Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B0K	15786	2023-11-14	2022-09-07	3.0	3.23	3.08	3.2	0.002	0.52	0.0	0.04	9.63	0.00	2.276	7.40	0.50	3.1	96.9	0.0	0.56	0.57	0.83	5.07	3.2	0.003	0.60	0.0	0.04	13.64	0.00	2.240	7.92	2.76	3.5	96.5	0.0	0.93	0.88	0.58	0.85	4.37	3830	492	1	0	0	0	0	logfile
✔	6KWX	0780	2023-11-16	2019-09-09	3.75	4.07	—	4.0	0.011	1.55	1.0	0.17	13.00	0.01	1.627	13.84	1.69	9.0	90.6	0.3	-4.69	0.68	0.72	1.40	4.0	0.004	0.88	0.0	0.05	17.29	0.00	2.112	16.75	0.31	7.3	92.7	0.1	-0.73	1.13	0.68	0.80	1.07	14227	1751	1	0	2	0	0	logfile
✔	7oTi	13060	2023-11-14	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.86	0.0	0.04	14.40	0.00	2.119	20.52	0.00	7.2	92.3	0.5	-1.27	1.77	0.52	0.51	—	9171	1182	1	0	0	0	0	logfile
✔	6JNC	9847	2023-11-13	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.18	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.004	0.61	0.0	0.05	16.03	0.00	2.240	5.61	0.59	3.8	96.2	0.0	-1.17	1.78	0.52	0.88	2.42	3294	419	1	0	1	0	0	logfile
✘	7S9Z	24942	2023-11-14	2021-09-21	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7274	890	1	0	2	0	0	logfile
✘	7S9Y	24941	2023-11-14	2021-09-21	3.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7395	901	1	0	3	0	0	logfile
✔	6JND	9848	2023-11-13	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	3.79	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	3.9	0.004	0.65	0.0	0.05	15.55	0.00	2.233	8.48	0.29	4.3	95.7	0.0	-0.90	1.27	0.48	0.87	2.03	3294	419	1	0	1	0	0	logfile
✔	8GUD	34273	2023-11-14	2022-09-11	2.62	2.98	2.83	3.1	0.008	0.79	0.0	0.05	14.80	0.01	2.116	20.31	0.00	6.0	94.0	0.0	-2.12	0.52	0.56	1.45	3.1	0.003	0.65	0.0	0.04	17.32	0.00	2.168	17.15	1.85	4.4	95.6	0.0	-1.16	1.14	0.49	0.56	1.07	6814	835	1	0	1	0	0	logfile
✔	7PPJ	13581	2023-11-13	2021-09-14	3.44	3.68	3.46	3.7	0.005	0.72	0.0	0.05	14.04	0.00	2.245	15.25	1.20	6.8	92.9	0.3	-3.05	0.72	0.75	2.21	3.7	0.005	0.75	0.0	0.05	15.86	0.00	2.112	14.48	0.51	6.4	93.6	0.0	-0.67	0.61	0.72	0.78	1.98	5175	643	1	0	1	0	0	logfile
✔	8HD7	34671	2023-11-14	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	14.67	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.008	0.83	0.0	0.05	16.67	0.01	1.800	17.97	0.00	0.0	0.0	0.0	—	2.13	0.90	0.82	—	8983	0	1	419	28	0	0	logfile
✔	7T8T	25745	2023-11-17	2021-12-17	3.68	4.13	—	3.9	0.002	0.50	0.0	0.04	13.83	0.00	2.195	4.02	0.00	5.7	94.2	0.1	-0.81	0.80	0.74	1.85	3.9	0.002	0.53	0.0	0.04	14.88	0.00	2.160	7.34	0.00	7.4	92.5	0.2	-1.13	0.45	0.81	0.75	1.97	17434	1086	1	0	1	0	8626	logfile
✔	8ET9	28589	2023-11-14	2022-10-16	3.61	3.97	3.84	3.9	0.005	0.61	0.0	0.04	10.84	0.01	2.058	8.46	0.52	1.8	98.2	0.0	1.38	0.46	0.67	2.05	3.9	0.003	0.58	0.0	0.03	14.29	0.00	1.959	10.28	0.26	3.7	96.3	0.0	0.86	4.56	0.47	0.68	2.12	7685	517	1	0	1	0	3796	logfile
✔	7N98	24252	2023-11-13	2021-06-17	3.5	3.78	3.89	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.003	0.68	0.0	0.04	16.81	0.01	2.245	8.30	1.07	7.6	92.4	0.0	0.09	0.51	0.50	0.81	1.11	3625	473	1	0	0	0	0	logfile
✔	7KTT	23029	2023-11-14	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.003	0.73	0.0	0.04	13.82	0.00	2.116	20.56	0.00	3.3	96.7	0.0	0.00	0.67	0.81	0.76	—	7568	994	1	0	0	0	0	logfile
✘	7RAV	24387	2023-11-13	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.84	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6215	773	1	0	1	0	0	logfile
✔	7R76	24292	2023-11-16	2021-06-24	3.2	3.43	—	3.3	0.008	1.02	1.0	0.06	14.99	0.01	1.995	12.70	0.38	9.0	91.0	0.0	-2.71	0.74	0.79	2.24	3.3	0.004	0.67	0.0	0.04	16.55	0.00	1.971	11.52	0.13	6.5	93.5	0.0	-1.14	0.42	0.74	0.80	2.12	14500	1834	1	0	5	0	0	logfile
✔	7WLL	32587	2023-11-14	2022-01-13	3.6	3.89	—	3.8	0.012	1.19	2.0	0.08	15.09	0.00	2.026	13.97	0.50	7.3	92.6	0.1	-0.42	0.60	0.81	1.99	3.9	0.003	0.82	0.0	0.06	16.22	0.00	2.190	11.34	0.30	5.2	94.8	0.0	0.66	1.18	0.59	0.80	1.18	9540	1135	1	0	21	0	0	logfile
✔	7XD7	33138	2023-11-14	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.67	0.0	0.04	15.11	0.00	1.866	7.88	0.00	0.0	0.0	0.0	—	2.19	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	7ASK	11895	2023-11-15	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.21	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.015	1.14	2.0	0.05	15.52	0.01	1.979	19.61	0.00	18.6	79.9	1.4	-3.48	1.34	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	7KVE	23048	2023-11-15	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.69	0.0	0.05	16.52	0.01	2.162	12.03	0.08	12.6	87.4	0.0	-4.06	1.20	0.75	0.73	2.24	11142	1374	1	0	0	0	0	logfile

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