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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8oLQ | 16961 | 2024-03-10 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.05 | 13.94 | 0.00 | 2.277 | 7.79 | 2.40 | 4.7 | 95.3 | 0.0 | -1.51 | 1.42 | 0.24 | 0.70 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✔ | 7RZR | 24775 | 2024-03-10 | 2021-08-27 | 2.27 | 2.24 | — | 2.0 | 0.007 | 0.40 | 0.0 | 0.04 | 14.34 | 0.00 | 2.436 | 3.23 | 0.00 | 1.9 | 98.1 | 0.0 | 2.50 | 0.79 | 0.80 | 3.37 | 2.0 | 0.003 | 0.32 | 0.0 | 0.03 | 15.17 | 0.00 | 2.285 | 5.04 | 0.35 | 0.0 | 100.0 | 0.0 | 6.38 | 0.31 | 0.82 | 0.83 | 3.42 | 2448 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C8P | 16490 | 2024-03-10 | 2023-01-20 | 4.1 | 5.09 | 4.13 | 5.5 | 0.002 | 0.67 | 0.0 | 0.05 | 13.50 | 0.00 | 2.267 | 6.06 | 0.00 | 2.6 | 97.4 | 0.0 | -2.08 | 0.66 | 0.67 | — | 5.0 | 0.004 | 0.74 | 0.0 | 0.05 | 13.71 | 0.00 | 2.115 | 22.57 | 0.00 | 8.1 | 91.9 | 0.0 | -1.12 | 1.09 | 0.68 | 0.73 | — | 2449 | 314 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZT | 24777 | 2024-03-10 | 2021-08-27 | 2.35 | 2.27 | — | 2.1 | 0.005 | 0.32 | 0.0 | 0.03 | 14.89 | 0.00 | 2.388 | 3.83 | 0.00 | 2.9 | 97.1 | 0.0 | 2.81 | 0.77 | 0.79 | 2.62 | 2.0 | 0.003 | 0.32 | 0.0 | 0.03 | 15.53 | 0.00 | 2.337 | 5.44 | 0.35 | 0.0 | 100.0 | 0.0 | 6.28 | 0.23 | 0.80 | 0.83 | 2.93 | 2451 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oT1 | 17166 | 2024-03-10 | 2023-04-20 | 2.59 | 3.30 | 2.25 | 3.4 | 0.013 | 2.40 | 0.0 | 0.13 | 17.35 | 0.01 | 2.477 | 0.00 | 0.00 | 0.0 | 100.0 | 0.0 | -3.37 | 0.47 | 0.69 | 6.48 | 3.4 | 0.005 | 0.95 | 0.0 | 0.05 | 16.67 | 0.00 | 2.061 | 15.50 | 4.37 | 7.1 | 92.9 | 0.0 | -1.96 | 1.53 | 0.39 | 0.73 | 5.57 | 2460 | 336 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oT3 | 17167 | 2024-03-10 | 2023-04-20 | 2.73 | 3.21 | 2.60 | 3.2 | 0.014 | 2.33 | 0.0 | 0.13 | 16.88 | 0.01 | 2.559 | 0.00 | 0.00 | 0.0 | 100.0 | 0.0 | -3.27 | 0.52 | 0.76 | 7.19 | 3.2 | 0.004 | 0.82 | 0.0 | 0.05 | 16.37 | 0.00 | 2.121 | 7.45 | 3.57 | 3.8 | 96.2 | 0.0 | -3.57 | 1.86 | 0.42 | 0.79 | 7.38 | 2460 | 336 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G8E | 29846 | 2024-03-10 | 2023-02-17 | 4.2 | 7.38 | 5.01 | 5.9 | 0.004 | 0.73 | 0.0 | 0.04 | 28.39 | 0.00 | 2.277 | 15.90 | 0.79 | 1.5 | 98.5 | 0.0 | 0.35 | 0.81 | 0.66 | — | 6.0 | 0.003 | 0.63 | 0.0 | 0.03 | 27.96 | 0.00 | 2.242 | 14.99 | 0.00 | 2.9 | 97.1 | 0.0 | 0.05 | 1.83 | 0.91 | 0.82 | — | 2464 | 140 | 3 | 64 | 0 | 0 | 0 | logfile |
