Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KY5	23068	2023-11-15	2020-12-07	3.98	4.52	—	4.3	0.004	1.09	0.0	0.05	12.78	0.01	2.200	16.72	0.07	6.6	93.4	0.0	-1.06	0.72	0.75	0.32	4.3	0.004	0.87	0.0	0.04	15.20	0.00	1.967	21.02	0.74	7.9	92.1	0.0	-1.15	1.03	0.73	0.78	0.22	12483	1534	6	0	15	0	0	logfile
✔	6QPW	4616	2023-11-14	2019-02-15	3.3	3.57	—	3.6	0.005	0.99	0.0	0.06	16.01	0.01	2.122	5.83	0.14	5.0	95.0	0.0	-3.55	0.70	0.75	3.06	3.6	0.004	0.66	0.0	0.04	17.75	0.00	2.023	13.80	0.41	5.5	94.5	0.0	-0.88	1.35	0.72	0.78	2.22	6784	839	6	0	4	0	0	logfile
✔	7RLU	24547	2023-11-17	2021-07-26	2.9	2.95	2.85	3.0	0.010	1.28	0.0	0.07	13.03	0.01	2.582	0.25	0.31	5.3	94.0	0.7	-3.29	0.73	0.82	4.31	3.0	0.004	0.61	0.0	0.04	16.94	0.00	2.203	3.03	1.40	3.9	96.1	0.0	-0.03	1.64	0.75	0.88	3.04	18188	2332	12	0	8	28	0	logfile
✔	8FoD	29346	2023-11-17	2022-12-30	3.8	3.04	3.70	3.8	0.006	0.83	0.0	0.05	14.42	0.01	2.167	9.55	0.27	2.8	97.1	0.1	0.31	0.69	0.61	1.32	3.8	0.004	0.67	0.0	0.04	15.91	0.00	2.151	11.44	0.27	2.8	97.2	0.0	0.24	2.10	0.70	0.63	1.25	17489	2224	5	0	1	0	0	logfile
✔	7SiM	25144	2023-11-15	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.50	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.55	0.0	0.04	15.84	0.00	2.196	9.00	0.81	1.6	98.4	0.0	0.50	0.93	0.75	0.76	3.23	12826	1564	8	0	28	0	0	logfile
✔	7NJM	12387	2023-11-18	2021-02-17	2.84	2.63	—	2.7	0.003	0.50	0.0	0.04	14.84	0.00	1.935	6.68	0.00	2.7	97.3	0.0	1.41	0.85	0.86	3.49	2.7	0.003	0.50	0.0	0.04	16.33	0.00	1.756	6.60	0.49	2.3	97.6	0.0	1.55	0.90	0.86	0.88	3.33	74611	4932	31	0	11	16	37328	logfile
✔	7YNo	33967	2023-11-13	2022-07-31	2.8	2.92	2.23	3.1	0.008	0.79	0.0	0.05	12.19	0.00	2.252	22.12	0.00	7.3	92.7	0.0	-3.47	0.41	0.77	5.69	3.1	0.004	0.65	0.0	0.05	14.59	0.00	2.237	7.82	1.94	3.1	96.9	0.0	-1.96	0.93	0.42	0.79	4.90	2562	366	8	0	2	0	0	logfile
✔	7PD4	13330	2023-11-14	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.003	0.78	0.0	0.04	13.56	0.00	2.126	18.85	0.00	5.8	94.2	0.0	-0.39	1.28	0.73	0.73	—	6676	842	1	0	0	0	0	logfile
✔	7WUG	32830	2023-11-17	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.19	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.002	0.51	0.0	0.04	15.01	0.00	2.140	5.28	0.22	3.4	96.5	0.0	1.41	0.27	0.78	0.87	1.92	17515	2239	5	0	0	0	0	logfile
✘	7Wo4	32638	2023-11-18	2022-01-20	4.47	3.18	—	3.4	0.003	0.48	0.0	0.04	8.44	0.00	2.234	5.78	3.89	6.1	93.9	0.0	-3.76	0.83	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71208	9096	24	0	90	0	0	logfile
