Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FCi	31526	2023-11-13	2021-07-14	3.3	3.20	3.10	3.4	0.003	0.60	0.0	0.04	16.43	0.01	2.250	7.53	4.55	3.6	96.4	0.0	0.59	0.52	0.76	2.38	3.4	0.003	0.61	0.0	0.04	16.12	0.01	2.252	7.71	0.31	3.0	97.0	0.0	0.69	0.27	0.68	0.86	2.38	5613	734	3	0	0	0	0	logfile
✔	7V7R	31779	2023-11-19	2021-08-21	2.9	3.74	—	3.2	0.004	0.61	0.0	0.05	13.58	0.00	2.163	6.28	0.00	4.5	95.4	0.1	0.06	0.89	0.87	2.64	3.2	0.003	0.59	0.0	0.04	14.81	0.00	2.180	6.28	1.07	4.5	95.4	0.1	0.27	0.27	0.88	0.87	2.31	25362	3095	42	0	84	0	0	logfile
✔	7V7F	31769	2023-11-19	2021-08-21	2.9	3.82	—	3.2	0.005	0.63	0.0	0.05	13.68	0.00	2.061	7.26	0.00	5.1	94.7	0.1	-0.13	0.88	0.86	2.44	3.2	0.002	0.55	0.0	0.05	15.10	0.00	2.104	6.88	1.25	4.4	95.5	0.1	0.03	0.27	0.89	0.87	2.22	25503	3114	42	0	84	0	0	logfile
✔	8G46	29714	2023-11-14	2023-02-08	2.2	2.34	2.28	2.4	0.009	0.98	0.0	0.06	15.97	0.01	2.207	6.43	1.70	3.0	97.0	0.0	-0.25	0.54	0.79	4.41	2.4	0.003	0.65	0.0	0.04	16.40	0.00	2.145	5.43	1.17	2.9	97.1	0.0	0.13	0.27	0.62	0.83	4.16	8603	1064	7	0	2	110	0	logfile
✔	7UUR	26801	2023-11-16	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	3.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	0.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile
✔	7WUG	32830	2023-11-17	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.19	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.002	0.51	0.0	0.04	15.01	0.00	2.140	5.28	0.22	3.4	96.5	0.0	1.41	0.27	0.78	0.87	1.92	17515	2239	5	0	0	0	0	logfile
✔	8D8o	27253	2023-11-15	2022-06-08	3.35	3.59	3.32	3.5	0.004	0.57	0.0	0.04	15.92	0.01	2.133	7.67	0.16	5.9	94.1	0.0	-0.78	0.73	0.82	2.46	3.5	0.003	0.54	0.0	0.04	16.20	0.00	2.200	7.23	0.23	5.2	94.8	0.0	-0.60	0.27	0.73	0.82	2.29	11819	1536	2	0	1	0	0	logfile
✔	7RX5	24725	2023-11-14	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.003	0.35	0.0	0.03	13.46	0.00	2.257	6.36	0.00	0.0	100.0	0.0	5.01	0.27	0.71	0.88	2.75	9120	1160	40	0	0	0	0	logfile
✔	8D0K	27107	2023-11-20	2022-05-26	4.27	4.58	4.33	4.3	0.002	0.50	0.0	0.04	14.88	0.00	2.188	9.52	0.06	3.7	96.1	0.1	0.70	0.82	0.81	—	4.3	0.003	0.56	0.0	0.04	14.95	0.00	2.156	11.62	0.00	4.9	95.0	0.1	0.53	0.27	0.82	0.81	—	31011	3820	8	20	0	0	0	logfile
✔	8EUi	24423	2023-11-17	2022-10-18	3.1	3.13	—	3.1	0.004	0.52	0.0	0.03	15.20	0.00	2.143	7.87	0.18	3.8	96.2	0.1	-0.02	0.82	0.81	3.11	3.1	0.008	0.72	0.0	0.05	15.56	0.01	2.025	8.95	0.32	4.6	95.4	0.0	0.09	0.27	0.83	0.83	2.71	122892	7155	47	3131	1	0	0	logfile
