Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7USL	26738	2023-11-19	2022-04-25	2.7	2.28	—	1.9	0.004	0.61	0.0	0.05	13.68	0.00	2.106	5.30	0.00	3.2	96.8	0.0	-0.47	0.75	0.73	3.51	1.9	0.006	0.73	0.0	0.05	16.01	0.01	2.094	7.90	2.39	4.5	95.5	0.0	-0.76	0.37	0.78	0.78	3.09	19065	2464	10	0	49	0	0	logfile
✔	8P2D	17361	2023-11-14	2023-05-15	2.59	2.21	2.59	2.0	0.002	0.51	0.0	0.04	12.08	0.00	1.968	10.26	4.79	8.1	91.9	0.0	-1.58	0.71	0.64	2.46	2.0	0.003	0.64	0.0	0.04	15.97	0.00	1.990	14.01	2.34	7.8	92.2	0.0	-0.98	1.30	0.73	0.67	2.03	8793	1087	4	0	4	0	0	logfile
✔	8EUF	28613	2023-11-20	2022-10-18	3.41	2.68	3.62	2.2	0.006	1.02	1.0	0.06	16.92	0.01	2.206	5.84	0.03	4.0	96.0	0.0	-1.91	0.74	0.77	1.59	2.0	0.004	0.85	0.0	0.05	17.93	0.00	2.131	18.26	0.82	4.0	96.0	0.0	-0.25	2.05	0.76	0.79	1.36	28707	3664	16	0	6	0	0	logfile
✔	7QKL	14046	2023-11-13	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.62	0.0	0.05	17.01	0.00	2.552	3.25	0.25	2.7	97.3	0.0	-1.29	2.03	0.44	0.91	7.62	3468	456	6	0	0	0	0	logfile
✔	7QKY	14057	2023-11-13	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.004	0.74	0.0	0.05	16.56	0.00	2.028	5.37	0.61	6.2	93.8	0.0	-3.22	1.00	0.39	0.84	7.47	5760	396	6	0	0	0	2862	logfile
✔	7V6A	31740	2023-11-15	2021-08-20	3.6	2.46	—	2.1	0.004	0.71	0.0	0.05	13.93	0.00	2.113	14.17	0.00	4.4	95.6	0.0	-1.88	0.71	0.70	2.85	2.0	0.004	0.73	0.0	0.04	16.34	0.00	2.079	14.99	0.89	4.5	95.5	0.0	-1.13	0.48	0.71	0.70	2.02	8584	1122	5	0	1	0	0	logfile
✔	8G6X	29787	2023-11-21	2023-02-16	2.31	1.96	2.20	2.0	0.011	0.99	0.0	0.06	15.24	0.03	1.474	7.58	5.85	4.1	95.8	0.2	-2.02	0.68	0.83	5.32	2.0	0.005	0.86	0.0	0.04	15.38	0.01	1.756	7.16	3.92	4.3	95.6	0.1	-0.57	0.26	0.69	0.85	5.06	93873	3177	72	3037	252	3462	0	logfile
✔	8D4X	27201	2023-11-19	2022-06-02	2.8	2.39	2.87	2.0	0.004	0.69	0.0	0.04	17.09	0.01	2.189	13.49	2.64	4.4	95.6	0.0	0.61	0.75	0.78	1.82	2.0	0.004	0.74	0.0	0.04	17.21	0.00	2.142	13.54	2.95	4.4	95.6	0.0	0.62	0.89	0.75	0.77	1.85	26409	3353	4	0	6	0	0	logfile
✔	7UQY	26702	2023-11-14	2022-04-20	3.0	2.33	2.95	2.1	0.003	0.59	0.0	0.04	12.61	0.00	2.197	10.04	0.00	5.0	95.0	0.0	-0.18	0.76	0.70	3.53	2.0	0.003	0.63	0.0	0.04	15.36	0.00	2.110	12.74	1.34	4.0	96.0	0.0	-0.18	0.43	0.76	0.75	2.98	9556	1167	4	1	3	0	0	logfile
✔	7NJN	12392	2023-11-18	2021-02-17	2.64	2.61	—	2.0	0.004	0.52	0.0	0.04	14.52	0.00	1.931	6.46	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.004	0.51	0.0	0.04	15.78	0.00	1.716	6.68	0.55	2.4	97.6	0.1	1.57	0.89	0.86	0.89	3.84	74548	4927	31	0	11	16	37299	logfile
