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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7QEQ | 13937 | 2024-03-17 | 2021-12-03 | 1.9 | 2.38 | 1.89 | 2.1 | 0.005 | 0.87 | 0.0 | 0.04 | 12.39 | 0.00 | 2.181 | 2.19 | 1.18 | 1.1 | 98.9 | 0.0 | 1.60 | 0.82 | 0.90 | 4.56 | 2.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.10 | 0.00 | 2.219 | 2.71 | 1.13 | 1.6 | 98.4 | 0.0 | 3.96 | 0.49 | 0.82 | 0.92 | 4.10 | 19313 | 2268 | 36 | 0 | 60 | 305 | 0 | logfile |
✔ | 7Z9C | 14570 | 2024-03-21 | 2022-03-21 | 3.06 | 3.36 | 3.11 | 3.3 | 0.004 | 0.61 | 0.0 | 0.04 | 14.02 | 0.01 | 1.887 | 1.59 | 0.00 | 6.0 | 94.0 | 0.0 | 0.45 | 0.73 | 0.85 | 3.67 | 3.3 | 0.003 | 0.49 | 0.0 | 0.04 | 16.15 | 0.00 | 1.792 | 2.71 | 0.84 | 5.8 | 94.1 | 0.1 | 0.62 | 0.59 | 0.73 | 0.88 | 3.27 | 31325 | 1838 | 15 | 64 | 3 | 10 | 15359 | logfile |
✔ | 7KoD | 22972 | 2024-03-14 | 2020-11-08 | 1.655 | 2.30 | — | 1.9 | 0.001 | 0.33 | 0.0 | 0.03 | 8.49 | 0.00 | 2.288 | 0.80 | 0.00 | 1.1 | 98.9 | 0.0 | 6.14 | 0.91 | 0.91 | 8.16 | 2.0 | 0.005 | 0.50 | 0.0 | 0.04 | 13.83 | 0.00 | 1.855 | 2.71 | 0.25 | 0.6 | 99.4 | 0.0 | 5.20 | 0.58 | 0.87 | 0.93 | 8.06 | 68186 | 4128 | 48 | 0 | 0 | 1727 | 32643 | logfile |
✔ | 7ABH | 11696 | 2024-03-17 | 2020-09-07 | 4.5 | 4.60 | — | 4.4 | 0.003 | 0.63 | 0.0 | 0.05 | 12.55 | 0.00 | 1.529 | 2.09 | 0.00 | 6.0 | 93.7 | 0.2 | -2.78 | 0.75 | 0.77 | — | 4.4 | 0.002 | 0.62 | 0.0 | 0.04 | 12.68 | 0.00 | 2.210 | 2.72 | 0.00 | 6.5 | 93.5 | 0.0 | -0.12 | 1.29 | 0.77 | 0.80 | — | 17922 | 3288 | 16 | 65 | 0 | 0 | 0 | logfile |
✔ | 8SC1 | 40334 | 2024-03-10 | 2023-04-04 | 2.92 | 3.14 | 2.89 | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 10.47 | 0.01 | 2.266 | 1.15 | 0.00 | 2.5 | 97.5 | 0.0 | -0.78 | 0.58 | 0.81 | 2.42 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 13.73 | 0.00 | 2.195 | 2.73 | 1.89 | 1.4 | 98.6 | 0.0 | 1.94 | 1.99 | 0.61 | 0.83 | 1.25 | 3447 | 446 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XS7 | 33423 | 2024-03-15 | 2022-05-13 | 3.2 | 3.43 | 3.32 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 14.80 | 0.00 | 1.946 | 3.69 | 0.16 | 4.2 | 95.6 | 0.3 | -2.73 | 0.69 | 0.86 | 3.61 | 3.4 | 0.002 | 0.53 | 0.0 | 0.04 | 15.53 | 0.00 | 2.328 | 2.73 | 1.32 | 4.9 | 95.0 | 0.1 | 0.18 | 0.98 | 0.67 | 0.87 | 2.99 | 12270 | 1458 | 4 | 0 | 42 | 0 | 0 | logfile |