✔	7WHB	32498	2023-11-21	2021-12-30	2.67	3.79	—	3.4	0.003	0.60	0.0	0.05	13.83	0.00	2.193	6.93	0.27	6.8	93.2	0.0	-0.98	0.86	0.82	2.39	3.4	0.003	0.67	0.0	0.04	15.45	0.00	2.158	8.48	1.71	7.1	92.9	0.0	-0.68	0.39	0.84	0.81	2.02	34209	4331	30	0	54	0	0	logfile
✔	7NJS	12417	2023-11-18	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.68	0.00	1.978	4.14	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.005	0.54	0.0	0.04	16.79	0.00	1.675	4.83	1.64	2.6	97.4	0.0	1.82	0.24	0.86	0.90	4.19	74642	4932	31	0	11	16	37346	logfile
✔	5G05	3388	2023-11-15	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.003	0.84	0.0	0.04	17.34	0.00	2.093	16.82	0.41	4.9	94.6	0.5	0.75	3.20	0.89	0.84	1.25	63181	8027	21	0	3	0	0	logfile
✔	6K7H	9932	2023-11-15	2019-06-07	3.22	3.37	3.03	3.3	0.011	1.11	0.0	0.06	15.66	0.01	2.274	5.60	1.13	6.5	93.5	0.0	-3.82	0.65	0.85	3.45	3.3	0.004	0.66	0.0	0.05	16.46	0.00	2.158	8.84	0.26	6.3	93.7	0.0	-0.46	0.95	0.65	0.87	2.89	10577	1312	4	0	6	0	0	logfile
✔	7B5M	12040	2023-11-15	2020-12-05	3.91	4.16	3.79	3.9	0.005	0.87	1.0	0.05	15.58	0.01	2.001	15.24	0.22	10.2	89.8	0.0	-2.61	0.83	0.79	1.50	3.9	0.003	0.67	1.0	0.04	16.87	0.00	2.066	15.68	0.36	8.6	91.4	0.0	-0.99	0.48	0.83	0.79	1.36	12530	1561	10	0	5	0	0	logfile
✔	7NJR	12412	2023-11-18	2021-02-17	2.56	2.54	—	2.4	0.004	0.52	0.0	0.04	14.46	0.00	1.940	5.25	0.00	3.0	96.9	0.1	1.36	0.85	0.87	4.22	2.4	0.003	0.51	0.0	0.04	15.61	0.00	1.742	5.57	0.57	2.9	97.0	0.1	1.66	0.88	0.86	0.89	4.07	74587	4930	31	0	11	16	37321	logfile
✔	5JUY	8178	2023-11-19	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	10.72	0.00	1.447	16.11	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.003	0.66	0.0	0.04	12.04	0.00	2.092	12.45	0.00	5.3	94.6	0.1	-0.61	1.62	0.84	0.69	—	76058	9461	32	0	14	0	0	logfile
✔	8HGH	34739	2023-11-19	2022-11-14	4.16	3.79	4.05	3.7	0.003	0.62	2.0	0.05	12.05	0.01	2.298	3.92	5.83	3.4	96.6	0.0	-1.78	0.76	0.69	—	3.7	0.003	0.64	0.0	0.04	12.54	0.00	2.120	11.31	0.00	3.5	96.5	0.0	-0.79	0.95	0.78	0.72	—	25512	3266	6	0	2	0	0	logfile
✔	6HQE	0252	2023-11-14	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.77	0.0	0.04	11.97	0.01	2.226	19.13	0.00	2.7	97.3	0.0	1.18	1.68	0.64	0.83	—	9360	1196	52	0	0	0	0	logfile
✔	6U9G	20698	2023-11-17	2019-09-08	3.98	4.04	—	4.0	0.005	1.00	0.0	0.06	9.07	0.00	2.228	5.61	0.00	12.3	87.7	0.0	-4.65	0.78	0.80	2.19	4.0	0.003	0.68	0.0	0.05	15.31	0.00	2.100	10.81	0.36	11.6	88.4	0.0	-2.95	2.50	0.79	0.81	1.67	18219	2355	6	0	0	0	0	logfile

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