Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UiY	26557	2023-11-19	2022-03-29	3.22	3.19	—	3.2	0.006	0.86	0.0	0.04	14.26	0.00	1.981	3.47	0.00	0.3	99.7	0.0	-0.25	0.60	0.81	3.14	3.2	0.003	0.58	0.0	0.04	16.78	0.00	1.873	9.28	0.15	2.7	97.3	0.0	0.45	0.68	0.61	0.85	2.98	76262	4819	20	0	17	0	38283	logfile
✔	7UiW	26555	2023-11-18	2022-03-29	3.33	3.27	—	3.3	0.004	0.77	0.0	0.04	13.74	0.00	2.005	2.75	0.02	0.3	99.7	0.0	-0.17	0.59	0.75	2.41	3.3	0.003	0.55	0.0	0.04	16.63	0.00	1.810	9.34	0.47	2.6	97.4	0.0	0.28	0.83	0.61	0.82	2.57	75891	4792	19	0	17	0	38115	logfile
✔	7RU6	24698	2023-11-13	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.002	0.50	0.0	0.03	13.30	0.00	2.118	7.19	0.34	1.9	98.1	0.0	4.08	0.78	0.74	0.70	—	5426	331	2	0	0	0	2725	logfile
✔	6U1X	20614	2023-11-21	2019-08-17	3.0	3.37	3.11	3.3	0.004	0.55	0.0	0.04	10.38	0.00	1.986	3.82	0.11	0.3	99.7	0.0	-3.08	0.67	0.81	4.07	3.3	0.003	0.54	0.0	0.04	14.55	0.00	1.865	6.65	1.28	4.2	95.8	0.0	0.00	2.28	0.68	0.83	3.54	33529	2087	3	0	2	0	16768	logfile
✔	8oP9	17045	2023-11-16	2023-04-06	3.36	3.32	3.35	3.6	0.003	0.55	0.0	0.04	9.03	0.00	2.012	3.97	0.34	0.3	99.7	0.0	2.02	0.61	0.78	2.96	3.6	0.003	0.58	0.0	0.05	14.15	0.00	2.170	4.33	0.07	1.9	98.1	0.0	0.95	1.18	0.61	0.84	3.40	13811	1660	15	0	36	10	0	logfile
✔	6C9i	7436	2023-11-18	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.81	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.46	0.0	0.04	15.19	0.00	2.246	5.13	0.16	0.0	100.0	0.0	3.57	2.43	0.72	0.90	3.61	23700	3087	24	0	0	0	0	logfile
✔	7T4F	25675	2023-11-14	2021-12-09	2.7	3.13	2.69	3.1	0.004	0.70	0.0	0.05	14.61	0.00	2.228	4.75	2.44	0.3	99.7	0.0	0.54	0.33	0.71	4.04	3.1	0.003	0.52	0.0	0.05	15.29	0.00	2.217	4.40	1.41	0.6	99.4	0.0	0.30	0.37	0.34	0.80	4.44	7224	980	4	0	0	0	0	logfile
✔	7BES	12158	2023-11-14	2020-12-24	2.85	2.95	2.86	2.9	0.013	1.03	0.0	0.05	10.71	0.00	2.236	7.96	0.85	0.3	99.7	0.0	0.37	0.73	0.82	3.32	2.9	0.004	0.57	0.0	0.04	15.76	0.00	2.083	9.60	3.28	1.1	98.9	0.0	0.39	1.15	0.73	0.84	2.91	9446	1234	12	6	4	0	0	logfile
✔	6T93	10408	2023-11-15	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.74	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.005	0.70	0.0	0.04	27.95	0.00	2.163	11.91	0.00	2.6	97.4	0.0	2.32	1.13	0.87	0.87	1.98	12199	758	10	302	0	0	0	logfile
✔	8FFY	29070	2023-11-14	2022-12-11	3.6	3.59	3.60	3.8	0.008	0.72	0.0	0.05	14.71	0.00	2.125	4.09	0.00	0.3	99.7	0.0	-0.66	0.60	0.63	1.56	3.8	0.003	0.58	0.0	0.04	16.36	0.00	2.211	8.68	0.15	2.1	97.9	0.0	0.47	1.39	0.74	0.80	1.70	7442	770	5	61	2	0	0	logfile