✔ | 8Di5 | 27439 | 2024-03-10 | 2022-06-28 | 3.04 | 3.55 | 3.03 | 3.5 | 0.006 | 0.95 | 0.0 | 0.06 | 12.40 | 0.01 | 2.300 | 4.17 | 0.38 | 3.3 | 96.7 | 0.0 | -2.40 | 0.65 | 0.80 | 4.29 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 15.51 | 0.00 | 2.237 | 10.85 | 1.89 | 2.9 | 97.1 | 0.0 | -1.39 | 0.51 | 0.64 | 0.80 | 3.64 | 2467 | 311 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8XBi | 38219 | 2024-03-10 | 2023-12-06 | 3.06 | 2.87 | 3.01 | 3.0 | 0.013 | 1.26 | 0.0 | 0.07 | 13.63 | 0.01 | 2.221 | 7.35 | 0.00 | 1.7 | 98.3 | 0.0 | 1.92 | 0.37 | 0.67 | 0.71 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 16.58 | 0.00 | 2.210 | 9.13 | 2.18 | 2.0 | 98.0 | 0.0 | 2.23 | 0.43 | 0.48 | 0.72 | 0.93 | 2467 | 298 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7QKG | 14041 | 2024-03-10 | 2021-12-17 | 3.36 | 3.19 | 3.09 | 3.4 | 0.010 | 2.03 | 0.0 | 0.10 | 10.76 | 0.01 | 2.528 | 0.00 | 0.00 | 6.4 | 93.6 | 0.0 | -1.98 | 0.38 | 0.80 | 4.23 | 3.5 | 0.003 | 0.61 | 0.0 | 0.05 | 13.59 | 0.00 | 2.243 | 4.46 | 0.00 | 6.4 | 93.6 | 0.0 | -1.39 | 1.16 | 0.35 | 0.83 | 4.80 | 2469 | 162 | 3 | 0 | 0 | 0 | 1278 | logfile |
✔ | 7QK6 | 14039 | 2024-03-10 | 2021-12-17 | 2.27 | 2.34 | 2.17 | 2.3 | 0.011 | 1.84 | 0.0 | 0.09 | 9.70 | 0.01 | 2.520 | 0.00 | 0.00 | 6.4 | 93.6 | 0.0 | -1.99 | 0.37 | 0.79 | 7.78 | 2.3 | 0.003 | 0.60 | 0.0 | 0.05 | 16.13 | 0.00 | 2.371 | 4.46 | 0.69 | 5.8 | 94.2 | 0.0 | -2.05 | 1.45 | 0.38 | 0.85 | 7.07 | 2469 | 162 | 3 | 0 | 0 | 0 | 1278 | logfile |
✔ | 8EDL | 28035 | 2024-03-10 | 2022-09-05 | 3.7 | 3.30 | 3.60 | 3.1 | 0.002 | 0.52 | 0.0 | 0.03 | 11.07 | 0.00 | 2.307 | 6.09 | 0.00 | 2.1 | 97.7 | 0.3 | 2.83 | 0.62 | 0.61 | -0.09 | 3.1 | 0.002 | 0.56 | 0.0 | 0.03 | 13.85 | 0.00 | 2.336 | 7.26 | 3.08 | 2.1 | 97.9 | 0.0 | 3.82 | 1.11 | 0.68 | 0.73 | 2.47 | 2470 | 395 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DM0 | 27522 | 2024-03-10 | 2022-07-08 | 3.21 | 3.62 | 3.12 | 3.5 | 0.006 | 1.01 | 0.0 | 0.06 | 12.72 | 0.01 | 2.288 | 0.83 | 0.00 | 3.5 | 96.5 | 0.0 | -1.78 | 0.59 | 0.80 | 3.29 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.73 | 0.00 | 2.238 | 7.85 | 3.75 | 2.9 | 97.1 | 0.0 | -0.80 | 0.48 | 0.60 | 0.82 | 2.75 | 2480 | 314 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8DLY | 27520 | 2024-03-10 | 2022-07-08 | 3.0 | 3.63 | 2.92 | 3.6 | 0.005 | 0.94 | 0.0 | 0.06 | 12.41 | 0.01 | 2.317 | 1.86 | 0.37 | 3.5 | 96.5 | 0.0 | -1.46 | 0.63 | 0.81 | 3.36 | 3.6 | 