✔ | 7MQE | 23944 | 2024-03-19 | 2021-05-05 | 3.69 | 3.22 | 3.67 | 3.5 | 0.008 | 0.84 | 0.0 | 0.06 | 14.66 | 0.00 | 2.308 | 1.58 | 0.77 | 1.7 | 98.3 | 0.0 | 0.67 | 0.75 | 0.81 | 3.89 | 3.5 | 0.003 | 0.51 | 0.0 | 0.04 | 15.36 | 0.00 | 2.271 | 2.73 | 0.77 | 2.9 | 97.1 | 0.0 | 1.45 | 0.41 | 0.79 | 0.83 | 3.44 | 12163 | 1629 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 6oVH | 20212 | 2024-03-15 | 2019-05-07 | 2.6 | 2.81 | 2.71 | 2.8 | 0.014 | 1.10 | 0.0 | 0.04 | 17.48 | 0.01 | 1.203 | 1.15 | 4.55 | 1.0 | 99.0 | 0.0 | -6.34 | 0.75 | 0.87 | 4.63 | 2.8 | 0.003 | 0.78 | 0.0 | 0.04 | 18.70 | 0.00 | 2.009 | 2.73 | 0.95 | 1.0 | 99.0 | 0.0 | 1.67 | 0.97 | 0.77 | 0.89 | 3.79 | 10895 | 1272 | 36 | 0 | 68 | 171 | 0 | logfile |
✔ | 8DMY | 27549 | 2024-03-15 | 2022-07-09 | 3.07 | 3.43 | 3.15 | 3.4 | 0.004 | 0.62 | 0.0 | 0.05 | 18.68 | 0.00 | 2.379 | 4.32 | 0.63 | 3.3 | 96.7 | 0.0 | -1.24 | 0.57 | 0.84 | 2.69 | 3.4 | 0.003 | 0.63 | 0.0 | 0.05 | 17.36 | 0.00 | 2.231 | 2.74 | 2.85 | 4.3 | 95.7 | 0.0 | -0.60 | 1.01 | 0.64 | 0.89 | 2.37 | 11796 | 1494 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7RXA | 24726 | 2024-03-11 | 2021-08-22 | 3.08 | 3.22 | — | 3.3 | 0.006 | 1.11 | 0.0 | 0.05 | 17.17 | 0.01 | 2.381 | 1.32 | 0.00 | 5.4 | 94.6 | 0.0 | -4.42 | 0.67 | 0.84 | 2.99 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 14.81 | 0.00 | 2.257 | 2.75 | 1.76 | 4.7 | 95.3 | 0.0 | 0.70 | 0.30 | 0.67 | 0.85 | 3.04 | 8694 | 1156 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 8PHo | 17669 | 2024-03-22 | 2023-06-20 | 2.34 | 2.07 | 2.33 | 2.2 | 0.005 | 0.77 | 0.0 | 0.06 | 13.64 | 0.01 | 2.128 | 1.78 | 0.00 | 1.0 | 99.0 | 0.0 | -0.02 | 0.73 | 0.85 | 3.99 | 2.2 | 0.003 | 0.51 | 0.0 | 0.04 | 17.01 | 0.00 | 2.219 | 2.75 | 1.18 | 0.6 | 99.4 | 0.0 | 1.27 | 0.49 | 0.72 | 0.85 | 4.55 | 32172 | 3804 | 12 | 0 | 0 | 720 | 0 | logfile |
✔ | 7RSQ | 24677 | 2024-03-10 | 2021-08-11 | 3.8 | 4.03 | 3.73 | 4.1 | 0.008 | 0.80 | 0.0 | 0.05 | 12.74 | 0.00 | 2.360 | 4.01 | 2.88 | 3.0 | 97.0 | 0.0 | -0.64 | 0.63 | 0.68 | 1.39 | 4.1 | 0.003 | 0.52 | 0.0 | 0.03 | 15.34 | 0.00 | 2.233 | 2.76 | 0.96 | 2.6 | 97.4 | 0.0 | 2.14 | 1.75 | 0.64 | 0.71 | 1.77 | 3970 | 246 | 1 | 0 | 0 | 0 | 1958 | logfile |
✔ | 7QKW | 14055 | 2024-03-10 | 2021-12-19 | 2.32 | 1.74 | 2.60 | 2.3 | 0.010 | 1.93 | 1.0 | 0.10 | 13.53 | 0.01 | 2.534 | 0.00 | 0.00 | 5.4 | 94.6 | 0.0 | -2.79 | 0.41 | 0.81 | 7.02 | 2.3 | 0.002 | 0.53 | 0.0 | 0.05 | 16.60 | 0.00 | 2.475 | 2.77 | 2.54 | 5.4 | 94.6 | 0.0 | -2.80 | 1.30 | 0.42 | 0.85 | 6.06 | 4707 | 306 | 6 | 0 | 0 | 0 | 2439 | logfile |
