Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NYB	0541	2023-11-14	2019-02-11	4.1	4.15	—	4.0	0.014	1.76	3.0	0.09	14.33	0.00	2.070	6.97	3.66	5.4	94.4	0.2	-3.02	0.75	0.74	—	4.0	0.005	0.80	0.0	0.04	13.88	0.00	1.864	12.75	0.00	4.2	95.8	0.0	0.25	2.59	0.79	0.80	—	8842	1097	6	0	6	0	0	logfile
✔	7XLT	33286	2023-11-13	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	16.27	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	4.3	0.005	0.81	0.0	0.04	14.19	0.01	2.037	32.09	0.00	10.8	89.2	0.0	-2.87	1.77	0.75	0.73	—	4985	431	4	80	0	0	0	logfile
✔	6XPE	22286	2023-11-13	2020-07-08	4.1	4.23	—	4.2	0.006	0.82	0.0	0.04	14.30	0.00	1.492	20.11	2.08	10.6	88.1	1.3	-5.36	0.60	0.84	—	4.2	0.003	0.66	0.0	0.04	13.58	0.00	1.803	10.92	0.00	5.3	94.7	0.0	-0.18	2.62	0.61	0.82	—	4292	554	4	0	8	0	0	logfile
✔	6WGC	21662	2023-11-18	2020-04-05	4.3	4.58	—	4.4	0.006	0.99	0.0	0.05	18.74	0.01	1.558	9.33	0.04	7.3	92.6	0.1	-4.72	0.78	0.73	—	4.4	0.003	0.69	0.0	0.04	17.26	0.00	2.084	15.71	0.00	5.5	94.5	0.0	-1.30	0.85	0.79	0.78	—	24605	2804	15	82	4	0	0	logfile
✔	6M5V	30094	2023-11-15	2020-03-11	4.5	4.75	—	4.6	0.007	0.86	1.0	0.05	16.07	0.00	2.209	18.28	5.50	9.0	90.9	0.2	-3.04	0.56	0.57	—	4.6	0.003	0.77	0.0	0.04	13.66	0.00	2.149	20.95	0.00	8.3	91.7	0.0	-0.40	2.40	0.63	0.74	—	10549	1359	5	0	5	0	0	logfile
✔	7ELE	31182	2023-11-15	2021-04-09	4.9	8.62	—	7.5	0.007	1.16	0.0	0.06	19.44	0.01	2.210	17.86	8.44	9.1	90.1	0.8	-3.55	0.87	0.71	—	7.5	0.003	0.73	0.0	0.04	16.04	0.00	2.055	27.10	0.00	9.2	90.6	0.2	-1.70	1.68	0.88	0.77	—	10733	1137	2	83	0	0	0	logfile
✔	4UiS	2974	2023-11-15	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.004	0.80	0.0	0.04	11.88	0.00	2.133	16.76	0.00	9.9	88.9	1.2	-1.58	1.65	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✔	7TAi	25775	2023-11-15	2021-12-20	3.2	3.59	3.19	3.5	0.006	0.86	0.0	0.05	16.76	0.01	2.087	12.50	1.06	2.8	97.2	0.0	0.97	0.71	0.84	2.65	3.5	0.005	0.68	0.0	0.04	16.42	0.00	2.078	11.03	0.00	3.9	96.1	0.0	1.28	0.32	0.73	0.87	2.46	11109	1272	6	0	18	0	0	logfile
✔	7P16	13157	2023-11-13	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	15.07	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.67	0.0	0.04	14.47	0.00	2.185	11.13	0.00	3.7	96.3	0.0	0.83	1.45	0.64	0.76	—	3621	444	3	0	1	0	0	logfile
✔	8G88	29843	2023-11-16	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	28.10	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.005	0.67	0.0	0.04	29.46	0.00	2.058	27.11	0.00	2.3	97.7	0.0	1.56	2.55	0.91	0.81	—	13995	891	11	336	0	0	0	logfile