0.004 | 0.73 | 0.0 | 0.05 | 15.92 | 0.00 | 2.294 | 13.42 | 5.24 | 2.9 | 97.1 | 0.0 | -1.02 | 1.23 | 0.62 | 0.81 | 3.71 | 2483 | 314 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7V47 | 31702 | 2024-03-10 | 2021-08-12 | 2.8 | 2.80 | — | 3.0 | 0.007 | 0.78 | 0.0 | 0.06 | 12.91 | 0.00 | 2.567 | 6.32 | 0.00 | 18.6 | 81.4 | 0.0 | -5.86 | 0.44 | 0.80 | 6.31 | 3.0 | 0.004 | 0.69 | 0.0 | 0.06 | 17.28 | 0.00 | 2.415 | 6.71 | 7.32 | 18.1 | 81.9 | 0.0 | -4.31 | 0.34 | 0.44 | 0.80 | 6.12 | 2484 | 366 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U0Z | 26268 | 2024-03-10 | 2022-02-19 | 4.2 | 3.55 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.05 | 11.44 | 0.00 | 2.146 | 12.81 | 0.00 | 1.9 | 98.1 | 0.0 | -2.57 | 0.41 | 0.71 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.05 | 12.25 | 0.00 | 2.215 | 13.20 | 0.00 | 5.2 | 94.8 | 0.0 | -3.35 | 0.71 | 0.39 | 0.73 | — | 2487 | 330 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iY6 | 35815 | 2024-03-10 | 2023-04-04 | 3.13 | 3.04 | 3.19 | 3.1 | 0.003 | 0.55 | 0.0 | 0.04 | 12.05 | 0.00 | 2.168 | 6.91 | 0.00 | 2.3 | 97.7 | 0.0 | 1.84 | 0.42 | 0.61 | 2.08 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.68 | 0.00 | 2.188 | 11.45 | 2.84 | 1.6 | 98.4 | 0.0 | 2.38 | 1.27 | 0.42 | 0.63 | 1.39 | 2495 | 314 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YV1 | 10940 | 2024-03-10 | 2020-04-27 | 3.4 | 4.09 | 3.01 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 12.66 | 0.00 | 2.272 | 8.02 | 1.85 | 1.0 | 99.0 | 0.0 | -4.45 | 0.52 | 0.76 | 1.48 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 14.47 | 0.00 | 2.272 | 7.43 | 0.74 | 1.6 | 98.4 | 0.0 | 1.25 | 0.60 | 0.50 | 0.86 | 1.11 | 2496 | 328 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AFX | 15411 | 2024-03-10 | 2022-07-18 | 4.8 | 5.07 | 4.58 | 5.0 | 0.005 | 0.90 | 0.0 | 0.05 | 16.08 | 0.01 | 2.159 | 17.10 | 1.05 | 6.1 | 93.9 | 0.0 | -0.47 | 0.60 | 0.65 | — | 5.0 | 0.003 | 0.72 | 0.0 | 0.05 | 12.19 | 0.00 | 1.973 | 12.92 | 0.00 | 5.1 | 94.9 | 0.0 | -0.84 | 0.59 | 0.74 | 0.80 | — | 2498 | 321 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EDM | 28036 | 2024-03-10 | 2022-09-05 | 3.6 | 3.02 | 3.55 | 3.0 | 0.002 | 0.44 | 0.0 | 0.04 | 9.61 | 0.00 | 2.271 | 3.02 | 0.00 | 3.2 | 96.8 | 0.0 | 2.82 | 0.64 | 0.66 | 2.16 | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 11.58 | 0.00 | 2.192 | 3.02 | 1.49 | 4.6 | 95.4 | 0.0 | 2.47 | 1.83 | 0.68 | 0.74 | 2.65 | 2509 | 442 | 2 | 0 | 0 | 0 | 0 | logfile |