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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6E8G | 9005 | 2024-03-20 | 2018-07-29 | 2.9 | 3.09 | 2.96 | 3.0 | 0.006 | 0.89 | 0.0 | 0.05 | 10.62 | 0.01 | 2.201 | 2.53 | 0.34 | 0.9 | 99.1 | 0.0 | -1.52 | 0.59 | 0.84 | 2.92 | 3.0 | 0.005 | 0.61 | 0.0 | 0.04 | 17.80 | 0.00 | 2.148 | 9.47 | 3.31 | 0.7 | 99.3 | 0.0 | 4.29 | 2.01 | 0.60 | 0.89 | 1.53 | 97272 | 12276 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZBG | 11154 | 2024-03-18 | 2020-06-08 | 3.2 | 3.97 | 3.37 | 3.6 | 0.010 | 1.15 | 0.0 | 0.07 | 13.62 | 0.01 | 2.468 | 1.13 | 0.00 | 1.1 | 98.9 | 0.0 | 0.72 | 0.84 | 0.78 | 2.20 | 3.6 | 0.002 | 0.50 | 0.0 | 0.03 | 15.34 | 0.00 | 2.205 | 4.56 | 0.63 | 0.7 | 99.3 | 0.0 | 4.19 | 1.52 | 0.85 | 0.80 | 1.53 | 19534 | 1160 | 4 | 0 | 0 | 0 | 9902 | logfile |
✔ | 7UGJ | 26489 | 2024-03-10 | 2022-03-24 | 2.81 | 3.45 | 2.86 | 3.2 | 0.002 | 0.50 | 0.0 | 0.04 | 10.72 | 0.00 | 2.285 | 3.79 | 0.00 | 0.7 | 99.3 | 0.0 | 2.01 | 0.54 | 0.89 | 3.90 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 13.41 | 0.00 | 2.202 | 5.21 | 2.86 | 0.7 | 99.3 | 0.0 | 2.78 | 0.53 | 0.51 | 0.86 | 2.03 | 3095 | 416 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 6ZBJ | 11156 | 2024-03-23 | 2020-06-08 | 3.3 | 4.20 | 3.47 | 3.8 | 0.011 | 1.04 | 0.0 | 0.06 | 14.14 | 0.01 | 2.351 | 1.38 | 0.00 | 0.7 | 99.3 | 0.0 | -1.34 | 0.87 | 0.81 | 1.60 | 3.8 | 0.003 | 0.50 | 0.0 | 0.03 | 15.33 | 0.00 | 2.047 | 3.62 | 0.72 | 0.7 | 99.3 | 0.0 | 3.78 | 1.30 | 0.87 | 0.83 | 1.19 | 39212 | 2334 | 4 | 0 | 0 | 0 | 19864 | logfile |
✔ | 7QKX | 14056 | 2024-03-11 | 2021-12-19 | 3.16 | 3.10 | 2.99 | 3.2 | 0.011 | 1.82 | 0.0 | 0.09 | 10.51 | 0.01 | 2.523 | 0.00 | 0.00 | 3.3 | 96.7 | 0.0 | -1.48 | 0.39 | 0.79 | 6.00 | 3.2 | 0.002 | 0.53 | 0.0 | 0.05 | 12.55 | 0.00 | 2.085 | 3.67 | 0.52 | 0.7 | 99.3 | 0.0 | -1.48 | 0.81 | 0.42 | 0.86 | 5.33 | 6822 | 438 | 6 | 0 | 0 | 0 | 3480 | logfile |
✔ | 8Q8W | 18263 | 2024-03-11 | 2023-08-19 | 2.85 | 2.92 | 2.74 | 2.9 | 0.011 | 1.75 | 0.0 | 0.09 | 11.10 | 0.01 | 2.483 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | -1.38 | 0.29 | 0.78 | 6.35 | 2.9 | 0.002 | 0.47 | 0.0 | 0.05 | 15.76 | 0.00 | 2.331 | 0.91 | 0.54 | 0.7 | 99.3 | 0.0 | -0.61 | 1.98 | 0.39 | 0.89 | 6.58 | 6618 | 429 | 6 | 0 | 0 | 0 | 3372 | logfile |
