Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CZ6	30507	2023-11-13	2020-09-07	4.1	4.04	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	61.25	0.00	8.1	91.9	0.0	-1.66	0.68	0.64	—	4.1	0.004	0.84	0.0	0.05	11.13	0.01	2.108	15.25	0.00	5.5	94.5	0.0	-2.13	0.91	0.65	0.72	—	4535	630	5	0	0	0	0	logfile
✔	7FiK	31600	2023-11-15	2021-07-31	3.7	3.41	—	2.2	0.007	0.98	1.0	0.05	9.93	0.00	1.868	3.44	3.73	6.0	93.8	0.2	-2.13	0.50	0.52	1.35	2.2	0.002	0.60	0.0	0.04	11.18	0.00	2.017	5.54	0.21	3.9	96.1	0.0	1.53	0.65	0.60	0.69	1.62	116163	19039	32	0	722	0	0	logfile
✔	6XGC	22180	2023-11-16	2020-06-17	4.1	4.25	—	4.2	0.002	0.43	0.0	0.04	7.79	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.66	0.0	0.04	11.21	0.00	2.197	11.45	0.05	3.6	96.4	0.0	0.02	1.31	0.82	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	6CEB	7463	2023-11-15	2018-02-11	4.7	5.92	—	4.7	0.006	1.02	0.0	0.06	9.64	0.01	1.288	8.80	0.00	11.8	88.0	0.2	-3.39	0.88	0.82	—	4.7	0.005	0.81	0.0	0.05	11.21	0.00	2.127	25.98	0.00	12.8	87.2	0.0	-2.59	2.07	0.89	0.85	—	11722	1406	20	0	30	0	0	logfile
✔	5UoW	8579	2023-11-21	2017-02-01	4.5	8.74	—	7.2	0.011	1.84	17.0	0.10	14.83	0.02	1.072	54.88	10.98	4.5	94.5	1.0	-0.55	0.64	0.54	—	7.0	0.003	0.67	0.0	0.04	11.22	0.00	2.129	16.00	0.05	5.8	94.0	0.2	-0.05	2.56	0.78	0.81	—	24347	3186	15	0	446	0	0	logfile
✔	7YLU	33917	2023-11-15	2022-07-27	4.55	4.26	5.68	4.4	0.002	0.44	0.0	0.04	6.30	0.00	1.304	3.45	0.11	1.9	98.0	0.1	2.63	0.69	0.62	—	4.4	0.004	0.77	0.0	0.05	11.23	0.00	2.032	20.60	0.07	4.0	95.9	0.1	-0.01	1.19	0.74	0.71	—	65607	8578	17	0	0	0	0	logfile
✔	7T54	25694	2023-11-14	2021-12-11	4.5	7.46	4.54	4.6	0.004	0.70	1.0	0.05	10.84	0.00	2.078	8.94	0.68	4.4	95.5	0.1	0.70	0.62	0.64	—	4.6	0.005	0.74	0.0	0.04	11.24	0.00	2.155	18.95	0.00	9.4	90.3	0.3	-0.60	1.60	0.70	0.81	—	8552	1416	4	0	2	0	0	logfile
✔	7SB5	24970	2023-11-20	2021-09-23	4.2	4.53	4.05	4.2	0.021	1.77	8.0	0.11	10.00	0.01	2.138	1.99	0.00	2.2	97.8	0.0	0.57	0.86	0.85	—	4.2	0.003	0.59	0.0	0.04	11.25	0.00	2.160	7.15	0.00	2.9	97.1	0.0	0.47	0.58	0.86	0.87	—	29457	3550	19	0	263	0	0	logfile
✔	8DFQ	27411	2023-11-16	2022-06-22	3.96	4.53	3.89	4.0	0.007	1.12	0.0	0.06	12.30	0.01	2.270	0.98	0.15	1.8	98.2	0.0	-1.00	0.84	0.79	2.57	4.0	0.003	0.62	0.0	0.04	11.27	0.00	2.091	3.56	0.00	5.0	95.0	0.0	0.02	0.57	0.84	0.81	1.93	14233	1114	8	0	7	0	6514	logfile
✔	7K8Y	22735	2023-11-19	2020-09-27	4.4	5.34	—	4.4	0.003	0.55	0.0	0.05	10.63	0.00	1.137	21.70	0.04	2.8	97.0	0.3	-2.11	0.80	0.77	—	4.4	0.002	0.60	0.0	0.04	11.27	0.00	2.109	12.37	0.00	3.6	96.2	0.1	-0.32	1.11	0.81	0.81	—	25560	3242	8	0	23	0	0	logfile
