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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Wo4 | 32638 | 2024-03-16 | 2022-01-20 | 4.47 | 3.18 | — | 3.4 | 0.003 | 0.48 | 0.0 | 0.04 | 9.88 | 0.00 | 2.234 | 5.78 | 3.89 | 6.1 | 93.9 | 0.0 | -3.76 | 0.83 | 0.71 | — | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 10.90 | 0.00 | 2.144 | 8.77 | 0.03 | 8.3 | 91.7 | 0.0 | -2.01 | 0.82 | 0.81 | 0.72 | — | 71208 | 9096 | 24 | 0 | 90 | 0 | 0 | logfile |
✔ | 7SB5 | 24970 | 2024-03-21 | 2021-09-23 | 4.2 | 4.53 | 4.05 | 4.2 | 0.021 | 1.77 | 8.0 | 0.11 | 10.61 | 0.01 | 2.138 | 1.99 | 0.00 | 2.2 | 97.8 | 0.0 | 0.57 | 0.86 | 0.85 | — | 4.2 | 0.002 | 0.58 | 0.0 | 0.04 | 10.91 | 0.00 | 2.141 | 6.44 | 0.00 | 2.6 | 97.4 | 0.0 | 0.51 | 1.18 | 0.86 | 0.87 | — | 29457 | 3550 | 19 | 0 | 263 | 0 | 0 | logfile |
✔ | 6Y1A | 10669 | 2024-03-10 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 10.92 | 0.00 | 2.098 | 9.36 | 0.00 | 6.0 | 94.0 | 0.0 | -4.87 | 1.08 | 0.57 | 0.75 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 6E9Y | 9020 | 2024-03-10 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 25.35 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.004 | 0.55 | 0.0 | 0.03 | 10.92 | 0.00 | 1.988 | 9.72 | 0.00 | 1.7 | 98.3 | 0.0 | 2.09 | 1.49 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 6G9o | 4367 | 2024-03-23 | 2018-04-11 | 4.25 | 4.47 | — | 4.2 | 0.007 | 0.84 | 0.0 | 0.05 | 8.43 | 0.01 | 2.233 | 1.39 | 0.00 | 4.0 | 96.0 | 0.0 | -2.09 | 0.74 | 0.81 | — | 4.3 | 0.004 | 0.61 | 0.0 | 0.04 | 10.93 | 0.00 | 2.189 | 9.84 | 0.00 | 3.9 | 96.1 | 0.0 | -0.20 | 1.31 | 0.75 | 0.83 | — | 35532 | 4308 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B40 | 15835 | 2024-03-12 | 2022-09-19 | 4.6 | 4.13 | 4.51 | 3.6 | 0.002 | 0.50 | 0.0 | 0.04 | 10.45 | 0.00 | 2.149 | 11.85 | 4.31 | 4.2 | 95.7 | 0.0 | -0.38 | 0.77 | 0.69 | — | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 10.93 | 0.00 | 2.242 | 15.26 | 0.00 | 5.7 | 94.3 | 0.0 | -0.72 | 1.01 | 0.77 | 0.66 | — | 39466 | 4844 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BHS | 16068 | 2024-03-20 | 2022-10-31 | 3.24 | 3.78 | 3.26 | 3.5 | 0.020 | 0.75 | 0.0 | 0.04 | 7.51 | 0.00 | 2.122 | 5.68 | 0.00 | 1.2 | 98.8 | 0.0 | 1.23 | 0.77 | 0.83 | 3.91 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 10.96 | 0.00 | 2.226 | 6.38 | 0.74 | 1.3 | 98.7 | 0.0 | 1.33 | 0.69 | 0.78 | 0.84 | 3.60 | 27170 | 1680 | 10 | 0 | 10 | 0 | 13415 | logfile |
