Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VWH	21416	2023-11-14	2020-02-19	4.26	4.65	—	4.3	0.006	1.06	0.0	0.06	13.74	0.01	2.223	10.17	0.82	6.7	92.5	0.8	-1.73	0.69	0.57	—	4.4	0.003	0.67	0.0	0.04	12.46	0.00	1.934	10.88	0.00	9.6	90.2	0.2	-1.61	1.52	0.71	0.60	—	8461	539	2	0	0	0	4139	logfile
✔	7X13	32933	2023-11-18	2022-02-23	3.7	3.38	—	3.3	0.002	0.51	0.0	0.04	14.42	0.00	2.152	8.27	0.04	1.7	98.3	0.0	2.42	0.50	0.55	1.11	3.3	0.003	0.63	0.0	0.04	16.22	0.00	2.101	12.23	0.61	3.2	96.8	0.0	1.37	1.02	0.52	0.60	1.32	21248	2668	12	0	0	0	0	logfile
✔	7Q3U	13795	2023-11-13	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.004	0.92	0.0	0.04	18.42	0.01	2.192	28.03	0.00	14.8	85.2	0.0	-6.03	2.22	0.34	0.60	2.69	2355	355	5	0	0	0	0	logfile
✔	6QX9	4665	2023-11-20	2019-03-07	3.28	3.33	—	3.3	0.011	1.31	35.0	0.08	16.06	0.01	0.530	12.89	2.29	5.5	94.1	0.3	-3.26	0.46	0.51	1.65	3.3	0.004	0.69	0.0	0.04	16.70	0.00	1.873	15.06	0.35	4.8	95.1	0.1	-0.28	0.86	0.50	0.60	1.59	137494	15560	77	565	36	0	0	logfile
✔	7KXY	23067	2023-11-14	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.003	0.82	0.0	0.05	14.45	0.01	2.088	21.63	0.10	15.0	84.9	0.1	-4.55	1.26	0.63	0.60	—	9510	1181	2	0	0	0	0	logfile
✔	6i1X	0326	2023-11-14	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile
✔	6BGJ	7096	2023-11-14	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.55	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.004	0.90	0.0	0.05	14.15	0.00	2.083	19.86	0.14	13.1	86.6	0.3	-1.19	1.40	0.49	0.60	1.38	7418	980	4	0	2	0	0	logfile
✔	8oMA	16972	2023-11-15	2023-03-31	3.29	2.61	3.29	3.2	0.008	1.30	1.0	0.09	19.39	0.01	1.878	28.14	2.97	7.9	92.1	0.0	-1.51	0.68	0.70	0.46	2.0	0.003	0.78	0.0	0.04	19.93	0.00	1.955	23.58	0.59	6.2	93.8	0.0	-0.55	1.94	0.63	0.60	0.44	11379	1337	6	34	3	0	0	logfile
✔	7KBB	22788	2023-11-14	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.003	0.72	0.0	0.04	14.59	0.01	2.110	14.66	0.00	6.7	93.3	0.0	-0.71	0.66	0.58	0.60	—	6422	812	7	0	0	0	0	logfile
✔	7BWA	30231	2023-11-15	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	41.05	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.003	0.74	0.0	0.05	14.14	0.00	2.136	19.42	0.00	7.9	92.1	0.0	-2.97	1.69	0.79	0.60	—	11670	1444	4	0	0	0	0	logfile
✔	8DGA	27420	2023-11-16	2022-06-23	3.73	4.05	3.82	3.9	0.007	1.17	0.0	0.06	13.53	0.01	2.210	8.33	0.12	7.0	92.7	0.3	-2.35	0.70	0.60	0.89	3.8	0.003	0.67	0.0	0.04	15.36	0.00	2.141	16.26	0.50	6.2	93.4	0.3	0.06	0.57	0.70	0.60	0.84	15473	1811	5	41	1	0	0	logfile
✔	7DA4	30622	2023-11-13	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.94	0.0	0.04	10.84	0.00	2.229	17.17	0.00	21.7	78.3	0.0	-5.61	3.07	0.36	0.60	—	507	66	3	0	0	0	0	logfile
✔	6VHA	21201	2023-11-13	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.003	0.74	0.0	0.05	13.40	0.00	2.336	12.82	0.00	9.8	90.2	0.0	-4.37	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile
✔	8GWG	34312	2023-11-18	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.4	0.003	0.80	0.0	0.04	17.21	0.00	2.091	18.31	0.61	7.5	92.2	0.3	-1.79	1.70	0.76	0.60	0.23	21955	2668	13	52	9	1	0	logfile
✔	5ZWo	6974	2023-11-20	2018-05-16	3.9	4.04	—	3.8	0.014	1.42	19.0	0.08	14.28	0.01	1.462	25.40	0.63	9.1	90.0	0.9	-4.00	0.65	0.62	1.56	3.7	0.008	0.93	0.0	0.05	15.45	0.01	1.688	19.85	0.80	10.7	88.8	0.5	-2.33	0.97	0.63	0.60	1.08	91261	13180	61	594	2	0	0	logfile
✔	7ZNN	14812	2023-11-16	2022-04-21	4.8	7.93	6.02	4.7	0.003	0.80	0.0	0.04	14.16	0.00	2.316	6.53	0.93	7.2	92.6	0.2	-4.19	0.87	0.70	—	4.7	0.005	0.79	0.0	0.04	13.49	0.00	2.057	36.36	0.00	6.5	93.3	0.1	-1.84	2.05	0.87	0.60	—	14606	1814	4	0	1	0	0	logfile
✔	8ETH	24409	2023-11-19	2022-10-17	3.8	2.97	—	2.9	0.006	0.62	0.0	0.04	16.49	0.01	2.088	10.10	0.53	5.2	94.6	0.2	-0.47	0.63	0.61	2.70	2.9	0.004	0.60	0.0	0.04	16.57	0.00	2.051	10.71	0.53	4.6	95.2	0.2	0.23	1.11	0.63	0.61	2.42	77577	6161	42	1508	1	0	0	logfile
✔	7V4L	31715	2023-11-14	2021-08-13	3.4	3.80	—	3.8	0.005	0.82	1.0	0.06	15.20	0.01	2.102	18.13	3.71	8.8	90.6	0.5	-2.60	0.55	0.55	1.34	3.8	0.003	0.72	0.0	0.05	16.09	0.01	2.154	17.48	0.49	6.7	93.2	0.1	-2.54	0.75	0.58	0.61	1.26	9345	1190	5	0	0	0	0	logfile
✔	6XMX	22265	2023-11-16	2020-07-01	3.7	3.86	3.66	3.8	0.012	1.12	0.0	0.06	16.36	0.01	2.154	7.37	0.89	1.7	98.3	0.0	-1.34	0.61	0.54	1.48	3.8	0.003	0.59	0.0	0.04	17.24	0.00	1.936	14.13	0.22	2.7	97.3	0.0	1.87	1.31	0.63	0.61	0.82	16014	976	16	0	8	0	7942	logfile
✔	8HHX	34806	2023-11-19	2022-11-17	3.62	3.70	3.71	3.6	0.004	0.64	0.0	0.05	13.16	0.01	2.114	12.98	0.17	5.7	94.1	0.1	-1.21	0.47	0.60	0.93	3.6	0.003	0.70	0.0	0.05	15.54	0.00	2.050	15.02	0.27	7.2	92.8	0.0	-1.84	0.49	0.46	0.61	0.93	27435	3477	17	0	35	0	0	logfile

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