Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o1K	0590	2023-11-18	2019-02-20	3.13	3.31	3.19	3.3	0.006	1.06	0.0	0.06	11.26	0.01	2.308	4.54	0.17	5.4	94.4	0.2	-3.06	0.68	0.78	3.51	3.3	0.005	0.64	0.0	0.05	15.14	0.00	1.978	8.11	0.50	5.4	94.4	0.2	-0.59	0.92	0.71	0.83	3.04	22707	1317	16	36	0	0	11277	logfile
✔	7XLT	33286	2023-11-13	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	16.27	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	4.3	0.005	0.81	0.0	0.04	14.19	0.01	2.037	32.09	0.00	10.8	89.2	0.0	-2.87	1.77	0.75	0.73	—	4985	431	4	80	0	0	0	logfile
✔	6KFG	9972	2023-11-18	2019-07-07	3.8	3.91	—	3.9	0.007	0.77	0.0	0.05	14.04	0.00	2.148	13.10	0.67	11.5	88.5	0.0	-4.38	0.63	0.82	1.64	3.9	0.005	0.78	0.0	0.04	16.41	0.00	2.166	13.65	1.09	8.9	91.1	0.0	-0.56	1.36	0.63	0.82	1.37	22264	2704	8	0	0	0	0	logfile
✔	7LX5	23566	2023-11-13	2021-03-03	3.44	3.85	3.41	3.9	0.005	0.62	0.0	0.04	10.10	0.00	2.198	4.72	0.00	3.4	96.6	0.0	-0.46	0.71	0.81	3.26	3.9	0.003	0.74	0.0	0.04	15.48	0.00	2.191	10.91	1.08	2.9	97.1	0.0	-0.18	1.43	0.70	0.81	3.17	3485	448	3	0	0	0	0	logfile
✔	7VAD	31837	2023-11-13	2021-08-29	3.41	4.00	—	3.9	0.002	0.59	0.0	0.04	13.01	0.01	2.227	8.39	0.00	7.1	92.9	0.0	0.34	0.64	0.76	1.49	3.9	0.003	0.79	0.0	0.05	16.16	0.00	2.118	14.59	1.08	8.1	91.9	0.0	0.14	0.78	0.62	0.81	2.30	5697	743	3	0	0	0	0	logfile
✔	7XJK	33230	2023-11-14	2022-04-18	3.3	3.56	3.42	3.5	0.005	0.65	0.0	0.04	13.52	0.01	2.172	11.97	0.00	2.7	97.3	0.0	0.32	0.64	0.77	2.84	3.6	0.003	0.58	0.0	0.04	15.69	0.00	2.163	10.24	0.34	3.0	97.0	0.0	0.89	0.35	0.64	0.79	2.31	8570	1139	6	0	0	0	0	logfile
✔	8BNZ	16137	2023-11-16	2022-11-14	3.5	3.50	3.32	3.4	0.018	2.27	15.0	0.12	14.41	0.02	2.180	3.88	0.67	5.0	94.9	0.1	-0.42	0.61	0.58	2.40	3.4	0.004	0.70	0.0	0.04	15.91	0.00	2.137	12.43	0.40	5.3	94.7	0.0	-0.45	1.31	0.71	0.74	2.16	14073	1807	6	0	0	0	0	logfile
✘	6XWR	10636	2023-11-14	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	11.13	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9564	1278	3	0	0	0	0	logfile
✔	6RW9	10035	2023-11-20	2019-06-04	3.27	3.69	—	3.3	0.008	1.09	0.0	0.06	9.91	0.01	2.258	6.01	0.37	6.7	93.2	0.0	-3.60	0.85	0.80	2.61	3.3	0.003	0.68	0.0	0.04	14.32	0.00	2.005	12.23	0.25	5.2	94.8	0.0	0.46	2.14	0.86	0.87	1.67	88700	11425	5	0	0	0	0	logfile
✔	5X8T	6711	2023-11-20	2017-03-03	3.3	3.35	—	3.3	0.004	0.85	0.0	0.04	15.01	0.01	2.145	5.67	0.53	9.9	90.0	0.1	-4.87	0.71	0.78	1.77	3.3	0.003	0.65	0.0	0.04	16.09	0.00	1.991	12.86	0.84	9.3	90.6	0.1	-2.61	1.20	0.74	0.83	1.64	91714	3354	32	3028	0	0	0	logfile
