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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5ZWo | 6974 | 2024-03-19 | 2018-05-16 | 3.9 | 4.04 | — | 3.8 | 0.014 | 1.42 | 19.0 | 0.08 | 17.27 | 0.01 | 1.462 | 25.40 | 0.63 | 9.1 | 90.0 | 0.9 | -4.00 | 0.65 | 0.62 | 1.56 | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 17.57 | 0.00 | 1.877 | 12.88 | 2.68 | 6.1 | 93.5 | 0.4 | -1.07 | 0.85 | 0.63 | 0.59 | 0.96 | 91261 | 13180 | 61 | 594 | 2 | 0 | 0 | logfile |
✔ | 8HRC | 34967 | 2024-03-16 | 2022-12-15 | 2.58 | 2.69 | 2.60 | 2.6 | 0.002 | 0.48 | 0.0 | 0.04 | 13.75 | 0.00 | 2.237 | 8.80 | 0.01 | 1.9 | 98.1 | 0.0 | 1.74 | 0.79 | 0.84 | 2.77 | 2.6 | 0.003 | 0.56 | 0.0 | 0.04 | 16.08 | 0.00 | 2.117 | 9.99 | 1.68 | 2.9 | 97.1 | 0.0 | 1.65 | 1.19 | 0.81 | 0.88 | 3.01 | 74964 | 9312 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oPF | 17051 | 2024-03-18 | 2023-04-07 | 2.83 | 3.10 | 3.08 | 3.1 | 0.004 | 0.59 | 0.0 | 0.04 | 17.43 | 0.01 | 2.443 | 7.89 | 0.53 | 2.1 | 97.9 | 0.0 | -1.34 | 0.53 | 0.84 | 3.17 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 18.36 | 0.00 | 2.087 | 8.97 | 3.81 | 4.8 | 95.2 | 0.0 | 0.37 | 0.52 | 0.53 | 0.85 | 3.14 | 22401 | 2793 | 19 | 0 | 0 | 0 | 0 | logfile |
✘ | 5ZWM | 6972 | 2024-03-11 | 2018-05-16 | 3.4 | 3.37 | — | 3.3 | 0.007 | 1.15 | 10.0 | 0.06 | 15.21 | 0.01 | 1.786 | 18.95 | 0.72 | 5.9 | 93.5 | 0.6 | -3.22 | 0.51 | 0.43 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111041 | 12858 | 61 | 634 | 8 | 0 | 0 | logfile |
✔ | 7VAW | 31868 | 2024-03-21 | 2021-08-30 | 2.7 | 2.11 | 2.77 | 2.6 | 0.004 | 0.58 | 0.0 | 0.04 | 13.30 | 0.00 | 1.960 | 4.58 | 0.03 | 1.4 | 98.6 | 0.0 | 0.85 | 0.51 | 0.78 | 3.78 | 2.5 | 0.005 | 0.69 | 0.0 | 0.05 | 16.46 | 0.01 | 1.905 | 8.42 | 1.62 | 3.0 | 97.0 | 0.0 | -0.05 | 0.47 | 0.57 | 0.83 | 3.61 | 29553 | 3788 | 16 | 0 | 5 | 0 | 0 | logfile |
✔ | 7MPG | 23933 | 2024-03-18 | 2021-05-04 | 3.4 | 3.98 | — | 4.0 | 0.003 | 0.71 | 0.0 | 0.06 | 13.66 | 0.00 | 1.908 | 15.24 | 0.00 | 6.1 | 93.7 | 0.2 | -1.25 | 0.57 | 0.67 | 1.15 | 3.9 | 0.004 | 0.74 | 0.0 | 0.04 | 16.50 | 0.00 | 2.095 | 15.34 | 3.71 | 5.5 | 94.3 | 0.2 | -0.73 | 0.88 | 0.59 | 0.81 | 1.08 | 20366 | 2640 | 12 | 0 | 3 | 0 | 0 | logfile |