✔ | 8BK9 | 16093 | 2024-03-22 | 2022-11-08 | 2.1 | 1.91 | 2.07 | 1.9 | 0.003 | 0.61 | 0.0 | 0.04 | 17.00 | 0.00 | 2.222 | 1.87 | 0.49 | 1.2 | 98.8 | 0.0 | 4.72 | 0.69 | 0.87 | 6.31 | 1.9 | 0.005 | 0.68 | 0.0 | 0.04 | 17.12 | 0.00 | 2.246 | 2.77 | 0.38 | 1.8 | 98.2 | 0.0 | 4.48 | 0.18 | 0.69 | 0.88 | 6.63 | 34978 | 4128 | 54 | 0 | 6 | 1156 | 0 | logfile |
✔ | 7XTZ | 33453 | 2024-03-10 | 2022-05-18 | 2.8 | 2.99 | 2.73 | 2.9 | 0.012 | 0.90 | 0.0 | 0.05 | 13.65 | 0.00 | 2.204 | 0.77 | 0.42 | 3.2 | 96.8 | 0.0 | -0.29 | 0.83 | 0.84 | 4.09 | 2.9 | 0.003 | 0.49 | 0.0 | 0.04 | 13.43 | 0.00 | 2.043 | 2.79 | 0.84 | 3.5 | 96.5 | 0.0 | -0.06 | 0.31 | 0.83 | 0.86 | 3.83 | 51900 | 3291 | 21 | 0 | 75 | 0 | 25032 | logfile |
✔ | 7U66 | 26361 | 2024-03-25 | 2022-03-03 | 3.1 | 2.19 | 3.03 | 2.0 | 0.009 | 0.78 | 0.0 | 0.05 | 14.20 | 0.00 | 2.105 | 2.81 | 0.92 | 3.5 | 96.3 | 0.2 | -0.05 | 0.78 | 0.78 | 3.54 | 2.0 | 0.003 | 0.53 | 0.0 | 0.04 | 15.71 | 0.00 | 2.072 | 2.79 | 1.95 | 2.6 | 97.4 | 0.0 | 0.82 | 1.00 | 0.80 | 0.81 | 3.08 | 26664 | 3348 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 7KPW | 22990 | 2024-03-10 | 2020-11-12 | 4.9 | 5.04 | 4.74 | 4.9 | 0.009 | 1.54 | 4.0 | 0.10 | 1.89 | 0.01 | 2.279 | 3.61 | 0.00 | 3.9 | 94.9 | 1.2 | 4.09 | 0.75 | 0.67 | — | 4.9 | 0.003 | 0.73 | 0.0 | 0.04 | 5.85 | 0.00 | 2.148 | 2.79 | 0.00 | 11.5 | 87.9 | 0.6 | -0.50 | 2.04 | 0.82 | 0.82 | — | 4313 | 865 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oD3 | 12818 | 2024-03-19 | 2021-04-28 | 2.8 | 2.59 | 3.00 | 2.7 | 0.004 | 0.61 | 0.0 | 0.05 | 13.90 | 0.00 | 1.953 | 2.55 | 0.23 | 4.8 | 95.2 | 0.0 | -1.05 | 0.73 | 0.81 | 3.95 | 2.7 | 0.004 | 0.62 | 0.0 | 0.05 | 15.68 | 0.00 | 2.189 | 2.80 | 1.94 | 4.0 | 96.0 | 0.0 | -0.55 | 0.29 | 0.75 | 0.85 | 3.73 | 24222 | 3036 | 6 | 0 | 36 | 0 | 0 | logfile |
✔ | 7PBS | 13301 | 2024-03-21 | 2021-08-02 | 3.3 | 2.55 | — | 3.2 | 0.005 | 0.71 | 0.0 | 0.05 | 14.97 | 0.01 | 1.778 | 1.66 | 0.25 | 0.7 | 99.3 | 0.0 | -0.18 | 0.65 | 0.77 | 3.13 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 17.18 | 0.00 | 1.765 | 2.80 | 0.69 | 1.9 | 98.1 | 0.0 | 1.30 | 1.31 | 0.71 | 0.82 | 2.44 | 31328 | 1918 | 15 | 30 | 11 | 0 | 15439 | logfile |
✔ | 7STL | 25432 | 2024-03-20 | 2021-11-14 | 2.95 | 3.30 | — | 3.2 | 0.004 | 0.75 | 0.0 | 0.04 | 11.53 | 0.00 | 2.190 | 0.38 | 0.15 | 2.3 | 97.7 | 0.0 | 1.82 | 0.67 | 0.82 | 3.24 | 3.2 | 0.003 | 0.46 | 0.0 | 0.04 | 14.18 | 0.00 | 2.088 | 2.80 | 0.66 | 3.5 | 96.4 | 0.1 | 1.76 | 0.54 | 0.66 | 0.84 | 3.12 | 25668 | 1600 | 4 | 0 | 8 | 0 | 12568 | logfile |