✔	7o0Z	12684	2023-11-14	2021-03-28	3.7	4.56	—	4.1	0.007	1.08	0.0	0.06	15.07	0.01	2.319	5.56	0.44	6.4	93.6	0.0	-5.96	0.74	0.79	1.62	4.1	0.003	0.76	0.0	0.04	15.96	0.00	2.141	14.44	0.00	5.7	94.3	0.0	-0.01	1.19	0.74	0.80	1.31	8730	1142	4	0	0	0	0	logfile
✔	8CG3	16628	2023-11-13	2023-02-03	2.39	2.55	2.34	2.5	0.012	1.69	0.0	0.08	14.77	0.01	2.619	1.73	0.00	2.3	97.7	0.0	-4.90	0.52	0.96	8.23	2.5	0.004	0.84	0.0	0.04	16.20	0.00	2.636	0.69	0.71	1.8	98.2	0.0	-4.73	0.32	0.51	0.94	7.39	3040	445	5	0	0	0	0	logfile
✔	5J8V	8073	2023-11-18	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	0.96	4.0	0.04	9.37	0.00	2.173	6.74	0.32	9.5	88.8	1.7	0.19	0.81	0.75	0.74	—	73616	13812	4	0	0	0	0	logfile
✔	6LNi	0931	2023-11-13	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.43	0.00	2.260	10.36	1.93	11.6	88.4	0.0	-3.97	1.54	0.53	0.87	5.22	4920	600	10	0	0	0	0	logfile
✔	7YL0	33901	2023-11-13	2022-07-25	3.2	3.47	3.15	3.4	0.016	2.51	0.0	0.11	15.56	0.01	2.515	18.86	0.00	5.0	95.0	0.0	-4.14	0.41	0.74	4.76	3.4	0.004	0.75	0.0	0.05	13.70	0.00	2.140	11.23	0.93	10.8	89.2	0.0	-4.55	1.73	0.43	0.76	4.89	2958	396	12	0	0	0	0	logfile
✔	6WiK	21684	2023-11-13	2020-04-10	3.4	4.22	—	3.8	0.012	1.27	0.0	0.08	13.63	0.01	2.078	32.26	2.55	10.5	87.3	2.2	-3.88	0.68	0.67	1.12	3.9	0.004	0.92	0.0	0.04	16.22	0.00	2.135	17.12	0.55	5.1	94.5	0.5	-0.13	1.04	0.71	0.76	1.20	6078	859	3	0	0	0	0	logfile
✔	8G8B	29845	2023-11-16	2023-02-17	4.3	7.82	4.33	3.2	0.004	0.64	0.0	0.04	29.04	0.00	2.061	8.20	1.98	1.8	98.1	0.1	1.94	0.87	0.75	—	3.2	0.005	0.68	0.0	0.04	28.83	0.00	2.167	22.64	0.00	2.8	97.2	0.0	1.33	1.93	0.90	0.81	—	14067	902	11	336	0	0	0	logfile
✘	7o6E	12738	2023-11-21	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35304	4248	48	0	0	1392	0	logfile
✔	7SQT	25394	2023-11-13	2021-11-06	4.0	7.13	4.01	3.5	0.010	0.70	0.0	0.05	15.78	0.01	0.902	2.31	1.25	2.5	97.5	0.0	1.39	0.94	0.84	—	3.4	0.003	0.76	0.0	0.04	15.49	0.00	2.135	11.69	0.18	2.3	97.7	0.0	1.50	3.03	0.93	0.86	—	107136	13752	24	0	0	0	0	logfile
✔	5ZBo	6746	2023-11-20	2018-02-12	4.12	4.69	—	4.8	0.001	0.38	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.003	0.79	1.0	0.04	13.14	0.00	2.131	20.40	0.00	5.8	94.2	0.0	-2.51	2.97	0.74	0.80	—	89100	10860	60	0	0	0	0	logfile

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