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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EFH | 28082 | 2024-03-19 | 2022-09-08 | 3.3 | 3.57 | 3.34 | 3.5 | 0.002 | 0.54 | 0.0 | 0.04 | 15.52 | 0.00 | 2.060 | 6.97 | 0.04 | 3.6 | 96.4 | 0.0 | 1.18 | 0.60 | 0.85 | 2.15 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 16.39 | 0.00 | 1.992 | 7.21 | 1.44 | 3.8 | 96.2 | 0.0 | 0.61 | 0.38 | 0.61 | 0.87 | 1.61 | 23228 | 2921 | 14 | 0 | 12 | 0 | 0 | logfile |
✔ | 8CZo | 27100 | 2024-03-22 | 2022-05-25 | 4.3 | 2.75 | 4.13 | 2.2 | 0.004 | 0.75 | 0.0 | 0.04 | 16.53 | 0.00 | 2.084 | 18.96 | 0.00 | 10.9 | 89.1 | 0.0 | -2.32 | 0.50 | 0.66 | — | 1.8 | 0.003 | 0.80 | 0.0 | 0.05 | 14.30 | 0.00 | 2.116 | 14.24 | 0.08 | 8.2 | 91.8 | 0.0 | -0.24 | 1.40 | 0.49 | 0.64 | — | 34518 | 4268 | 44 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Uii | 26546 | 2024-03-16 | 2022-03-29 | 2.6 | 2.91 | 2.65 | 2.9 | 0.003 | 0.61 | 0.0 | 0.05 | 13.58 | 0.00 | 2.234 | 5.76 | 0.00 | 5.1 | 94.9 | 0.0 | -0.77 | 0.60 | 0.87 | 4.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 130944 | 16926 | 93 | 0 | 186 | 186 | 0 | logfile |
✔ | 7ZWH | 14998 | 2024-03-24 | 2022-05-19 | 3.2 | 4.83 | 3.82 | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 17.64 | 0.00 | 1.921 | 12.58 | 0.26 | 15.6 | 84.3 | 0.1 | -2.45 | 0.59 | 0.73 | 0.63 | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 17.03 | 0.00 | 1.859 | 15.35 | 2.82 | 14.1 | 85.8 | 0.1 | -2.43 | 0.60 | 0.61 | 0.81 | 0.96 | 40231 | 2660 | 8 | 0 | 20 | 0 | 19501 | logfile |
✔ | 3JAT | 6352 | 2024-03-24 | 2015-06-20 | 3.5 | 3.68 | — | 3.7 | 0.009 | 1.54 | 12.0 | 0.09 | 16.37 | 0.01 | 1.855 | 1.71 | 0.55 | 3.1 | 96.8 | 0.1 | 0.14 | 0.64 | 0.82 | 2.93 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 17.41 | 0.00 | 1.927 | 7.86 | 1.87 | 2.2 | 97.8 | 0.0 | 0.90 | 0.77 | 0.63 | 0.85 | 2.35 | 40500 | 5124 | 24 | 0 | 24 | 0 | 0 | logfile |
✘ | 7YVU | 34138 | 2024-03-14 | 2022-08-19 | 3.2 | 2.47 | 3.22 | 2.2 | 0.004 | 0.64 | 0.0 | 0.05 | 14.81 | 0.01 | 2.103 | 6.82 | 0.29 | 5.5 | 94.0 | 0.5 | -0.60 | 0.76 | 0.80 | 3.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6456 | 791 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6BJC | 7101 | 2024-03-24 | 2017-11-05 | 3.3 | 3.68 | — | 3.6 | 0.009 | 1.54 | 12.0 | 0.09 | 16.53 | 0.01 | 1.999 | 1.94 | 2.99 | 3.0 | 96.9 | 0.1 | -0.11 | 0.69 | 0.82 | 3.15 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 17.42 | 0.00 | 1.920 | 8.77 | 2.43 | 2.8 | 97.2 | 0.0 | 1.00 | 1.60 | 0.66 | 0.87 | 2.97 | 41136 | 5204 | 26 | 0 | 24 | 0 | 0 | logfile |