✔ | 6CEB | 7463 | 2024-03-15 | 2018-02-11 | 4.7 | 5.92 | — | 4.7 | 0.006 | 1.02 | 0.0 | 0.06 | 11.44 | 0.01 | 1.288 | 8.80 | 0.00 | 11.8 | 88.0 | 0.2 | -3.39 | 0.88 | 0.82 | — | 4.7 | 0.004 | 0.76 | 0.0 | 0.05 | 10.97 | 0.00 | 2.172 | 23.50 | 0.00 | 12.2 | 87.8 | 0.0 | -2.45 | 2.06 | 0.89 | 0.85 | — | 11722 | 1406 | 20 | 0 | 30 | 0 | 0 | logfile |
✔ | 7YLU | 33917 | 2024-03-13 | 2022-07-27 | 4.55 | 4.26 | 5.68 | 4.4 | 0.002 | 0.44 | 0.0 | 0.04 | 6.30 | 0.00 | 1.304 | 3.45 | 0.11 | 1.9 | 98.0 | 0.1 | 2.63 | 0.69 | 0.62 | — | 4.4 | 0.004 | 0.72 | 0.0 | 0.05 | 10.99 | 0.00 | 2.092 | 19.45 | 0.01 | 4.1 | 95.8 | 0.1 | 0.05 | 1.16 | 0.74 | 0.72 | — | 65607 | 8578 | 17 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T8C | 25744 | 2024-03-21 | 2021-12-16 | 4.5 | 3.21 | 4.51 | 4.6 | 0.001 | 0.42 | 0.0 | 0.04 | 7.59 | 0.00 | 2.347 | 5.08 | 0.41 | 3.6 | 96.4 | 0.0 | 0.76 | 0.63 | 0.54 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 10.99 | 0.00 | 2.224 | 13.57 | 0.00 | 5.2 | 94.8 | 0.0 | 0.08 | 1.20 | 0.67 | 0.64 | — | 28952 | 3626 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N2P | 9332 | 2024-03-16 | 2018-11-13 | 4.0 | 4.78 | — | 4.2 | 0.009 | 0.87 | 0.0 | 0.04 | 7.86 | 0.01 | 2.203 | 7.41 | 0.00 | 12.8 | 87.2 | 0.0 | -4.67 | 0.58 | 0.72 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 11.00 | 0.00 | 2.169 | 8.03 | 0.72 | 9.1 | 90.9 | 0.0 | 0.39 | 1.39 | 0.59 | 0.82 | — | 14570 | 880 | 10 | 0 | 0 | 0 | 7380 | logfile |
✔ | 8W77 | 37336 | 2024-03-10 | 2023-08-30 | 3.61 | 4.00 | 3.49 | 3.9 | 0.004 | 0.71 | 0.0 | 0.05 | 10.06 | 0.01 | 2.463 | 0.72 | 0.00 | 0.8 | 99.2 | 0.0 | 2.45 | 0.51 | 0.74 | 3.54 | 3.9 | 0.003 | 0.55 | 0.0 | 0.04 | 11.02 | 0.01 | 2.401 | 2.51 | 2.22 | 1.6 | 98.4 | 0.0 | 3.79 | 0.88 | 0.58 | 0.78 | 2.79 | 1601 | 260 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DiD | 7896 | 2024-03-24 | 2018-05-23 | 4.71 | 5.51 | — | 4.7 | 0.014 | 1.61 | 0.0 | 0.10 | 15.54 | 0.01 | 0.718 | 10.44 | 1.83 | 2.4 | 97.6 | 0.0 | 1.29 | 0.72 | 0.51 | — | 4.7 | 0.004 | 0.69 | 0.0 | 0.04 | 11.02 | 0.00 | 1.792 | 51.13 | 0.53 | 7.2 | 92.8 | 0.0 | 0.29 | 0.97 | 0.81 | 0.67 | — | 34674 | 3009 | 54 | 0 | 147 | 0 | 9465 | logfile |