✔	7XT4	33439	2023-11-16	2022-05-16	3.08	2.22	2.99	2.0	0.006	0.91	1.0	0.06	17.94	0.01	2.244	4.64	3.70	5.0	94.8	0.2	-2.53	0.80	0.80	3.42	2.0	0.007	0.71	0.0	0.05	18.46	0.00	2.162	8.64	0.65	5.2	94.7	0.1	0.16	1.44	0.81	0.82	3.07	16850	1939	5	55	4	0	0	logfile
✔	7TMW	26003	2023-11-14	2022-01-20	3.2	2.40	3.16	3.2	0.003	0.70	0.0	0.05	13.22	0.01	2.193	9.31	0.00	2.6	97.4	0.0	-0.28	0.71	0.64	1.01	2.0	0.004	0.65	0.0	0.04	15.85	0.00	2.125	15.17	0.63	3.8	96.2	0.0	0.29	0.52	0.73	0.68	0.81	7320	930	4	0	0	0	0	logfile
✔	7L1R	23116	2023-11-18	2020-12-15	3.1	2.19	—	2.1	0.011	1.76	28.0	0.11	14.03	0.01	1.965	4.03	3.32	3.3	96.7	0.0	-0.59	0.65	0.71	2.77	2.0	0.004	0.71	0.0	0.05	18.14	0.01	1.835	9.94	1.02	3.3	96.7	0.0	0.09	0.76	0.78	0.80	2.32	24199	3118	13	0	12	0	0	logfile
✔	8CDK	16576	2023-11-16	2023-01-31	3.32	2.38	3.25	2.0	0.003	0.57	0.0	0.04	11.83	0.00	2.006	4.82	0.00	1.8	98.2	0.0	1.31	0.80	0.81	2.60	2.0	0.003	0.56	0.0	0.04	14.87	0.00	2.112	5.10	0.26	1.9	98.1	0.0	2.03	0.38	0.82	0.83	2.07	16905	2392	6	0	3	0	0	logfile
✔	7WZ7	32905	2023-11-14	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	6.56	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.004	0.68	0.0	0.04	14.95	0.00	2.140	12.43	2.31	4.3	95.7	0.0	0.40	1.18	0.72	0.73	1.49	8676	1108	5	0	0	0	0	logfile
✔	7U7N	26382	2023-11-14	2022-03-07	3.47	2.42	3.51	2.0	0.004	0.69	0.0	0.05	17.19	0.01	2.164	8.81	0.89	2.6	97.4	0.0	1.04	0.74	0.76	2.33	2.0	0.004	0.67	0.0	0.04	17.50	0.00	2.113	9.85	0.13	3.4	96.6	0.0	1.04	0.34	0.74	0.77	2.17	7284	884	10	0	16	0	0	logfile
✔	7RZQ	24774	2023-11-13	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	8HK5	34846	2023-11-14	2022-11-24	3.0	2.26	2.92	2.1	0.003	0.50	0.0	0.04	11.85	0.00	2.073	2.69	0.24	0.8	99.2	0.0	-0.35	0.74	0.74	2.80	2.0	0.003	0.62	0.0	0.04	15.72	0.00	2.180	9.64	1.83	2.5	97.5	0.0	1.01	0.99	0.77	0.80	2.90	7604	967	6	0	2	0	0	logfile
✔	8ETV	28600	2023-11-14	2022-10-17	3.16	3.01	3.36	2.0	0.006	0.87	0.0	0.05	28.33	0.01	2.305	2.83	0.00	2.3	97.7	0.0	-0.99	0.80	0.77	1.76	2.0	0.005	0.68	0.0	0.04	29.10	0.00	2.092	14.26	0.69	2.7	97.3	0.0	1.79	0.46	0.81	0.80	1.48	8682	524	8	220	0	0	0	logfile
✔	8H8J	34549	2023-11-14	2022-10-23	3.2	2.26	3.27	2.1	0.003	0.64	0.0	0.04	9.84	0.00	1.939	9.85	2.59	2.3	97.6	0.1	-0.78	0.71	0.72	2.45	2.0	0.004	0.66	0.0	0.04	14.13	0.00	2.026	13.27	0.76	3.7	96.3	0.0	0.63	1.17	0.74	0.77	2.27	8842	1139	6	0	5	0	0	logfile

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