Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ioA	35613	2023-11-15	2023-03-10	2.63	3.39	2.69	3.2	0.005	0.52	0.0	0.04	10.64	0.00	1.866	9.18	0.53	3.5	96.5	0.0	0.69	0.69	0.89	4.43	3.1	0.002	0.49	0.0	0.04	12.69	0.00	2.040	8.53	0.98	2.4	97.6	0.0	1.43	1.21	0.66	0.87	3.58	12570	1576	4	0	4	0	0	logfile
✔	6UCB	20727	2023-11-21	2019-09-15	3.28	3.46	—	3.5	0.009	0.76	0.0	0.05	13.85	0.01	2.152	5.74	0.00	5.1	94.9	0.0	-3.14	0.64	0.76	2.69	3.4	0.003	0.49	0.0	0.04	14.74	0.00	2.126	9.81	0.00	4.1	95.9	0.0	0.35	0.95	0.66	0.81	2.72	32324	2044	16	0	30	0	15694	logfile
✔	8iP5	35632	2023-11-15	2023-03-14	2.5	3.18	2.56	3.0	0.002	0.43	0.0	0.04	12.76	0.00	2.236	6.28	0.00	1.6	98.4	0.0	3.88	0.74	0.84	3.08	3.0	0.002	0.49	0.0	0.04	15.44	0.00	2.247	6.28	0.35	1.6	98.4	0.0	3.63	0.56	0.72	0.84	3.08	12928	1600	12	0	3	5	0	logfile
✔	7MiR	23862	2023-11-19	2021-04-17	2.5	2.44	—	2.6	0.003	0.48	0.0	0.04	14.23	0.00	1.947	2.91	0.00	3.2	96.8	0.0	1.82	0.72	0.81	3.71	2.6	0.003	0.49	0.0	0.04	15.91	0.00	1.944	3.49	0.70	3.3	96.7	0.0	1.72	1.14	0.73	0.84	3.52	25745	1603	5	0	5	0	12748	logfile
✔	7STN	25434	2023-11-19	2021-11-14	3.19	3.43	—	3.4	0.006	0.78	0.0	0.04	9.95	0.00	2.366	1.05	0.15	2.2	97.8	0.0	2.30	0.66	0.80	3.21	3.4	0.004	0.49	0.0	0.04	12.86	0.00	2.125	3.31	0.15	4.5	95.5	0.1	1.84	1.27	0.64	0.83	2.88	25188	1580	4	0	10	0	12256	logfile
✔	7MiS	23863	2023-11-19	2021-04-17	2.8	2.48	—	2.8	0.003	0.50	0.0	0.04	14.51	0.00	1.917	3.78	0.00	3.8	96.2	0.0	0.91	0.69	0.80	3.35	2.8	0.003	0.49	0.0	0.04	16.11	0.00	1.856	4.05	0.63	3.8	96.2	0.0	1.04	0.35	0.70	0.82	3.05	25893	1616	6	0	6	0	12854	logfile
✔	8D1M	27135	2023-11-16	2022-05-27	3.11	3.41	3.10	3.4	0.006	0.87	0.0	0.06	15.34	0.00	2.396	12.79	1.18	2.7	97.1	0.3	1.27	0.63	0.86	3.50	3.4	0.002	0.49	0.0	0.04	16.53	0.00	2.258	7.99	0.00	1.8	98.2	0.0	1.40	0.92	0.61	0.87	2.41	15590	1880	5	0	0	0	0	logfile
✔	7SK3	25171	2023-11-16	2021-10-19	3.8	4.06	—	4.0	0.005	0.68	0.0	0.07	13.73	0.00	2.143	5.05	0.00	5.0	95.0	0.0	0.15	0.69	0.82	2.20	4.0	0.003	0.49	0.0	0.04	14.81	0.00	2.111	7.69	0.00	4.4	95.6	0.0	0.33	0.36	0.69	0.82	1.67	13294	831	7	0	8	0	6491	logfile
✔	7RHG	24460	2023-11-16	2021-07-17	2.88	2.68	—	2.7	0.003	0.57	0.0	0.04	15.36	0.00	2.196	5.80	0.00	1.7	98.3	0.0	0.74	0.69	0.87	3.86	2.8	0.003	0.49	0.0	0.04	17.08	0.00	2.130	7.79	0.93	1.5	98.5	0.0	2.09	0.33	0.69	0.89	3.75	14753	1790	8	0	4	0	0	logfile