✔ | 7EoU | 31231 | 2024-03-19 | 2021-04-22 | 4.3 | 4.50 | — | 4.2 | 0.002 | 0.45 | 0.0 | 0.04 | 9.12 | 0.00 | 2.243 | 9.16 | 1.92 | 3.9 | 96.0 | 0.1 | 0.78 | 0.86 | 0.73 | — | 4.2 | 0.003 | 0.61 | 0.0 | 0.04 | 11.03 | 0.00 | 2.096 | 15.88 | 0.00 | 6.3 | 93.7 | 0.1 | -0.21 | 1.63 | 0.89 | 0.80 | — | 24593 | 3084 | 8 | 0 | 19 | 0 | 0 | logfile |
✔ | 7Ro4 | 24587 | 2024-03-17 | 2021-07-30 | 4.3 | 4.51 | — | 4.2 | 0.006 | 0.78 | 0.0 | 0.05 | 13.23 | 0.01 | 2.237 | 17.04 | 4.00 | 5.4 | 94.6 | 0.0 | 0.68 | 0.68 | 0.85 | — | 4.2 | 0.004 | 0.79 | 0.0 | 0.05 | 11.04 | 0.01 | 2.091 | 14.04 | 0.01 | 6.0 | 94.0 | 0.0 | 1.87 | 0.59 | 0.68 | 0.85 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 5U0P | 8479 | 2024-03-18 | 2016-11-26 | 4.4 | 4.99 | — | 4.2 | 0.007 | 1.19 | 1.0 | 0.05 | 8.61 | 0.01 | 1.541 | 18.54 | 0.00 | 8.3 | 88.2 | 3.4 | -2.22 | 0.75 | 0.62 | — | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 11.05 | 0.00 | 2.046 | 15.42 | 0.00 | 7.9 | 91.4 | 0.6 | -0.16 | 1.61 | 0.82 | 0.78 | — | 20268 | 2557 | 16 | 0 | 372 | 0 | 0 | logfile |
✔ | 7LF1 | 23297 | 2024-03-22 | 2021-01-15 | 4.04 | 4.49 | 4.10 | 4.2 | 0.006 | 1.07 | 0.0 | 0.06 | 9.39 | 0.01 | 1.592 | 12.06 | 0.16 | 12.9 | 86.7 | 0.4 | -4.16 | 0.83 | 0.66 | — | 4.2 | 0.004 | 0.79 | 0.0 | 0.05 | 11.05 | 0.01 | 1.344 | 22.54 | 0.00 | 12.5 | 87.4 | 0.1 | -2.25 | 1.31 | 0.86 | 0.75 | — | 34518 | 4548 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 6QD0 | 4515 | 2024-03-18 | 2018-12-31 | 4.5 | 4.65 | 5.24 | 4.6 | 0.009 | 1.03 | 0.0 | 0.05 | 9.68 | 0.01 | 2.001 | 9.56 | 0.00 | 14.2 | 85.8 | 0.0 | -4.94 | 0.56 | 0.71 | — | 4.6 | 0.004 | 0.70 | 0.0 | 0.04 | 11.07 | 0.01 | 1.934 | 15.59 | 0.00 | 9.8 | 90.2 | 0.0 | -2.23 | 1.16 | 0.57 | 0.72 | — | 21746 | 1420 | 5 | 0 | 2 | 0 | 11100 | logfile |
✔ | 6MET | 9109 | 2024-03-15 | 2018-09-07 | 4.5 | 4.68 | 4.22 | 4.4 | 0.007 | 1.08 | 0.0 | 0.07 | 13.54 | 0.01 | 1.985 | 12.02 | 1.37 | 8.0 | 91.5 | 0.5 | -4.19 | 0.58 | 0.54 | — | 4.4 | 0.004 | 0.78 | 0.0 | 0.05 | 11.07 | 0.00 | 2.084 | 17.31 | 0.00 | 7.2 | 92.6 | 0.2 | -1.82 | 1.21 | 0.69 | 0.81 | — | 8911 | 1074 | 14 | 0 | 32 | 0 | 0 | logfile |
✔ | 8HGP | 34745 | 2024-03-14 | 2022-11-15 | 4.53 | 2.79 | 4.47 | 2.3 | 0.003 | 0.68 | 0.0 | 0.05 | 10.20 | 0.01 | 2.270 | 3.98 | 0.20 | 8.5 | 91.5 | 0.0 | -3.92 | 0.66 | 0.64 | — | 2.0 | 0.003 | 0.74 | 0.0 | 0.05 | 11.10 | 0.00 | 2.181 | 13.95 | 0.10 | 10.0 | 90.0 | 0.0 | -2.37 | 0.88 | 0.69 | 0.67 | — | 9169 | 1172 | 6 | 0 | 8 | 0 | 0 | logfile |