Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NYB	0541	2023-11-14	2019-02-11	4.1	4.15	—	4.0	0.014	1.76	3.0	0.09	14.33	0.00	2.070	6.97	3.66	5.4	94.4	0.2	-3.02	0.75	0.74	—	4.0	0.005	0.80	0.0	0.04	13.88	0.00	1.864	12.75	0.00	4.2	95.8	0.0	0.25	2.59	0.79	0.80	—	8842	1097	6	0	6	0	0	logfile
✔	7XLT	33286	2023-11-13	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	16.27	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	4.3	0.005	0.81	0.0	0.04	14.19	0.01	2.037	32.09	0.00	10.8	89.2	0.0	-2.87	1.77	0.75	0.73	—	4985	431	4	80	0	0	0	logfile
✔	6KFG	9972	2023-11-18	2019-07-07	3.8	3.91	—	3.9	0.007	0.77	0.0	0.05	14.04	0.00	2.148	13.10	0.67	11.5	88.5	0.0	-4.38	0.63	0.82	1.64	3.9	0.005	0.78	0.0	0.04	16.41	0.00	2.166	13.65	1.09	8.9	91.1	0.0	-0.56	1.36	0.63	0.82	1.37	22264	2704	8	0	0	0	0	logfile
✔	7LX5	23566	2023-11-13	2021-03-03	3.44	3.85	3.41	3.9	0.005	0.62	0.0	0.04	10.10	0.00	2.198	4.72	0.00	3.4	96.6	0.0	-0.46	0.71	0.81	3.26	3.9	0.003	0.74	0.0	0.04	15.48	0.00	2.191	10.91	1.08	2.9	97.1	0.0	-0.18	1.43	0.70	0.81	3.17	3485	448	3	0	0	0	0	logfile
✔	6M5V	30094	2023-11-15	2020-03-11	4.5	4.75	—	4.6	0.007	0.86	1.0	0.05	16.07	0.00	2.209	18.28	5.50	9.0	90.9	0.2	-3.04	0.56	0.57	—	4.6	0.003	0.77	0.0	0.04	13.66	0.00	2.149	20.95	0.00	8.3	91.7	0.0	-0.40	2.40	0.63	0.74	—	10549	1359	5	0	5	0	0	logfile
✔	7XJK	33230	2023-11-14	2022-04-18	3.3	3.56	3.42	3.5	0.005	0.65	0.0	0.04	13.52	0.01	2.172	11.97	0.00	2.7	97.3	0.0	0.32	0.64	0.77	2.84	3.6	0.003	0.58	0.0	0.04	15.69	0.00	2.163	10.24	0.34	3.0	97.0	0.0	0.89	0.35	0.64	0.79	2.31	8570	1139	6	0	0	0	0	logfile
✔	7MTD	23983	2023-11-17	2021-05-13	3.5	2.75	3.50	3.5	0.007	0.89	0.0	0.06	9.53	0.01	2.308	2.25	0.15	6.5	93.5	0.0	-4.05	0.71	0.81	2.91	3.4	0.003	0.62	0.0	0.04	14.06	0.00	2.203	5.04	0.10	4.6	95.3	0.1	-0.64	1.12	0.72	0.81	2.52	18833	2348	20	0	41	0	0	logfile
✔	7X2D	32965	2023-11-15	2022-02-25	3.3	3.43	—	3.5	0.005	0.84	1.0	0.05	14.43	0.01	1.860	12.03	0.57	3.0	97.0	0.0	-0.46	0.64	0.79	2.37	3.5	0.002	0.57	0.0	0.04	16.00	0.00	2.106	9.39	0.45	2.0	98.0	0.0	1.17	1.18	0.63	0.82	2.16	8203	1032	6	0	2	0	0	logfile
✔	7P16	13157	2023-11-13	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	15.07	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.67	0.0	0.04	14.47	0.00	2.185	11.13	0.00	3.7	96.3	0.0	0.83	1.45	0.64	0.76	—	3621	444	3	0	1	0	0	logfile
✔	8AYN	15717	2023-11-16	2022-09-02	2.8	2.38	2.63	2.8	0.013	1.23	0.0	0.05	15.14	0.00	2.003	5.50	0.00	3.9	96.1	0.0	0.76	0.68	0.80	3.90	2.8	0.006	0.64	0.0	0.04	16.36	0.00	2.151	6.65	1.91	2.8	97.2	0.0	0.58	1.17	0.64	0.81	3.62	15748	1998	12	0	28	0	0	logfile