✔	7o0Z	12684	2023-11-14	2021-03-28	3.7	4.56	—	4.1	0.007	1.08	0.0	0.06	15.07	0.01	2.319	5.56	0.44	6.4	93.6	0.0	-5.96	0.74	0.79	1.62	4.1	0.003	0.76	0.0	0.04	15.96	0.00	2.141	14.44	0.00	5.7	94.3	0.0	-0.01	1.19	0.74	0.80	1.31	8730	1142	4	0	0	0	0	logfile
✔	5TTP	8467	2023-11-13	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.77	0.0	0.04	5.16	0.00	2.264	6.32	0.00	13.8	85.9	0.4	0.24	1.81	0.66	0.69	—	5616	1138	2	0	0	0	0	logfile
✔	7RPW	24624	2023-11-15	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.19	0.00	1.756	18.05	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.68	0.0	0.04	18.76	0.00	1.090	16.95	0.00	10.2	89.8	0.1	-3.38	3.75	0.77	0.67	—	10594	1179	10	62	5	0	0	logfile
✔	6DBQ	7847	2023-11-17	2018-05-03	4.22	4.34	—	4.2	0.005	1.05	2.0	0.04	23.25	0.01	1.539	28.02	0.12	10.4	89.5	0.1	-4.19	0.81	0.82	—	4.2	0.004	0.73	0.0	0.04	21.74	0.00	1.700	20.11	0.00	6.3	93.6	0.1	-1.23	1.53	0.80	0.82	—	19956	1939	10	222	6	0	0	logfile
✔	7RPX	24625	2023-11-15	2021-08-04	4.2	3.22	—	4.2	0.003	0.56	0.0	0.04	15.79	0.00	1.655	21.85	0.86	8.9	90.8	0.3	-2.44	0.71	0.61	—	4.1	0.004	0.77	0.0	0.05	16.91	0.00	2.056	19.40	0.00	11.1	88.6	0.2	-2.78	2.31	0.72	0.62	—	11754	1327	8	62	3	0	0	logfile
✔	5YQ7	6828	2023-11-17	2017-11-05	4.1	4.39	—	4.3	0.019	1.76	0.0	0.05	17.70	0.01	1.542	20.04	0.14	14.6	85.2	0.2	-4.34	0.63	0.77	—	4.3	0.004	1.15	1.0	0.04	16.12	0.00	1.944	11.27	0.00	12.0	88.0	0.0	-1.38	1.40	0.64	0.78	—	20009	2107	68	0	120	0	0	logfile
✔	7YCH	33739	2023-11-14	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	14.59	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.67	0.0	0.04	15.50	0.00	1.805	31.05	0.00	0.0	0.0	0.0	—	0.90	0.94	0.88	—	8661	0	2	404	4	0	0	logfile
✔	7Y5B	33615	2023-11-22	2022-06-16	4.4	4.11	4.45	4.0	0.002	0.56	0.0	0.04	14.57	0.00	1.888	7.15	0.00	2.7	97.3	0.0	1.29	0.79	0.81	—	4.0	0.003	0.57	0.0	0.04	14.63	0.00	1.900	8.03	0.00	3.0	97.0	0.0	1.33	0.25	0.79	0.81	—	35959	4838	26	0	22	0	0	logfile
✔	7U2K	26313	2023-11-14	2022-02-24	3.3	3.77	—	3.5	0.010	0.76	0.0	0.05	15.07	0.00	2.198	6.93	0.43	6.0	94.0	0.0	-1.90	0.83	0.89	3.29	3.6	0.002	0.57	0.0	0.04	15.27	0.00	2.204	5.35	0.00	3.5	96.5	0.0	0.54	0.50	0.78	0.85	1.93	6755	889	5	0	1	0	0	logfile
✔	6PVM	20493	2023-11-18	2019-07-21	4.5	4.24	—	4.3	0.006	1.18	0.0	0.06	12.60	0.01	2.154	6.75	0.87	15.6	84.1	0.3	-6.13	0.49	0.74	—	4.3	0.003	0.88	0.0	0.04	13.70	0.00	2.121	13.51	0.00	13.6	86.1	0.3	-2.67	1.03	0.49	0.74	—	21006	2576	6	0	2	0	0	logfile

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