✔ | 8CTD | 26986 | 2024-03-10 | 2022-05-14 | 3.42 | 3.05 | 3.37 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 15.42 | 0.00 | 2.248 | 9.77 | 0.00 | 2.2 | 97.8 | 0.0 | 0.84 | 0.45 | 0.78 | 1.12 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 16.35 | 0.00 | 2.201 | 7.13 | 4.39 | 0.7 | 99.3 | 0.0 | 1.58 | 1.15 | 0.45 | 0.79 | 1.59 | 3130 | 411 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 8Q7F | 18215 | 2024-03-10 | 2023-08-16 | 3.72 | 2.86 | 3.58 | 3.2 | 0.011 | 1.88 | 2.0 | 0.10 | 12.87 | 0.01 | 2.492 | 0.00 | 0.00 | 1.1 | 98.9 | 0.0 | -1.74 | 0.32 | 0.74 | 3.87 | 3.2 | 0.003 | 0.68 | 0.0 | 0.05 | 15.64 | 0.00 | 2.107 | 8.23 | 1.03 | 0.7 | 99.3 | 0.0 | -1.47 | 0.79 | 0.39 | 0.81 | 3.84 | 3402 | 450 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SK6 | 40556 | 2024-03-15 | 2023-04-18 | 2.96 | 3.57 | 3.01 | 3.4 | 0.002 | 0.44 | 0.0 | 0.04 | 8.10 | 0.00 | 2.218 | 5.79 | 0.86 | 0.4 | 99.6 | 0.0 | 0.87 | 0.84 | 0.88 | 4.80 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 12.02 | 0.00 | 2.172 | 8.63 | 0.79 | 0.7 | 99.3 | 0.0 | 0.96 | 0.42 | 0.84 | 0.89 | 4.20 | 12858 | 1686 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JLW | 22382 | 2024-03-24 | 2020-07-30 | 2.5 | 2.52 | 2.49 | 2.5 | 0.011 | 1.39 | 0.0 | 0.07 | 14.50 | 0.00 | 2.377 | 4.26 | 1.14 | 1.1 | 98.9 | 0.0 | 0.51 | 0.62 | 0.82 | 4.64 | 2.5 | 0.003 | 0.49 | 0.0 | 0.04 | 15.50 | 0.00 | 2.014 | 5.91 | 1.80 | 0.7 | 99.3 | 0.0 | 2.83 | 0.98 | 0.66 | 0.86 | 4.31 | 40284 | 2316 | 36 | 0 | 132 | 204 | 18720 | logfile |
✔ | 7PiL | 13441 | 2024-03-18 | 2021-08-20 | 2.5 | 2.21 | — | 2.4 | 0.005 | 0.98 | 0.0 | 0.05 | 16.60 | 0.01 | 2.058 | 1.90 | 0.21 | 1.7 | 98.3 | 0.0 | 1.10 | 0.73 | 0.84 | 5.38 | 2.4 | 0.003 | 0.69 | 0.0 | 0.04 | 17.47 | 0.00 | 1.930 | 6.69 | 2.11 | 0.7 | 99.3 | 0.0 | 3.09 | 1.24 | 0.72 | 0.86 | 4.65 | 22480 | 2291 | 66 | 0 | 73 | 4 | 0 | logfile |
✔ | 7QL0 | 14059 | 2024-03-11 | 2021-12-19 | 3.13 | 2.96 | 2.97 | 3.1 | 0.011 | 1.87 | 0.0 | 0.09 | 12.06 | 0.01 | 2.510 | 0.00 | 0.00 | 4.0 | 96.0 | 0.0 | -2.04 | 0.39 | 0.77 | 6.02 | 3.1 | 0.002 | 0.55 | 0.0 | 0.05 | 14.54 | 0.00 | 2.136 | 5.01 | 1.39 | 0.7 | 99.3 | 0.0 | -1.65 | 1.25 | 0.41 | 0.84 | 5.80 | 6390 | 414 | 6 | 0 | 0 | 0 | 3258 | logfile |
✔ | 7VZ4 | 32220 | 2024-03-15 | 2021-11-15 | 1.89 | 1.72 | — | 1.9 | 0.010 | 1.17 | 0.0 | 0.08 | 28.81 | 0.00 | 2.167 | 2.63 | 0.97 | 1.6 | 98.4 | 0.0 | 0.11 | 0.75 | 0.82 | 7.08 | 1.9 | 0.004 | 0.63 | 0.0 | 0.04 | 28.12 | 0.00 | 2.311 | 4.46 | 1.13 | 0.7 | 99.3 | 0.0 | 2.95 | 0.80 | 0.77 | 0.86 | 7.59 | 11843 | 746 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 7BES | 12158 | 2024-03-14 | 2020-12-24 | 2.85 | 2.95 | 2.86 | 2.9 | 0.013 | 1.03 | 0.0 | 0.05 | 13.91 | 0.00 | 2.236 | 7.96 | 0.85 | 0.3 | 99.7 | 0.0 | 0.37 | 0.73 | 0.82 | 3.32 | 2.9 | 0.003 | 0.56 | 0.0 | 0.04 | 16.11 | 0.00 | 2.010 | 9.60 | 2.22 | 0.8 | 99.2 | 0.0 | 0.46 | 1.15 | 0.73 | 0.84 | 2.94 | 9446 | 1234 | 12 | 6 | 4 | 0 | 0 | logfile |
