Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T6D	25713	2023-11-14	2021-12-13	3.9	4.12	3.81	4.1	0.006	0.84	2.0	0.05	13.11	0.02	2.172	12.57	1.42	2.9	97.0	0.1	1.14	0.54	0.61	0.72	4.1	0.002	0.60	0.0	0.03	14.45	0.00	2.225	8.13	0.71	2.0	98.0	0.0	2.93	0.70	0.61	0.69	0.72	7566	1181	6	0	2	0	0	logfile
✔	7NG9	12310	2023-11-17	2021-02-08	3.3	3.48	3.33	3.5	0.007	0.48	0.0	0.04	14.72	0.00	2.250	4.23	0.85	3.6	96.4	0.0	-0.87	0.62	0.80	4.09	3.5	0.005	0.54	0.0	0.03	15.92	0.00	2.124	7.07	0.28	3.4	96.6	0.0	1.85	2.59	0.68	0.86	3.50	19368	1263	3	0	0	0	9615	logfile
✔	5V6P	8637	2023-11-14	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.63	0.0	0.03	12.99	0.00	2.171	12.95	0.00	3.0	97.0	0.0	2.68	1.65	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	8G8E	29846	2023-11-13	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.65	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.004	0.64	0.0	0.03	28.58	0.00	2.184	17.94	0.00	3.7	96.3	0.0	-0.13	1.83	0.91	0.83	—	2464	140	3	64	0	0	0	logfile
✔	7F6V	31482	2023-11-13	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	14.14	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.65	0.0	0.03	17.58	0.00	2.249	9.40	0.18	4.4	95.6	0.0	4.28	0.84	0.60	0.77	0.75	5314	626	4	0	2	0	0	logfile
✔	7UTN	26782	2023-11-14	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.002	0.52	0.0	0.03	18.32	0.00	2.194	7.85	0.58	1.5	98.5	0.0	1.03	0.32	0.82	0.84	3.64	8003	397	4	228	0	0	0	logfile
✔	7o0W	12681	2023-11-14	2021-03-27	2.47	2.42	—	2.3	0.018	4.34	0.0	0.06	24.63	0.01	2.010	1.98	0.28	1.4	98.6	0.0	1.25	0.82	0.86	5.37	2.3	0.003	1.68	0.0	0.03	21.17	0.00	1.957	7.86	0.98	0.9	99.1	0.0	3.96	1.12	0.83	0.88	3.91	56476	5076	236	0	320	406	0	logfile
✔	6ZBD	11151	2023-11-17	2020-06-08	3.21	3.97	3.37	3.6	0.010	1.19	0.0	0.08	13.68	0.01	2.466	0.97	0.00	0.9	99.1	0.0	0.87	0.85	0.78	1.78	3.6	0.002	0.50	0.0	0.03	15.08	0.00	2.000	5.02	0.27	1.5	98.5	0.0	3.93	2.62	0.86	0.80	1.77	19519	1159	4	0	0	0	9896	logfile
✔	7CR1	30444	2023-11-14	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.53	0.0	0.03	16.48	0.00	2.133	7.37	0.60	2.2	97.8	0.0	2.94	1.18	0.58	0.81	1.83	8220	1000	8	0	4	0	0	logfile
✔	6ZBH	11155	2023-11-17	2020-06-08	3.6	4.44	3.80	3.9	0.010	1.17	0.0	0.08	13.65	0.01	2.465	0.97	0.00	1.0	99.0	0.0	0.82	0.86	0.76	1.40	3.9	0.002	0.49	0.0	0.03	15.13	0.00	2.128	5.53	0.18	1.1	98.9	0.0	4.23	1.08	0.88	0.81	1.30	19523	1159	4	0	0	0	9896	logfile