✔	7PM8	13524	2023-11-15	2021-09-02	3.5	3.91	3.50	3.4	0.004	0.88	1.0	0.05	15.57	0.01	1.316	6.40	0.09	0.3	99.7	0.0	-1.60	0.90	0.83	2.90	3.4	0.003	0.67	0.0	0.04	15.94	0.00	2.001	9.62	0.28	2.2	97.8	0.0	0.90	1.30	0.91	0.85	2.61	10149	1260	6	0	5	0	0	logfile
✔	7PLV	13503	2023-11-15	2021-09-01	3.5	4.06	3.57	3.5	0.005	0.81	0.0	0.05	14.95	0.01	1.322	4.61	0.00	0.4	99.6	0.0	-1.54	0.91	0.83	3.00	3.5	0.003	0.64	0.0	0.04	15.42	0.00	2.146	7.79	0.09	1.0	99.0	0.0	1.80	0.72	0.92	0.86	2.57	10139	1263	5	0	3	0	0	logfile
✔	7KEJ	22839	2023-11-16	2020-10-11	3.8	3.55	—	3.6	0.021	1.73	0.0	0.11	10.03	0.01	1.201	0.59	0.00	0.4	99.6	0.0	1.20	0.82	0.84	4.49	3.6	0.003	0.64	0.0	0.04	14.71	0.00	2.126	6.60	0.41	2.0	98.0	0.0	0.01	1.66	0.82	0.83	3.57	13806	1740	18	0	24	0	0	logfile
✔	7SN3	25210	2023-11-19	2021-10-27	3.1	3.31	—	3.2	0.009	1.11	4.0	0.07	13.91	0.01	1.922	5.26	0.10	0.4	99.3	0.3	-0.84	0.75	0.82	3.32	3.2	0.004	0.66	0.0	0.05	14.83	0.00	2.126	8.24	0.24	4.5	95.4	0.1	0.17	0.95	0.76	0.87	2.93	27447	3451	15	0	54	0	0	logfile
✔	6Po3	20408	2023-11-13	2019-07-03	4.28	4.38	—	4.3	0.003	0.65	0.0	0.04	11.03	0.00	2.179	2.53	0.00	0.4	99.6	0.0	-1.68	0.75	0.75	—	4.3	0.003	0.55	0.0	0.04	13.05	0.00	1.942	9.70	0.04	3.5	96.5	0.0	0.04	2.55	0.79	0.79	—	53225	3406	20	0	12	0	26724	logfile
✔	7PM6	13522	2023-11-18	2021-09-02	3.0	3.43	3.02	2.8	0.012	1.07	4.0	0.06	14.85	0.01	1.304	6.32	0.04	0.4	99.6	0.0	-1.15	0.92	0.83	2.83	2.8	0.003	0.67	0.0	0.04	15.60	0.00	1.996	8.61	1.05	1.4	98.6	0.0	1.40	1.28	0.93	0.88	2.38	23334	2904	15	0	13	0	0	logfile
✔	8iXL	35795	2023-11-15	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.46	0.0	0.04	15.79	0.00	2.249	5.53	0.63	0.4	99.6	0.0	5.68	1.12	0.68	0.85	1.11	10970	1455	35	0	0	0	0	logfile
✔	7ooA	13008	2023-11-16	2021-05-27	2.7	2.63	2.63	2.6	0.005	0.66	0.0	0.05	15.27	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.003	0.47	0.0	0.04	16.81	0.00	2.229	5.62	0.81	1.2	98.8	0.0	1.78	1.11	0.70	0.88	3.88	15610	1834	14	0	35	0	0	logfile
✔	7WiJ	32531	2023-11-15	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	8B0Y	15798	2023-11-16	2022-09-08	2.79	2.95	2.78	2.9	0.003	0.48	0.0	0.04	15.80	0.00	0.376	13.70	2.29	0.4	99.6	0.0	0.80	0.77	0.87	4.09	2.9	0.003	0.54	0.0	0.04	16.74	0.00	2.013	9.28	2.34	0.8	99.2	0.0	0.67	0.38	0.75	0.86	4.04	117180	16020	360	0	0	1860	0	logfile

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