Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D14	27115	2023-11-14	2022-05-26	2.51	2.45	2.49	2.6	0.004	0.57	0.0	0.05	13.46	0.00	2.064	5.73	0.32	1.1	98.9	0.0	1.45	0.66	0.87	4.65	2.5	0.003	0.59	0.0	0.04	15.95	0.00	1.892	4.58	0.85	0.9	99.1	0.0	1.26	0.36	0.65	0.88	4.98	9225	1113	9	0	9	426	0	logfile
✔	8CKX	16705	2023-11-15	2023-02-16	2.97	3.24	2.98	3.3	0.005	0.87	0.0	0.06	12.70	0.01	2.453	0.76	0.19	1.0	99.0	0.0	-1.11	0.60	0.76	4.18	3.3	0.004	0.56	0.0	0.04	15.94	0.00	2.196	7.78	1.31	0.9	99.1	0.0	1.90	0.55	0.61	0.78	3.52	9857	1265	6	0	0	0	0	logfile
✔	8Q9M	18286	2023-11-14	2023-08-20	2.65	2.53	2.47	2.7	0.011	1.76	0.0	0.09	11.56	0.01	2.640	0.28	0.00	1.8	98.2	0.0	-1.02	0.33	0.79	6.36	2.6	0.003	0.52	0.0	0.05	17.65	0.00	2.386	1.28	0.51	0.9	99.1	0.0	-1.58	1.45	0.41	0.90	6.12	7032	450	6	0	0	0	3588	logfile
✔	8C2H	16390	2023-11-15	2022-12-22	2.64	2.34	2.44	2.5	0.009	1.45	3.0	0.08	16.15	0.01	2.319	2.75	6.15	3.5	96.5	0.0	-1.37	0.57	0.85	5.38	2.5	0.002	0.51	0.0	0.03	14.95	0.00	2.079	3.40	1.88	0.9	99.1	0.0	2.60	0.57	0.63	0.88	3.98	10071	1238	24	0	12	86	0	logfile
✔	7o0U	12679	2023-11-14	2021-03-27	2.35	2.42	—	2.3	0.018	4.37	0.0	0.06	24.75	0.01	2.121	1.73	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.3	0.003	1.70	0.0	0.03	21.23	0.00	1.834	7.34	1.15	0.9	99.1	0.0	4.12	2.04	0.84	0.89	4.24	55758	4972	236	0	320	491	0	logfile
✔	6XSS	22305	2023-11-14	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.96	0.00	2.251	16.62	0.49	0.9	99.1	0.0	2.42	1.33	0.74	0.79	0.26	8048	1040	4	0	0	0	0	logfile
✔	7SCA	25031	2023-11-14	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	7SJ1	25152	2023-11-13	2021-10-15	2.9	3.13	—	3.3	0.011	1.01	0.0	0.04	16.65	0.00	2.351	8.63	0.61	2.1	97.9	0.0	2.80	0.58	0.77	3.41	3.3	0.003	0.66	0.0	0.04	16.11	0.00	2.239	9.61	0.61	0.9	99.1	0.0	2.89	1.09	0.51	0.79	2.21	6463	784	9	0	34	1	0	logfile
✔	7NK9	12434	2023-11-17	2021-02-17	2.9	3.29	—	3.2	0.003	0.50	0.0	0.04	13.03	0.00	2.087	6.80	0.00	2.9	97.1	0.0	1.61	0.68	0.86	1.78	3.2	0.004	0.55	0.0	0.04	15.16	0.00	2.081	6.69	1.39	0.9	99.1	0.0	3.96	0.45	0.68	0.88	1.31	18081	1225	14	0	0	0	9158	logfile
✔	7ZDi	14650	2023-11-15	2022-03-29	2.9	3.06	2.82	3.1	0.005	0.93	0.0	0.04	13.22	0.01	2.378	3.63	0.00	0.9	99.1	0.0	1.10	0.64	0.84	5.30	3.1	0.003	0.76	0.0	0.04	14.62	0.00	2.238	4.42	0.25	0.9	99.1	0.0	3.61	0.28	0.69	0.87	4.13	10284	976	38	0	42	0	0	logfile
