Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HDD	0204	2023-11-19	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	7Wo7	32641	2023-11-13	2022-01-20	3.8	3.99	—	3.9	0.003	0.71	0.0	0.04	11.20	0.00	2.163	6.93	8.82	9.7	90.3	0.0	-4.70	0.72	0.74	1.98	3.9	0.004	0.76	0.0	0.05	14.75	0.01	2.118	14.80	0.92	16.9	83.1	0.0	-3.35	1.81	0.75	0.76	1.82	4870	634	3	0	1	0	0	logfile
✔	7JG9	22315	2023-11-17	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.56	0.0	0.20	7.47	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	2.2	0.006	1.14	0.0	0.09	7.80	0.01	2.173	4.53	0.00	16.6	83.2	0.2	-2.08	1.33	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	6i0Y	0322	2023-11-21	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.02	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.008	0.95	0.0	0.05	16.40	0.01	0.954	26.63	1.60	14.9	83.3	1.9	-2.98	1.62	0.61	0.74	0.68	93619	3551	48	3049	144	439	0	logfile
✔	6V4U	21048	2023-11-14	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.1	0.005	0.88	0.0	0.05	13.39	0.01	2.103	18.42	0.81	16.6	83.4	0.0	-2.30	0.90	0.77	0.69	1.61	7074	1106	3	0	0	0	0	logfile
✔	6GJ1	0009	2023-11-15	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.57	0.01	2.086	22.39	0.00	16.4	83.4	0.1	-3.83	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6NY1	8994	2023-11-15	2019-02-10	4.2	4.56	—	4.3	0.007	1.11	0.0	0.06	21.20	0.01	2.099	9.52	0.33	18.6	81.0	0.4	-4.84	0.80	0.80	—	4.4	0.003	0.72	0.0	0.04	20.31	0.00	2.152	15.54	0.00	16.4	83.5	0.1	-2.18	0.57	0.79	0.78	—	9911	783	4	154	121	0	0	logfile
✔	6SH5	10194	2023-11-15	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.004	0.82	0.0	0.04	5.28	0.00	2.265	5.49	0.00	16.4	83.6	0.0	-2.90	1.64	0.82	0.82	—	11529	2338	7	0	0	0	0	logfile
✔	6SHS	10204	2023-11-14	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.90	0.00	2.248	6.00	0.00	16.4	83.6	0.0	-5.26	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7U14	26277	2023-11-13	2022-02-19	4.5	4.22	—	4.6	0.006	0.94	0.0	0.07	16.90	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	1.06	0.0	0.07	14.10	0.01	2.129	21.22	0.00	16.3	83.7	0.0	-4.33	1.63	0.35	0.64	—	3456	405	6	0	12	0	0	logfile
✔	6PiF	20349	2023-11-20	2019-06-26	3.4	3.57	3.44	3.5	0.014	1.74	2.0	0.09	16.21	0.00	1.256	6.99	2.17	14.8	81.3	3.9	-4.83	0.64	0.76	2.73	3.5	0.004	0.86	0.0	0.05	17.14	0.00	2.047	12.10	0.36	15.6	83.7	0.6	-2.95	1.57	0.73	0.85	2.48	28954	3448	11	60	0	0	0	logfile
✔	6WUN	21917	2023-11-15	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.78	0.0	0.04	14.77	0.00	2.028	12.03	0.38	16.1	83.8	0.1	-3.62	0.57	0.68	0.80	1.47	10082	1326	4	0	0	0	0	logfile
✔	5Li4	4052	2023-11-17	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.004	1.04	0.0	0.05	13.71	0.01	1.950	32.75	0.09	15.2	83.8	1.0	-3.85	4.19	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	7M65	23689	2023-11-13	2021-03-25	4.1	4.11	—	4.3	0.050	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.87	0.0	0.05	11.68	0.00	2.156	22.17	0.00	16.1	83.9	0.0	-6.30	4.44	0.51	0.72	—	2025	275	10	0	5	0	0	logfile
✔	6NY2	8996	2023-11-15	2019-02-10	3.2	3.56	—	3.4	0.007	1.02	0.0	0.05	20.27	0.01	2.266	6.07	0.66	15.6	83.6	0.8	-4.66	0.78	0.83	2.12	3.4	0.003	0.69	0.0	0.04	20.74	0.00	2.185	11.56	0.49	16.0	83.9	0.1	-1.36	0.47	0.77	0.84	1.49	10538	794	4	180	121	0	0	logfile
✔	6ZRR	11383	2023-11-13	2020-07-14	4.0	4.04	3.78	4.3	0.015	1.45	0.0	0.06	14.32	0.00	2.189	28.46	0.00	5.0	95.0	0.0	-4.56	0.62	0.69	—	4.4	0.003	0.67	0.0	0.05	14.89	0.00	2.125	28.37	0.00	16.1	83.9	0.0	-5.00	2.47	0.65	0.74	—	5724	414	18	0	0	0	2664	logfile
✔	6oRQ	20178	2023-11-17	2019-04-30	4.4	4.71	4.38	4.5	0.008	1.31	0.0	0.08	12.61	0.01	2.039	6.79	1.04	16.3	83.4	0.3	-4.97	0.65	0.83	—	4.5	0.003	0.89	0.0	0.05	12.93	0.00	2.145	16.63	0.24	16.0	83.9	0.1	-3.57	1.60	0.65	0.83	—	20176	2430	40	0	83	0	0	logfile
✔	6oKS	20103	2023-11-15	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.84	0.0	0.05	14.37	0.01	2.223	15.59	0.00	16.0	84.0	0.0	-4.93	2.23	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	7FG3	31577	2023-11-14	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	5XLo	6729	2023-11-16	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.55	0.29	17.3	81.9	0.8	-6.02	0.58	0.64	0.55	3.9	0.004	0.89	0.0	0.04	17.39	0.01	2.066	20.24	0.88	15.6	84.1	0.3	-4.03	1.62	0.62	0.67	0.65	15413	2073	9	38	0	0	0	logfile

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