✔	7ZW1	14991	2023-11-15	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	3.9	0.002	0.49	0.0	0.03	17.41	0.00	2.023	8.73	0.16	2.9	97.1	0.0	3.13	0.70	0.65	0.80	1.48	11807	760	3	0	0	0	5883	logfile
✔	8G0L	29657	2023-11-14	2023-01-31	3.39	4.48	3.47	3.9	0.003	0.48	0.0	0.03	16.94	0.00	2.289	5.58	0.10	2.0	98.0	0.0	3.32	0.93	0.90	2.06	3.9	0.002	0.49	0.0	0.03	17.15	0.00	2.293	5.52	0.00	2.1	97.9	0.0	3.32	0.19	0.93	0.90	2.04	8872	1088	3	0	1	0	0	logfile
✔	7T2E	25611	2023-11-13	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	8D67	27219	2023-11-15	2022-06-06	3.3	3.45	2.92	3.5	0.009	0.97	0.0	0.07	13.90	0.01	2.261	6.52	0.36	7.5	92.5	0.0	-1.52	0.68	0.82	3.08	3.5	0.002	0.49	0.0	0.04	15.33	0.00	2.247	4.52	0.22	4.5	95.5	0.0	-0.19	1.17	0.69	0.83	2.67	12570	1540	10	0	0	0	0	logfile
✔	6ZBF	11153	2023-11-17	2020-06-08	3.2	3.99	3.33	3.6	0.010	1.17	0.0	0.08	13.49	0.01	2.469	1.34	0.00	0.8	99.2	0.0	0.79	0.84	0.76	1.37	3.6	0.003	0.49	0.0	0.03	15.23	0.00	1.930	5.09	0.00	1.1	98.9	0.0	4.10	2.84	0.85	0.78	1.36	19459	1156	4	0	0	0	9861	logfile
✔	7T4N	25681	2023-11-13	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	6DWB	8924	2023-11-17	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.49	0.0	0.03	13.59	0.00	2.142	4.35	0.10	3.6	96.4	0.0	4.58	1.15	0.75	0.90	2.83	18360	2340	30	0	0	0	0	logfile
✔	8FHR	29100	2023-11-14	2022-12-14	2.9	3.23	2.98	3.2	0.009	0.82	0.0	0.05	13.15	0.01	2.289	5.32	0.65	4.2	95.8	0.0	-1.64	0.63	0.86	4.29	3.2	0.002	0.49	0.0	0.04	14.75	0.00	2.237	4.23	1.17	2.6	97.4	0.0	0.88	0.92	0.59	0.85	2.93	7306	950	4	0	4	0	0	logfile
✔	8HHC	34760	2023-11-18	2022-11-16	3.3	3.40	3.29	3.3	0.005	0.65	0.0	0.05	13.08	0.00	1.776	5.46	0.04	2.9	97.1	0.0	0.83	0.82	0.88	3.74	3.3	0.002	0.49	0.0	0.04	14.60	0.00	1.953	5.54	0.19	2.3	97.7	0.0	1.28	0.28	0.82	0.89	2.64	24249	3129	12	0	11	0	0	logfile
✔	8i87	35240	2023-11-20	2023-02-03	3.1	3.24	3.12	3.2	0.003	0.53	3.0	0.04	18.56	0.00	2.023	8.76	4.16	4.0	95.7	0.3	-0.18	0.75	0.83	2.73	3.2	0.002	0.49	0.0	0.04	18.17	0.00	2.036	8.22	0.27	4.3	95.5	0.3	0.24	0.24	0.78	0.85	2.80	31066	3519	20	143	4	0	0	logfile
✔	7K0L	22601	2023-11-14	2020-09-04	3.4	3.83	—	3.7	0.004	0.60	0.0	0.04	12.59	0.00	2.141	4.28	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.49	0.0	0.04	13.87	0.00	2.212	5.13	0.12	2.0	98.0	0.0	1.07	1.04	0.75	0.88	2.70	7619	964	4	0	2	0	0	logfile

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