✔	6ZBE	11152	2023-11-17	2020-06-08	3.3	4.04	3.36	3.7	0.010	1.16	0.0	0.08	13.39	0.01	2.470	1.13	0.00	0.8	99.2	0.0	0.61	0.84	0.76	1.69	3.7	0.004	0.53	0.0	0.03	15.47	0.00	2.081	5.89	0.09	1.9	98.1	0.0	3.65	1.52	0.85	0.79	1.32	19534	1160	4	0	0	0	9902	logfile
✔	8iXJ	35793	2023-11-16	2023-04-01	3.1	3.03	3.07	3.1	0.012	1.45	0.0	0.09	10.47	0.00	2.412	3.04	0.00	0.0	100.0	0.0	3.48	0.67	0.86	2.90	3.1	0.003	0.33	0.0	0.03	13.96	0.00	2.249	2.57	0.29	0.0	100.0	0.0	7.00	1.01	0.66	0.86	1.03	13760	1840	40	0	0	0	0	logfile
✔	6K43	9913	2023-11-21	2019-05-23	3.7	4.12	—	4.0	0.007	0.72	0.0	0.04	15.85	0.00	1.266	17.54	0.12	6.9	93.1	0.0	-2.02	0.75	0.82	1.49	4.1	0.004	0.72	0.0	0.03	18.20	0.00	2.172	5.80	0.36	3.5	96.5	0.0	4.18	0.82	0.76	0.81	1.59	31808	3840	48	0	36	0	0	logfile
✔	6JYL	9718	2023-11-16	2019-04-26	3.37	4.00	—	3.4	0.008	0.85	0.0	0.05	24.45	0.01	2.086	2.75	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.4	0.003	0.58	0.0	0.03	24.47	0.00	1.427	7.57	0.19	4.2	95.8	0.0	1.01	0.56	0.90	0.88	1.98	16136	1265	11	292	3	0	0	logfile
✔	6PX1	20516	2023-11-15	2019-07-24	3.3	3.48	—	3.4	0.006	0.87	0.0	0.05	28.73	0.01	2.228	2.28	0.00	1.9	98.1	0.0	-2.98	0.79	0.83	3.70	3.4	0.003	0.57	0.0	0.03	28.68	0.00	2.144	8.93	0.00	1.4	98.6	0.0	2.54	0.45	0.79	0.84	2.62	11937	752	10	290	0	0	0	logfile
✔	7K78	22696	2023-11-16	2020-09-22	3.1	3.20	—	3.2	0.004	0.69	0.0	0.04	27.09	0.01	2.149	8.43	0.20	2.7	97.3	0.0	0.24	0.73	0.85	2.54	3.2	0.003	0.58	0.0	0.03	26.82	0.00	2.175	7.40	0.59	2.9	97.1	0.0	1.60	0.31	0.71	0.86	2.40	14125	1198	12	232	0	0	0	logfile
✔	7K5X	22683	2023-11-17	2020-09-17	2.93	3.28	—	3.2	0.004	0.60	0.0	0.04	26.42	0.00	2.211	5.79	0.09	2.2	97.8	0.0	1.31	0.76	0.82	3.15	3.1	0.003	0.58	0.0	0.03	27.44	0.00	2.220	6.96	1.64	2.2	97.8	0.0	1.90	1.40	0.79	0.86	2.34	18291	1296	13	394	0	0	0	logfile
✔	5A6E	3062	2023-11-15	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	6UPH	20839	2023-11-15	2019-10-17	2.7	3.01	2.85	3.0	0.007	0.67	0.0	0.04	26.16	0.00	2.216	4.33	0.00	1.8	98.2	0.0	-5.67	0.70	0.87	4.13	3.0	0.003	0.60	0.0	0.03	27.60	0.00	2.121	4.27	1.45	0.8	99.2	0.0	1.21	0.35	0.66	0.87	2.32	10677	732	10	238	0	0	0	logfile
✔	6oFF	20044	2023-11-15	2019-03-29	3.2	3.32	—	3.3	0.009	0.83	0.0	0.04	10.88	0.01	2.147	4.73	0.00	3.9	96.1	0.0	-5.21	0.59	0.85	4.52	3.3	0.002	0.53	0.0	0.03	15.58	0.00	2.230	6.89	0.25	3.8	96.2	0.0	4.04	1.22	0.62	0.88	3.84	11016	1404	18	0	0	0	0	logfile

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