✔ | 7RB9 | 24400 | 2024-03-16 | 2021-07-05 | 3.76 | 4.01 | 3.83 | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 14.69 | 0.00 | 2.228 | 9.31 | 0.00 | 3.2 | 96.8 | 0.0 | 0.60 | 0.59 | 0.85 | 1.62 | 3.9 | 0.004 | 0.62 | 0.0 | 0.04 | 16.04 | 0.00 | 1.938 | 9.17 | 1.51 | 4.4 | 95.6 | 0.0 | 0.41 | 2.15 | 0.59 | 0.87 | 1.95 | 14193 | 1786 | 7 | 0 | 6 | 0 | 0 | logfile |
✔ | 7YV8 | 34120 | 2024-03-14 | 2022-08-18 | 2.94 | 2.33 | 2.97 | 2.1 | 0.005 | 0.65 | 0.0 | 0.04 | 15.36 | 0.00 | 2.006 | 3.85 | 0.15 | 6.1 | 93.9 | 0.0 | -0.89 | 0.78 | 0.82 | 4.02 | 2.1 | 0.004 | 0.63 | 0.0 | 0.04 | 15.97 | 0.00 | 2.020 | 5.11 | 1.31 | 6.3 | 93.7 | 0.0 | 0.42 | 0.33 | 0.80 | 0.85 | 3.19 | 6513 | 793 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 7P3R | 13185 | 2024-03-11 | 2021-07-08 | 3.65 | 3.16 | 3.57 | 3.5 | 0.006 | 0.81 | 1.0 | 0.05 | 13.66 | 0.01 | 2.306 | 1.88 | 0.28 | 2.7 | 97.3 | 0.0 | -3.67 | 0.30 | 0.70 | 1.05 | 3.5 | 0.004 | 0.58 | 0.0 | 0.04 | 14.87 | 0.00 | 2.161 | 4.97 | 5.90 | 2.3 | 97.7 | 0.0 | 3.51 | 0.55 | 0.29 | 0.64 | 1.05 | 7738 | 1338 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DoK | 27596 | 2024-03-20 | 2022-07-13 | 3.2 | 3.37 | 3.24 | 3.4 | 0.006 | 0.92 | 7.0 | 0.07 | 17.80 | 0.01 | 2.136 | 12.34 | 0.71 | 3.8 | 96.1 | 0.2 | -0.58 | 0.65 | 0.83 | 3.01 | 3.4 | 0.003 | 0.59 | 0.0 | 0.05 | 14.37 | 0.00 | 2.152 | 9.45 | 2.06 | 4.0 | 96.0 | 0.0 | -0.30 | 0.90 | 0.67 | 0.85 | 2.52 | 25844 | 3091 | 46 | 0 | 122 | 0 | 0 | logfile |
✔ | 7PP6 | 13580 | 2024-03-13 | 2021-09-13 | 3.4 | 4.07 | — | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 12.33 | 0.00 | 1.846 | 6.09 | 0.19 | 9.2 | 90.8 | 0.0 | -2.04 | 0.77 | 0.76 | 1.96 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 11.41 | 0.00 | 1.966 | 7.06 | 0.48 | 8.0 | 92.0 | 0.0 | -1.36 | 0.40 | 0.78 | 0.80 | 1.77 | 66562 | 4592 | 22 | 0 | 28 | 92 | 31702 | logfile |
✔ | 7QV5 | 14167 | 2024-03-10 | 2022-01-19 | 3.0 | 3.03 | 1.88 | 3.0 | 0.010 | 0.44 | 0.0 | 0.06 | 9.44 | 0.00 | 2.689 | 1.08 | 0.00 | 6.2 | 93.8 | 0.0 | -2.64 | 0.46 | 0.86 | 7.89 | 3.1 | 0.002 | 0.36 | 0.0 | 0.06 | 12.41 | 0.00 | 2.576 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | -1.49 | 0.86 | 0.50 | 0.90 | 6.84 | 5562 | 342 | 27 | 0 | 18 | 0 | 2997 | logfile |
