Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PiF	20349	2023-11-20	2019-06-26	3.4	3.57	3.44	3.5	0.014	1.74	2.0	0.09	16.21	0.00	1.256	6.99	2.17	14.8	81.3	3.9	-4.83	0.64	0.76	2.73	3.5	0.004	0.86	0.0	0.05	17.14	0.00	2.047	12.10	0.36	15.6	83.7	0.6	-2.95	1.57	0.73	0.85	2.48	28954	3448	11	60	0	0	0	logfile
✔	7KVE	23048	2023-11-15	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.69	0.0	0.05	16.52	0.01	2.162	12.03	0.08	12.6	87.4	0.0	-4.06	1.20	0.75	0.73	2.24	11142	1374	1	0	0	0	0	logfile
✔	7V47	31702	2023-11-13	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	2.9	0.005	0.72	0.0	0.06	17.25	0.00	2.432	8.29	3.25	20.3	79.7	0.0	-4.30	0.33	0.44	0.80	6.27	2484	366	6	0	0	0	0	logfile
✔	7KVF	23049	2023-11-15	2020-11-28	3.6	4.39	3.76	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.82	0.66	1.37	3.6	0.004	0.81	0.0	0.04	16.18	0.01	2.117	22.47	0.41	14.1	85.9	0.0	-3.65	2.38	0.87	0.76	0.72	11142	1374	1	0	0	0	0	logfile
✔	6PiG	20350	2023-11-20	2019-06-26	3.5	3.54	3.59	3.5	0.014	1.76	1.0	0.09	16.07	0.00	2.173	1.98	1.58	15.2	81.4	3.5	-4.85	0.60	0.76	2.54	3.5	0.003	0.79	0.0	0.04	17.26	0.01	2.067	11.20	0.36	14.8	84.7	0.5	-2.91	0.60	0.65	0.79	2.18	28867	3439	11	60	0	0	0	logfile
✔	5WRG	6679	2023-11-16	2016-12-01	4.3	4.45	—	4.3	0.007	1.40	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.004	1.00	0.0	0.05	12.31	0.00	2.019	20.07	0.00	18.0	81.8	0.1	-3.25	1.52	0.68	0.76	—	16317	2208	3	0	0	0	0	logfile
✔	5XLP	6731	2023-11-14	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.003	0.91	0.0	0.04	15.84	0.01	1.956	18.56	0.11	15.4	84.4	0.2	-3.85	2.41	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	5YFP	6827	2023-11-21	2017-09-21	4.4	8.20	—	6.7	0.006	1.35	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.005	1.05	0.0	0.05	11.10	0.00	2.021	30.50	0.10	19.1	80.6	0.3	-2.79	3.94	0.90	0.74	—	33096	5982	8	0	0	0	0	logfile
✔	6TNF	10531	2023-11-14	2019-12-07	3.8	2.90	3.67	2.7	0.032	1.64	0.0	0.32	18.93	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.6	0.006	1.19	0.0	0.10	15.66	0.01	2.088	17.70	0.00	21.3	78.6	0.1	-4.12	0.55	0.65	0.64	—	9559	2206	5	0	66	0	0	logfile
✔	7WSC	32753	2023-11-13	2022-01-28	3.78	4.01	—	4.0	0.013	1.67	5.0	0.10	15.39	0.01	1.600	41.09	4.99	14.7	81.6	3.6	-4.09	0.65	0.78	2.33	4.0	0.004	0.87	0.0	0.04	16.82	0.01	2.113	19.26	0.55	11.6	87.9	0.5	-2.53	1.27	0.64	0.77	1.88	3369	422	4	0	2	0	0	logfile
✔	6WUN	21917	2023-11-15	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.78	0.0	0.04	14.77	0.00	2.028	12.03	0.38	16.1	83.8	0.1	-3.62	0.57	0.68	0.80	1.47	10082	1326	4	0	0	0	0	logfile
✔	7D43	30568	2023-11-20	2020-09-22	4.3	4.40	—	4.3	0.006	0.99	0.0	0.05	14.62	0.01	2.018	28.49	0.31	18.3	81.6	0.1	-6.11	0.83	0.79	—	4.3	0.005	0.79	0.0	0.05	13.78	0.00	2.083	20.44	0.00	12.6	87.3	0.0	-2.75	1.57	0.83	0.78	—	31009	4347	14	0	0	0	0	logfile
✔	6HDD	0204	2023-11-19	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	6PYH	20524	2023-11-15	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.75	0.55	18.2	81.6	0.2	-5.21	0.84	0.83	—	4.3	0.003	0.66	0.0	0.05	13.78	0.00	2.008	14.24	0.00	8.9	91.1	0.0	-2.30	0.64	0.84	0.82	—	13187	1648	3	0	0	0	0	logfile
✔	7FG2	31574	2023-11-14	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.004	0.76	0.0	0.05	14.45	0.00	2.118	18.43	0.00	13.3	86.4	0.3	-2.81	0.77	0.37	0.64	—	9342	1202	2	0	0	0	0	logfile
✘	5ADY	3133	2023-11-21	2015-08-25	4.5	4.75	—	4.5	0.011	1.28	0.0	0.06	18.75	0.01	1.391	57.89	0.21	11.7	81.7	6.7	-3.35	0.72	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	97364	4197	35	3020	2	0	0	logfile
✔	5H1S	9572	2023-11-20	2016-10-11	3.5	3.54	—	3.5	0.010	1.06	1.0	0.07	19.14	0.01	1.028	46.50	3.21	16.7	81.7	1.6	-4.90	0.78	0.77	1.92	3.5	0.004	0.73	0.0	0.04	18.48	0.01	1.916	14.60	0.90	11.6	88.1	0.3	-2.87	0.66	0.79	0.82	1.21	90825	3276	32	3018	0	0	0	logfile
✔	6oKS	20103	2023-11-15	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.84	0.0	0.05	14.37	0.01	2.223	15.59	0.00	16.0	84.0	0.0	-4.93	2.23	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	6WHU	21676	2023-11-18	2020-04-08	3.93	4.34	—	4.2	0.009	0.94	0.0	0.05	15.08	0.00	2.095	18.95	0.72	18.0	81.8	0.2	-4.87	0.69	0.75	1.46	4.2	0.003	0.74	0.0	0.05	16.16	0.00	2.139	10.49	0.34	9.7	90.3	0.0	-1.48	0.57	0.73	0.80	1.48	23368	3120	10	0	16	0	0	logfile
✔	7WXi	32880	2023-11-14	2022-02-14	4.2	4.31	4.10	4.2	0.008	0.87	0.0	0.05	15.47	0.00	2.148	24.87	0.58	18.2	81.8	0.0	-4.77	0.78	0.81	—	4.2	0.003	0.74	0.0	0.04	13.94	0.00	2.179	14.04	0.00	8.3	91.7	0.0	-1.11	1.26	0.78	0.80	—	6522	862	4	0	0	0	0	logfile

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