.80	0.66	0.81	3.67	28373	1907	13	0	6	0	13664	logfile
✔	5ND8	3624	2023-11-21	2017-03-07	3.7	3.81	—	3.7	0.009	1.03	1.0	0.05	14.85	0.01	1.019	7.55	0.73	17.3	82.1	0.6	-5.61	0.77	0.77	1.17	3.7	0.003	0.63	0.0	0.03	15.09	0.00	1.995	15.12	0.56	9.9	90.0	0.0	-2.51	1.30	0.80	0.81	1.28	141043	5462	52	4568	0	0	0	logfile
✔	6C23	7334	2023-11-15	2018-01-05	3.9	3.96	3.82	3.9	0.013	1.59	6.0	0.11	12.20	0.01	1.020	11.36	1.02	14.7	83.7	1.6	-4.76	0.72	0.82	2.32	3.9	0.005	0.87	0.0	0.05	15.99	0.00	2.080	18.79	0.86	11.2	88.6	0.2	-2.68	1.23	0.72	0.78	1.93	13440	1688	12	0	135	0	0	logfile
✔	7DMP	30766	2023-11-15	2020-12-05	3.2	2.58	—	3.3	0.003	0.76	1.0	0.05	14.92	0.01	1.020	10.12	1.61	7.4	92.6	0.0	-4.33	0.72	0.69	2.30	3.3	0.003	0.72	0.0	0.04	17.00	0.00	2.018	17.63	0.84	8.2	91.8	0.0	-2.51	0.74	0.76	0.76	2.30	12308	1528	6	0	0	0	0	logfile

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