✔ | 7NSL | 12570 | 2024-03-11 | 2021-03-08 | 3.1 | 3.25 | 2.92 | 3.2 | 0.012 | 1.84 | 0.0 | 0.08 | 14.48 | 0.01 | 2.367 | 4.69 | 0.00 | 3.7 | 96.3 | 0.0 | -5.51 | 0.54 | 0.77 | 3.94 | 3.2 | 0.006 | 0.70 | 0.0 | 0.04 | 17.65 | 0.00 | 2.121 | 7.46 | 4.11 | 8.3 | 91.7 | 0.0 | -4.17 | 0.95 | 0.55 | 0.81 | 2.94 | 8323 | 595 | 7 | 0 | 0 | 0 | 4053 | logfile |
✔ | 8XD5 | 38266 | 2024-03-10 | 2023-12-10 | 2.75 | 2.93 | 1.08 | 2.9 | 0.005 | 0.73 | 0.0 | 0.05 | 16.88 | 0.00 | 2.447 | 6.29 | 3.80 | 3.4 | 96.6 | 0.0 | 0.89 | 0.49 | 0.90 | 5.03 | 2.8 | 0.003 | 0.50 | 0.0 | 0.04 | 16.49 | 0.00 | 2.242 | 5.09 | 0.88 | 1.7 | 98.3 | 0.0 | 1.68 | 1.00 | 0.48 | 0.93 | 4.85 | 3378 | 419 | 2 | 0 | 2 | 31 | 0 | logfile |
✔ | 7ZTC | 14957 | 2024-03-20 | 2022-05-09 | 3.9 | 3.69 | 3.89 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.85 | 0.01 | 2.123 | 5.33 | 0.00 | 6.9 | 93.1 | 0.0 | -2.20 | 0.71 | 0.82 | 3.21 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 15.03 | 0.00 | 2.188 | 7.34 | 1.21 | 3.0 | 97.0 | 0.0 | -0.34 | 2.52 | 0.71 | 0.83 | 2.06 | 25652 | 2920 | 20 | 0 | 548 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2024-03-20 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | 3.5 | 0.004 | 0.83 | 0.0 | 0.05 | 16.71 | 0.00 | 2.025 | 15.05 | 6.23 | 11.5 | 87.0 | 1.5 | -1.78 | 0.87 | 0.61 | 0.82 | 2.51 | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AD9 | 11721 | 2024-03-16 | 2020-09-14 | 3.5 | 3.60 | 3.40 | 3.5 | 0.017 | 1.61 | 5.0 | 0.08 | 12.96 | 0.01 | 1.765 | 2.27 | 0.30 | 1.8 | 98.2 | 0.0 | -0.26 | 0.68 | 0.81 | 2.87 | 3.5 | 0.004 | 0.65 | 0.0 | 0.05 | 15.34 | 0.00 | 1.946 | 9.42 | 1.95 | 2.6 | 97.4 | 0.0 | 1.22 | 1.83 | 0.69 | 0.85 | 2.36 | 15560 | 1965 | 20 | 0 | 20 | 0 | 0 | logfile |
✔ | 6DPU | 7973 | 2024-03-24 | 2018-06-09 | 3.1 | 3.21 | — | 3.3 | 0.009 | 1.53 | 6.0 | 0.09 | 16.46 | 0.01 | 1.913 | 1.97 | 3.17 | 2.5 | 97.3 | 0.2 | -0.07 | 0.65 | 0.81 | 2.90 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 17.76 | 0.00 | 1.948 | 7.56 | 3.28 | 2.9 | 97.1 | 0.0 | 0.38 | 1.38 | 0.64 | 0.84 | 2.80 | 40650 | 5142 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 8K5D | 36902 | 2024-03-10 | 2023-07-21 | 3.74 | 3.93 | 3.66 | 3.9 | 0.007 | 0.76 | 0.0 | 0.04 | 19.08 | 0.00 | 2.203 | 11.34 | 0.40 | 5.9 | 94.1 | 0.0 | 0.46 | 0.52 | 0.79 | 2.10 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 19.70 | 0.00 | 2.141 | 10.06 | 6.48 | 6.2 | 93.8 | 0.0 | 0.57 | 0.23 | 0.52 | 0.79 | 1.68 | 2345 | 291 | 2 | 0 | 1 | 0 | 0 | logfile |