✘ | 5YZG | 6864 | 2024-03-21 | 2017-12-14 | 4.1 | 4.23 | 4.20 | 4.1 | 0.016 | 1.80 | 42.0 | 0.12 | 17.73 | 0.01 | 1.129 | 26.62 | 8.31 | 4.8 | 93.5 | 1.7 | -1.79 | 0.57 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103906 | 15211 | 63 | 408 | 19 | 0 | 0 | logfile |
✔ | 7FDB | 31539 | 2024-03-12 | 2021-07-16 | 4.8 | 5.04 | 4.73 | 8.8 | 0.003 | 0.57 | 0.0 | 0.04 | 13.84 | 0.00 | 1.761 | 12.61 | 0.00 | 7.3 | 92.6 | 0.0 | -0.78 | 0.66 | 0.32 | — | 4.7 | 0.004 | 0.86 | 0.0 | 0.05 | 13.92 | 0.01 | 2.005 | 28.55 | 0.00 | 6.4 | 93.6 | 0.0 | -1.56 | 2.61 | 0.77 | 0.66 | — | 64497 | 8295 | 31 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D21 | 27139 | 2024-03-17 | 2022-05-27 | 3.96 | 4.57 | 3.97 | 4.2 | 0.004 | 0.69 | 0.0 | 0.04 | 17.33 | 0.01 | 2.068 | 5.05 | 0.64 | 6.2 | 93.7 | 0.1 | -1.51 | 0.86 | 0.85 | 2.01 | 4.2 | 0.005 | 1.00 | 1.0 | 0.04 | 16.43 | 0.01 | 2.039 | 11.79 | 3.92 | 4.8 | 95.1 | 0.1 | -0.70 | 0.66 | 0.86 | 0.86 | 1.71 | 17541 | 2181 | 18 | 0 | 30 | 0 | 0 | logfile |
✔ | 8EBX | 28001 | 2024-03-20 | 2022-08-31 | 3.6 | 3.03 | 3.53 | 3.2 | 0.006 | 0.47 | 0.0 | 0.04 | 13.13 | 0.00 | 2.075 | 7.82 | 2.53 | 3.8 | 96.1 | 0.1 | 1.34 | 0.75 | 0.75 | 1.52 | 3.2 | 0.004 | 0.78 | 0.0 | 0.04 | 17.35 | 0.00 | 2.133 | 16.20 | 3.41 | 5.3 | 94.7 | 0.0 | 0.06 | 0.92 | 0.78 | 0.76 | 1.48 | 27533 | 3219 | 17 | 80 | 9 | 0 | 0 | logfile |
✔ | 7AiH | 11796 | 2024-03-21 | 2020-09-27 | 3.6 | 3.68 | — | 3.6 | 0.009 | 1.07 | 56.0 | 0.06 | 20.18 | 0.01 | 1.615 | 24.41 | 1.35 | 14.0 | 85.4 | 0.6 | -5.04 | 0.65 | 0.80 | 2.33 | 3.6 | 0.004 | 0.80 | 0.0 | 0.05 | 20.71 | 0.01 | 2.002 | 19.91 | 4.06 | 10.4 | 89.4 | 0.2 | -2.45 | 2.47 | 0.64 | 0.79 | 1.94 | 143667 | 14496 | 77 | 1087 | 516 | 0 | 0 | logfile |
✔ | 7CAB | 30325 | 2024-03-19 | 2020-06-08 | 3.52 | 3.75 | — | 3.7 | 0.011 | 0.89 | 0.0 | 0.06 | 10.19 | 0.00 | 1.105 | 13.85 | 0.82 | 4.5 | 95.5 | 0.0 | -3.16 | 0.77 | 0.78 | 3.43 | 3.7 | 0.005 | 0.66 | 0.0 | 0.05 | 12.91 | 0.00 | 2.159 | 9.09 | 1.67 | 4.4 | 95.6 | 0.0 | -0.46 | 1.21 | 0.79 | 0.82 | 3.05 | 24978 | 3087 | 21 | 0 | 60 | 0 | 0 | logfile |
✔ | 6PiJ | 20351 | 2024-03-21 | 2019-06-26 | 2.9 | 3.06 | 3.01 | 3.0 | 0.013 | 1.74 | 0.0 | 0.08 | 17.35 | 0.00 | 2.277 | 3.60 | 0.66 | 14.2 | 82.4 | 3.4 | -4.59 | 0.68 | 0.80 | 3.24 | 3.0 | 0.006 | 0.89 | 0.0 | 0.05 | 19.02 | 0.01 | 2.067 | 12.77 | 2.90 | 15.8 | 83.7 | 0.5 | -2.47 | 1.19 | 0.74 | 0.86 | 2.93 | 29671 | 3452 | 13 | 96 | 0 | 0 | 0 | logfile |