✔	6ZGL	11210	2023-11-16	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	7QRU	14124	2023-11-16	2022-01-12	2.24	2.32	2.24	2.4	0.020	2.18	9.0	0.10	14.53	0.02	2.058	6.63	2.50	2.6	97.4	0.1	-1.62	0.79	0.91	4.88	2.4	0.004	0.60	0.0	0.04	15.74	0.00	2.169	5.83	1.43	0.9	99.1	0.0	2.24	1.15	0.79	0.90	4.06	16100	1957	18	0	3	360	0	logfile
✔	8CKY	16706	2023-11-15	2023-02-16	2.6	3.00	2.57	2.9	0.004	0.82	0.0	0.05	12.58	0.01	1.934	7.36	0.54	0.5	99.5	0.0	0.20	0.62	0.77	5.97	2.9	0.004	0.56	0.0	0.04	17.98	0.00	2.163	8.97	2.17	0.9	99.1	0.0	1.82	0.63	0.62	0.79	4.63	10338	1344	12	0	0	0	0	logfile
✔	7o0W	12681	2023-11-14	2021-03-27	2.47	2.42	—	2.3	0.018	4.34	0.0	0.06	24.63	0.01	2.010	1.98	0.28	1.4	98.6	0.0	1.25	0.82	0.86	5.37	2.3	0.003	1.68	0.0	0.03	21.17	0.00	1.957	7.86	0.98	0.9	99.1	0.0	3.96	1.12	0.83	0.88	3.91	56476	5076	236	0	320	406	0	logfile
✔	6RAH	4775	2023-11-15	2019-04-06	2.8	2.99	3.01	2.9	0.008	1.53	9.0	0.09	9.90	0.01	2.022	9.87	0.00	2.1	97.7	0.2	-2.51	0.72	0.81	2.84	2.9	0.003	0.64	0.0	0.04	15.87	0.00	1.911	6.71	1.63	0.9	99.1	0.0	1.79	0.72	0.76	0.85	2.10	10161	1277	7	0	4	4	0	logfile
✔	7Y5H	33620	2023-11-13	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.59	0.0	0.04	15.31	0.00	2.037	6.90	0.57	0.9	99.1	0.0	1.70	1.10	0.66	0.80	1.37	4704	600	4	0	4	0	0	logfile
✔	8D1K	27133	2023-11-16	2022-05-27	2.28	2.51	2.43	2.5	0.013	1.28	0.0	0.07	18.10	0.01	2.287	6.59	2.65	1.1	98.9	0.0	0.89	0.70	0.91	4.11	2.5	0.004	0.58	0.0	0.04	17.05	0.00	2.240	5.19	1.59	0.9	99.1	0.0	1.18	0.37	0.66	0.89	4.00	16305	1880	10	0	45	0	0	logfile
✔	8EHR	28150	2023-11-14	2022-09-14	3.2	2.95	3.03	3.1	0.003	0.55	0.0	0.05	13.08	0.00	2.374	2.29	0.00	0.0	100.0	0.0	1.82	0.58	0.85	3.24	3.1	0.002	0.48	0.0	0.04	15.23	0.00	2.320	4.65	0.37	0.9	99.1	0.0	1.26	1.17	0.58	0.87	3.27	7350	1022	7	0	0	0	0	logfile
✔	7XoK	33350	2023-11-13	2022-05-01	2.7	3.82	2.75	3.2	0.003	0.50	0.0	0.04	13.15	0.00	2.160	10.61	0.00	1.1	98.9	0.0	2.23	0.87	0.86	1.97	3.2	0.003	0.57	0.0	0.04	14.79	0.00	2.108	12.44	0.34	1.0	99.0	0.0	2.10	0.30	0.87	0.86	1.75	53970	7336	14	0	0	0	0	logfile
✔	7QL0	14059	2023-11-13	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.2	0.003	0.59	0.0	0.05	14.36	0.00	2.094	6.58	0.00	1.0	99.0	0.0	-1.73	1.65	0.41	0.84	6.04	6390	414	6	0	0	0	3258	logfile

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