✔	7EoU	31231	2023-11-18	2021-04-22	4.3	4.50	—	4.2	0.002	0.45	0.0	0.04	8.94	0.00	2.243	9.16	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.003	0.63	0.0	0.04	11.29	0.00	2.097	17.59	0.00	6.7	93.2	0.1	-0.41	1.64	0.89	0.80	—	24593	3084	8	0	19	0	0	logfile
✔	5YZ0	6862	2023-11-21	2017-12-11	4.7	4.90	—	4.7	0.008	1.37	6.0	0.07	11.42	0.01	2.154	17.47	0.97	15.6	82.8	1.7	-4.74	0.87	0.78	—	4.7	0.003	0.81	0.0	0.04	11.29	0.00	2.068	16.86	0.00	13.4	86.1	0.5	-0.12	1.61	0.86	0.77	—	33371	5404	4	0	0	0	0	logfile
✔	8APL	15574	2023-11-18	2022-08-10	4.1	3.88	4.12	3.8	0.002	0.48	0.0	0.04	9.13	0.00	2.213	10.27	1.93	3.1	96.9	0.0	0.14	0.76	0.73	—	3.7	0.004	0.67	0.0	0.04	11.31	0.00	2.098	19.65	0.12	4.8	95.2	0.0	-0.62	0.93	0.77	0.74	—	21888	2694	6	0	0	0	0	logfile
✔	7D9T	30620	2023-11-14	2020-10-14	4.1	4.18	—	3.9	0.003	0.57	0.0	0.04	10.99	0.00	2.230	6.74	0.00	3.9	96.1	0.0	-1.91	0.84	0.81	—	3.9	0.002	0.61	0.0	0.04	11.33	0.00	2.136	8.09	0.00	2.8	97.1	0.1	0.88	0.47	0.85	0.82	—	7451	1079	2	0	1	0	0	logfile
✔	7EoQ	31227	2023-11-19	2021-04-22	4.1	4.43	—	4.1	0.002	0.47	0.0	0.04	10.51	0.00	2.195	7.68	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.003	0.60	0.0	0.04	11.33	0.00	2.188	13.60	0.00	7.1	92.9	0.0	-0.51	1.22	0.88	0.79	—	24742	3144	8	0	10	0	0	logfile
✔	7Y7K	33668	2023-11-13	2022-06-22	4.4	4.96	5.46	4.3	0.010	1.63	0.0	0.07	13.11	0.01	2.215	33.93	3.90	10.3	86.1	3.6	-2.50	0.71	0.63	—	4.3	0.003	0.73	0.0	0.04	11.34	0.00	2.127	13.54	0.35	6.0	93.8	0.2	-1.28	1.66	0.73	0.67	—	2942	422	3	0	0	0	0	logfile
✔	7XY3	33509	2023-11-19	2022-05-31	4.6	4.69	4.58	4.5	0.005	0.75	0.0	0.06	8.52	0.01	2.198	6.54	0.07	7.9	92.1	0.0	-3.84	0.82	0.79	—	4.5	0.003	0.62	0.0	0.05	11.35	0.00	2.085	13.81	0.07	7.5	92.5	0.0	-1.94	2.21	0.83	0.81	—	26363	3302	7	0	38	0	0	logfile
✔	6NB6	0403	2023-11-19	2018-12-06	4.2	4.51	—	4.3	0.017	1.50	4.0	0.11	9.85	0.01	2.264	1.21	0.42	3.3	96.4	0.2	0.22	0.81	0.76	—	4.3	0.003	0.68	0.0	0.04	11.35	0.00	2.131	5.54	0.00	3.6	96.4	0.0	0.77	1.52	0.83	0.80	—	25783	3599	48	0	149	0	0	logfile
✔	5WEK	8819	2023-11-19	2017-07-10	4.6	4.81	—	4.6	0.006	0.93	0.0	0.05	9.25	0.01	2.248	6.20	0.27	4.8	94.9	0.2	-4.07	0.74	0.76	—	4.6	0.003	0.69	0.0	0.04	11.36	0.00	2.140	16.44	0.00	5.7	94.2	0.1	-0.80	1.47	0.77	0.80	—	27468	3484	8	0	4	0	0	logfile
✔	7Roi	24597	2023-11-20	2021-07-30	4.3	4.43	—	4.1	0.004	0.66	0.0	0.05	12.41	0.01	2.400	9.73	1.33	4.3	95.7	0.0	1.63	0.67	0.85	—	4.1	0.004	0.77	0.0	0.05	11.38	0.01	2.186	11.55	0.00	4.3	95.7	0.0	2.65	0.64	0.67	0.85	—	137200	18800	200	0	0	0	0	logfile

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