Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZH2	14718	2023-11-18	2022-04-05	2.71	2.24	2.66	2.5	0.003	0.62	0.0	0.04	13.21	0.00	2.038	2.41	0.30	3.3	96.6	0.1	-0.81	0.73	0.81	3.90	2.5	0.003	0.61	0.0	0.05	15.62	0.00	2.217	3.10	1.74	4.6	95.4	0.0	-0.72	0.39	0.74	0.83	4.04	24419	3060	9	0	36	0	0	logfile
✔	8ADG	15362	2023-11-18	2022-07-08	3.0	3.31	3.06	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.51	0.0	0.04	15.23	0.00	1.375	3.11	1.11	4.0	96.0	0.0	0.35	0.90	0.60	0.83	3.53	23183	1506	6	0	0	0	11375	logfile
✔	8Q9F	18279	2023-11-13	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.64	0.0	0.05	15.99	0.00	2.249	3.13	0.00	2.5	97.5	0.0	-2.11	1.84	0.44	0.86	7.01	6390	414	6	0	0	0	3258	logfile
✔	7ABH	11696	2023-11-17	2020-09-07	4.5	4.60	—	4.4	0.003	0.63	0.0	0.05	9.27	0.00	1.529	2.09	0.00	6.0	93.7	0.2	-2.78	0.75	0.77	—	4.4	0.003	0.65	0.0	0.04	9.63	0.00	2.166	3.13	0.00	8.9	91.1	0.0	-0.39	1.31	0.77	0.80	—	17922	3288	16	65	0	0	0	logfile
✔	7S8L	24896	2023-11-14	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7PBM	13295	2023-11-21	2021-08-02	3.2	3.36	3.30	3.3	0.004	0.72	0.0	0.04	14.81	0.01	1.840	1.18	0.06	1.1	98.9	0.0	-1.25	0.76	0.83	3.08	3.3	0.003	0.56	0.0	0.04	16.67	0.00	1.832	3.14	0.00	1.7	98.3	0.0	0.95	0.77	0.78	0.85	2.33	32079	1968	16	30	9	0	15819	logfile
✔	7ADZ	11734	2023-11-16	2020-09-17	2.5	2.56	—	2.5	0.015	1.54	0.0	0.09	11.19	0.01	1.343	4.44	0.08	2.0	98.0	0.0	-0.11	0.64	0.85	4.72	2.5	0.003	0.60	0.0	0.04	16.34	0.00	2.160	3.15	1.73	2.7	97.3	0.0	0.40	0.66	0.66	0.88	4.16	67794	8508	30	0	0	0	0	logfile
✔	7P8W	13256	2023-11-17	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.64	0.0	0.04	15.80	0.00	2.207	3.16	0.52	3.0	97.0	0.0	0.52	1.15	0.85	0.91	6.20	17668	2008	12	0	8	1110	0	logfile
✔	8FUZ	29482	2023-11-18	2023-01-18	2.1	2.08	2.21	2.1	0.007	0.86	0.0	0.05	17.81	0.01	2.232	4.59	1.17	2.1	97.9	0.0	0.92	0.78	0.91	5.73	2.1	0.003	0.56	0.0	0.04	17.79	0.00	2.228	3.17	1.53	1.6	98.4	0.0	0.75	0.34	0.77	0.91	5.53	24008	3120	16	0	16	0	0	logfile
✔	7S8P	24900	2023-11-14	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.81	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.8	0.004	0.67	0.0	0.04	15.58	0.00	2.121	3.18	2.61	5.4	94.6	0.0	0.13	0.36	0.84	0.84	3.71	8093	1089	5	0	1	0	0	logfile
✔	7S8o	24899	2023-11-14	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	8CWW	27030	2023-11-15	2022-05-19	2.74	3.44	2.94	3.3	0.003	0.48	0.0	0.03	24.42	0.00	2.368	2.74	0.25	2.6	97.4	0.0	0.45	0.86	0.87	3.79	3.3	0.006	0.61	0.0	0.04	26.05	0.00	2.138	3.18	1.96	4.1	95.9	0.0	1.77	0.46	0.90	0.91	2.97	13625	962	12	292	2	0	0	logfile
✔	7SoD	25267	2023-11-13	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.24	0.0	0.08	9.29	0.01	2.129	0.40	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	3.4	0.005	0.58	0.0	0.04	12.95	0.00	2.297	3.20	0.25	3.5	96.5	0.0	0.95	1.54	0.67	0.90	5.59	3830	473	5	0	7	0	0	logfile
✔	8FHQ	29099	2023-11-14	2022-12-14	2.81	3.05	2.83	3.1	0.008	0.82	0.0	0.05	13.69	0.01	2.303	4.02	0.65	3.5	96.5	0.0	-1.14	0.62	0.86	3.75	3.1	0.003	0.51	0.0	0.04	14.99	0.00	2.260	3.20	0.65	2.3	97.7	0.0	0.60	0.91	0.62	0.87	3.66	7306	950	4	0	4	0	0	logfile
✔	6U68	20662	2023-11-15	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.003	0.71	0.0	0.05	4.13	0.00	2.325	3.21	0.00	6.1	93.9	0.0	-0.04	1.78	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	6SAG	10130	2023-11-13	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.66	0.0	0.04	15.32	0.01	2.026	3.22	1.43	2.9	97.1	0.0	1.37	0.73	0.60	0.90	6.95	54080	6120	240	120	240	2840	0	logfile
✔	7UPA	26659	2023-11-16	2022-04-14	2.5	2.96	2.48	2.8	0.003	0.65	0.0	0.05	14.87	0.00	2.227	1.94	0.96	3.8	96.2	0.0	0.34	0.83	0.85	3.76	2.8	0.007	0.78	0.0	0.05	15.60	0.01	2.103	3.22	2.03	4.3	95.7	0.0	0.24	1.13	0.84	0.88	3.79	15745	2016	12	0	12	0	0	logfile
✔	8D68	27220	2023-11-15	2022-06-06	3.36	3.13	3.28	3.2	0.008	1.06	0.0	0.06	15.51	0.01	2.212	3.37	0.00	7.0	93.0	0.0	-1.43	0.70	0.84	3.63	3.2	0.005	0.68	0.0	0.05	15.03	0.00	2.171	3.22	0.14	7.1	92.9	0.0	-0.63	0.30	0.70	0.83	2.87	13055	1560	10	0	5	0	0	logfile
✔	7US6	26727	2023-11-18	2022-04-23	3.8	3.39	3.16	3.4	0.015	1.49	12.0	0.11	9.61	0.01	2.101	1.86	0.45	2.7	96.9	0.4	0.23	0.72	0.84	5.29	3.4	0.004	0.63	0.0	0.04	12.83	0.00	2.206	3.23	0.35	2.2	97.7	0.1	0.46	1.76	0.75	0.86	4.39	23747	3159	32	0	107	0	0	logfile
✔	7B16	11979	2023-11-18	2020-11-23	3.15	3.24	—	3.2	0.012	0.84	0.0	0.05	13.90	0.01	2.239	4.55	0.00	6.1	93.9	0.0	-1.02	0.73	0.85	3.32	3.2	0.002	0.53	0.0	0.04	15.35	0.00	2.256	3.23	0.09	3.0	97.0	0.0	1.62	0.98	0.71	0.86	2.34	21152	2572	8	0	12	0	0	logfile

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