✔	8HW4	35050	2023-11-15	2022-12-28	3.52	3.89	3.62	3.8	0.033	1.39	0.0	0.17	15.27	0.01	2.142	14.67	0.09	8.2	91.8	0.0	-2.38	0.67	0.80	1.92	3.8	0.005	0.89	0.0	0.06	15.92	0.01	2.126	21.08	0.09	6.9	93.1	0.0	-2.35	0.27	0.66	0.79	1.49	10746	1364	1	0	2	0	0	logfile
✔	7QPC	14117	2023-11-15	2022-01-03	3.44	3.64	3.38	3.7	0.004	0.62	0.0	0.04	14.86	0.00	2.199	5.74	0.00	2.5	97.5	0.0	1.61	0.59	0.79	1.03	3.7	0.002	0.53	0.0	0.03	15.21	0.00	2.116	7.50	0.00	2.9	97.1	0.0	1.58	0.27	0.58	0.80	1.38	10830	654	6	0	4	62	5540	logfile
✔	7R42	14256	2023-11-17	2022-02-08	2.3	2.33	—	2.3	0.008	0.85	0.0	0.84	17.09	0.01	1.921	3.20	1.23	2.6	97.4	0.0	0.55	0.71	0.90	5.95	2.3	0.007	1.30	0.0	0.25	16.92	0.00	1.988	4.57	1.26	1.8	98.2	0.0	1.73	0.27	0.71	0.91	5.30	69480	8204	114	0	58	1545	0	logfile
✔	8THU	41272	2023-11-15	2023-07-18	3.1	3.86	3.08	3.2	0.004	0.68	0.0	0.04	28.74	0.01	1.528	5.35	0.00	2.2	97.8	0.0	1.40	0.93	0.89	2.77	3.2	0.004	0.57	0.0	0.03	28.76	0.00	2.179	8.06	0.49	2.6	97.4	0.0	2.67	0.27	0.94	0.90	1.87	11902	760	10	291	0	0	0	logfile
✔	8GVE	34291	2023-11-14	2022-09-15	3.17	3.38	3.19	3.4	0.003	0.62	0.0	0.04	14.33	0.01	2.113	5.93	0.00	5.7	94.3	0.0	0.31	0.64	0.80	1.68	3.4	0.003	0.57	0.0	0.04	15.91	0.00	2.236	6.11	0.11	5.7	94.3	0.0	0.93	0.27	0.63	0.81	1.12	8054	1020	2	0	0	0	0	logfile
✔	7TMQ	25999	2023-11-20	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	9.95	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.4	0.004	0.54	0.0	0.04	13.96	0.00	1.947	9.19	0.38	2.9	97.1	0.0	1.25	0.27	0.79	0.86	2.79	31642	4736	16	0	2	0	0	logfile
✔	7LYA	23590	2023-11-17	2021-03-06	2.91	3.17	2.99	3.2	0.007	0.67	0.0	0.04	27.51	0.00	1.325	3.62	0.16	2.5	97.5	0.0	-1.91	0.70	0.84	2.92	3.2	0.004	0.58	0.0	0.03	28.03	0.00	2.151	4.12	1.41	2.0	98.0	0.0	2.06	0.27	0.73	0.86	2.55	12098	767	10	293	0	0	0	logfile
✔	8HBH	34632	2023-11-14	2022-10-28	3.1	3.30	—	3.3	0.008	0.84	0.0	0.05	15.08	0.01	2.007	10.23	0.90	3.2	96.8	0.0	-0.10	0.68	0.78	2.79	3.3	0.003	0.57	0.0	0.04	15.40	0.00	1.106	9.41	0.22	2.1	97.9	0.0	0.67	0.27	0.72	0.81	2.49	8502	1099	4	0	5	0	0	logfile
✔	7MTS	23996	2023-11-16	2021-05-13	3.2	3.09	—	3.0	0.007	0.77	0.0	0.05	13.11	0.01	2.213	4.48	0.13	3.1	96.9	0.0	0.41	0.83	0.84	2.92	3.0	0.002	0.51	0.0	0.04	14.25	0.00	2.164	3.65	0.13	2.5	97.5	0.0	0.61	0.27	0.83	0.86	2.40	16068	2150	7	0	3	0	0	logfile
✔	7W4C	32300	2023-11-17	2021-11-27	2.7	2.83	—	2.8	0.007	0.82	0.0	0.04	18.50	0.01	2.188	7.03	1.33	3.4	96.5	0.1	0.86	0.80	0.89	3.32	2.8	0.002	0.53	0.0	0.04	17.52	0.00	2.146	6.93	1.79	3.5	96.4	0.0	1.26	0.27	0.78	0.88	3.06	68216	8270	69	0	47	0	0	logfile

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