✔	8AA2	15291	2023-11-22	2022-06-29	3.1	3.39	2.97	3.2	0.012	0.60	0.0	0.09	13.22	0.00	1.958	7.56	0.00	3.3	96.6	0.1	0.59	0.84	0.86	3.61	3.2	0.003	0.54	0.0	0.04	14.48	0.00	1.885	7.11	0.19	3.3	96.7	0.1	-0.19	1.56	0.85	0.90	3.88	35942	4472	19	0	49	0	0	logfile
✔	7o0Z	12684	2023-11-14	2021-03-28	3.7	4.56	—	4.1	0.007	1.08	0.0	0.06	15.07	0.01	2.319	5.56	0.44	6.4	93.6	0.0	-5.96	0.74	0.79	1.62	4.1	0.003	0.76	0.0	0.04	15.96	0.00	2.141	14.44	0.00	5.7	94.3	0.0	-0.01	1.19	0.74	0.80	1.31	8730	1142	4	0	0	0	0	logfile
✔	7A4N	11639	2023-11-18	2020-08-20	2.75	2.48	—	2.7	0.007	0.81	1.0	0.10	12.87	0.00	2.003	5.21	0.20	3.9	96.1	0.0	-2.00	0.77	0.81	3.64	2.6	0.005	0.63	0.0	0.05	14.98	0.00	2.072	6.95	1.51	4.1	95.9	0.0	-0.51	0.55	0.78	0.87	3.32	22809	2889	9	0	21	0	0	logfile
✔	7RAZ	24390	2023-11-15	2021-07-05	3.4	4.46	3.18	3.9	0.004	0.87	0.0	0.04	13.50	0.00	2.201	11.69	0.00	2.3	97.7	0.0	1.13	0.79	0.85	2.19	3.9	0.004	0.72	0.0	0.04	14.04	0.00	2.113	14.03	0.45	2.5	97.5	0.0	1.10	0.40	0.79	0.87	2.20	10472	1330	14	0	7	0	0	logfile
✔	7F4i	31453	2023-11-14	2021-06-18	3.1	3.87	—	3.5	0.009	1.21	0.0	0.06	11.96	0.01	2.169	1.75	0.00	4.3	95.7	0.0	-0.38	0.67	0.82	3.32	3.5	0.004	0.71	0.0	0.04	14.94	0.00	2.222	10.12	0.47	2.2	97.8	0.0	1.37	2.50	0.66	0.83	2.24	8031	1030	7	0	1	0	0	logfile
✔	6WiK	21684	2023-11-13	2020-04-10	3.4	4.22	—	3.8	0.012	1.27	0.0	0.08	13.63	0.01	2.078	32.26	2.55	10.5	87.3	2.2	-3.88	0.68	0.67	1.12	3.9	0.004	0.92	0.0	0.04	16.22	0.00	2.135	17.12	0.55	5.1	94.5	0.5	-0.13	1.04	0.71	0.76	1.20	6078	859	3	0	0	0	0	logfile
✔	7UiW	26555	2023-11-18	2022-03-29	3.33	3.27	—	3.3	0.004	0.77	0.0	0.04	13.74	0.00	2.005	2.75	0.02	0.3	99.7	0.0	-0.17	0.59	0.75	2.41	3.3	0.003	0.55	0.0	0.04	16.63	0.00	1.810	9.34	0.47	2.6	97.4	0.0	0.28	0.83	0.61	0.82	2.57	75891	4792	19	0	17	0	38115	logfile
✔	6TGA	10496	2023-11-19	2019-11-15	3.26	3.35	—	3.3	0.010	1.17	2.0	0.05	14.55	0.00	1.909	8.15	1.13	5.5	94.4	0.2	-3.82	0.72	0.77	3.13	3.3	0.005	0.73	0.0	0.05	16.19	0.01	2.153	10.32	0.47	6.4	93.6	0.1	-1.28	1.25	0.76	0.84	3.54	25324	3318	14	0	24	0	0	logfile
✔	8E8o	27945	2023-11-17	2022-08-25	2.77	3.96	2.79	3.4	0.007	0.75	0.0	0.05	13.98	0.00	2.148	9.75	0.00	5.6	94.4	0.0	-2.82	0.86	0.79	3.49	3.4	0.003	0.66	0.0	0.04	14.66	0.00	2.221	8.34	0.21	4.7	95.3	0.0	0.13	1.55	0.91	0.87	2.50	17704	2224	8	0	4	0	0	logfile
✔	8BNZ	16137	2023-11-16	2022-11-14	3.5	3.50	3.32	3.4	0.018	2.27	15.0	0.12	14.41	0.02	2.180	3.88	0.67	5.0	94.9	0.1	-0.42	0.61	0.58	2.40	3.4	0.004	0.70	0.0	0.04	15.91	0.00	2.137	12.43	0.40	5.3	94.7	0.0	-0.45	1.31	0.71	0.74	2.16	14073	1807	6	0	0	0	0	logfile

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