✔ | 7o6Q | 12740 | 2024-03-11 | 2021-04-12 | 1.88 | 2.21 | — | 1.9 | 0.010 | 0.71 | 0.0 | 0.05 | 12.80 | 0.01 | 2.115 | 4.83 | 1.25 | 3.2 | 96.8 | 0.0 | -1.61 | 0.88 | 0.85 | 7.59 | 1.9 | 0.002 | 0.48 | 0.0 | 0.04 | 14.46 | 0.00 | 2.182 | 4.64 | 1.25 | 0.8 | 99.2 | 0.0 | 3.32 | 0.35 | 0.90 | 0.90 | 5.94 | 7999 | 997 | 8 | 0 | 0 | 399 | 0 | logfile |
✔ | 8UT1 | 42526 | 2024-03-22 | 2023-10-30 | 2.3 | 2.36 | 2.25 | 2.3 | 0.011 | 0.85 | 0.0 | 0.05 | 19.18 | 0.01 | 2.264 | 3.14 | 0.56 | 3.3 | 96.7 | 0.0 | 0.14 | 0.66 | 0.83 | 4.99 | 2.4 | 0.002 | 0.49 | 0.0 | 0.04 | 15.79 | 0.00 | 2.285 | 6.89 | 0.62 | 0.8 | 99.2 | 0.0 | 1.86 | 1.60 | 0.66 | 0.85 | 4.78 | 33140 | 1970 | 25 | 0 | 60 | 45 | 15845 | logfile |
✔ | 8AKS | 15491 | 2024-03-10 | 2022-07-31 | 3.9 | 4.35 | 4.16 | 4.2 | 0.003 | 0.59 | 0.0 | 0.03 | 13.89 | 0.00 | 1.976 | 3.70 | 0.00 | 0.5 | 99.5 | 0.0 | 3.46 | 0.85 | 0.79 | 0.58 | 4.1 | 0.003 | 0.60 | 0.0 | 0.03 | 15.24 | 0.00 | 1.836 | 34.61 | 1.73 | 0.8 | 99.2 | 0.0 | 4.52 | 0.70 | 0.88 | 0.83 | 0.30 | 107640 | 11760 | 120 | 0 | 60 | 0 | 11400 | logfile |
✔ | 7o0V | 12680 | 2024-03-11 | 2021-03-27 | 2.5 | 2.50 | — | 2.4 | 0.018 | 4.38 | 0.0 | 0.06 | 22.69 | 0.01 | 2.117 | 1.81 | 0.31 | 1.2 | 98.8 | 0.0 | 1.63 | 0.82 | 0.86 | 5.41 | 2.4 | 0.004 | 1.77 | 0.0 | 0.04 | 19.75 | 0.00 | 2.045 | 8.16 | 1.51 | 0.8 | 99.2 | 0.0 | 3.67 | 0.49 | 0.84 | 0.89 | 4.27 | 55475 | 4947 | 238 | 0 | 317 | 489 | 0 | logfile |
✔ | 6RVV | 4443 | 2024-03-11 | 2019-06-03 | 3.7 | 3.95 | — | 3.9 | 0.006 | 0.60 | 0.0 | 0.05 | 13.27 | 0.00 | 2.245 | 2.48 | 0.00 | 2.0 | 98.0 | 0.0 | -2.44 | 0.78 | 0.82 | 2.75 | 3.9 | 0.006 | 0.66 | 0.0 | 0.05 | 18.04 | 0.00 | 2.045 | 10.85 | 6.11 | 0.8 | 99.2 | 0.0 | -0.90 | 1.04 | 0.79 | 0.83 | 3.07 | 110208 | 14520 | 384 | 0 | 120 | 0 | 0 | logfile |
✔ | 8SDZ | 40355 | 2024-03-10 | 2023-04-07 | 2.86 | 3.25 | 2.87 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 16.15 | 0.00 | 2.135 | 4.33 | 1.43 | 0.8 | 99.2 | 0.0 | 0.91 | 0.56 | 0.82 | 2.83 | 3.2 | 0.002 | 0.50 | 0.0 | 0.04 | 16.37 | 0.00 | 2.123 | 5.48 | 3.33 | 0.8 | 99.2 | 0.0 | 1.49 | 0.43 | 0.58 | 0.83 | 2.52 | 3913 | 500 | 2 | 0 | 1 | 22 | 0 | logfile |