✘ | 7LiA | 23365 | 2024-03-11 | 2021-01-26 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6279 | 767 | 5 | 0 | 27 | 0 | 0 | logfile |
✘ | 5GMK | 9525 | 2024-03-16 | 2016-07-14 | 3.4 | 3.52 | — | 3.5 | 0.012 | 1.25 | 16.0 | 0.07 | 16.17 | 0.01 | 1.378 | 19.35 | 2.77 | 7.7 | 91.2 | 1.0 | -3.71 | 0.47 | 0.53 | 1.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75273 | 8026 | 51 | 404 | 981 | 0 | 0 | logfile |
✔ | 7VML | 33935 | 2024-03-14 | 2021-10-09 | 3.3 | 3.44 | 3.36 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 13.79 | 0.00 | 2.158 | 8.25 | 1.39 | 6.1 | 93.9 | 0.0 | -2.64 | 0.70 | 0.77 | 1.66 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.84 | 0.00 | 2.160 | 11.12 | 3.06 | 6.9 | 93.1 | 0.0 | -0.94 | 1.90 | 0.71 | 0.79 | 1.73 | 123564 | 13608 | 12 | 0 | 3000 | 0 | 0 | logfile |
✘ | 5XJC | 6721 | 2024-03-12 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.10 | 17.96 | 0.01 | 1.113 | 24.22 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✔ | 7Li8 | 23363 | 2024-03-10 | 2021-01-26 | 3.9 | 4.37 | — | 4.3 | 0.002 | 0.60 | 0.0 | 0.04 | 10.90 | 0.00 | 2.230 | 6.92 | 0.00 | 5.3 | 94.7 | 0.0 | -3.23 | 0.62 | 0.72 | 1.26 | 4.3 | 0.006 | 1.10 | 1.0 | 0.04 | 14.77 | 0.00 | 2.225 | 12.56 | 4.04 | 7.2 | 92.8 | 0.0 | -1.06 | 2.17 | 0.64 | 0.76 | 1.73 | 6181 | 767 | 5 | 0 | 14 | 0 | 0 | logfile |
✔ | 6W4o | 21535 | 2024-03-21 | 2020-03-11 | 4.8 | 5.05 | 4.72 | 4.7 | 0.004 | 0.78 | 1.0 | 0.05 | 10.85 | 0.00 | 0.834 | 15.75 | 0.91 | 3.0 | 96.7 | 0.2 | -1.53 | 0.83 | 0.70 | — | 4.7 | 0.003 | 0.72 | 0.0 | 0.04 | 12.91 | 0.00 | 2.109 | 17.75 | 0.00 | 2.3 | 97.5 | 0.2 | 0.82 | 1.31 | 0.89 | 0.82 | — | 14475 | 1789 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LY9 | 23589 | 2024-03-18 | 2021-03-06 | 3.91 | 4.69 | 3.95 | 4.1 | 0.005 | 0.72 | 3.0 | 0.05 | 15.51 | 0.00 | 2.003 | 4.11 | 0.76 | 5.8 | 94.2 | 0.0 | -0.23 | 0.76 | 0.75 | 1.10 | 4.1 | 0.003 | 0.62 | 0.0 | 0.04 | 14.48 | 0.00 | 2.193 | 10.20 | 1.71 | 5.7 | 94.2 | 0.0 | -0.51 | 0.69 | 0.82 | 0.85 | 1.44 | 21464 | 2538 | 35 | 0 | 96 | 0 | 0 | logfile |