Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SWQ	25482	2023-11-14	2021-11-21	3.79	4.09	3.83	4.0	0.004	0.74	0.0	0.04	16.54	0.00	1.915	13.13	0.00	10.7	89.3	0.0	-2.38	0.80	0.76	2.70	4.0	0.007	0.80	0.0	0.05	18.43	0.01	1.875	19.41	0.72	10.9	89.1	0.0	-2.07	0.64	0.84	0.83	2.15	6998	791	4	35	1	0	0	logfile
✔	6QX3	4661	2023-11-18	2019-03-07	3.79	3.94	—	3.9	0.007	0.77	0.0	0.04	14.67	0.00	2.050	4.45	0.00	9.7	90.3	0.0	-5.16	0.74	0.79	2.40	3.8	0.004	0.62	0.0	0.04	16.40	0.00	1.988	9.64	0.17	10.1	89.9	0.0	-2.38	0.72	0.76	0.80	2.53	21587	1337	6	14	0	0	10646	logfile
✔	7TXi	26158	2023-11-20	2022-02-09	3.5	3.86	—	3.7	0.008	0.99	0.0	0.05	12.09	0.01	0.409	13.97	0.00	5.7	93.8	0.5	1.39	0.53	0.82	2.16	3.6	0.003	0.80	0.0	0.05	15.08	0.01	2.129	11.75	0.22	6.5	93.0	0.5	0.91	1.29	0.54	0.83	2.34	28660	3920	20	0	0	0	0	logfile
✔	7LX5	23566	2023-11-13	2021-03-03	3.44	3.85	3.41	3.9	0.005	0.62	0.0	0.04	10.10	0.00	2.198	4.72	0.00	3.4	96.6	0.0	-0.46	0.71	0.81	3.26	3.9	0.003	0.74	0.0	0.04	15.48	0.00	2.191	10.91	1.08	2.9	97.1	0.0	-0.18	1.43	0.70	0.81	3.17	3485	448	3	0	0	0	0	logfile
✘	7P14	13155	2023-11-13	2021-07-01	3.66	3.82	3.50	3.8	0.004	0.64	0.0	0.04	16.56	0.00	2.295	7.45	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3796	454	3	0	3	0	0	logfile
✔	7XJK	33230	2023-11-14	2022-04-18	3.3	3.56	3.42	3.5	0.005	0.65	0.0	0.04	13.52	0.01	2.172	11.97	0.00	2.7	97.3	0.0	0.32	0.64	0.77	2.84	3.6	0.003	0.58	0.0	0.04	15.69	0.00	2.163	10.24	0.34	3.0	97.0	0.0	0.89	0.35	0.64	0.79	2.31	8570	1139	6	0	0	0	0	logfile
✔	7QHA	13968	2023-11-13	2021-12-11	2.97	4.06	3.00	3.8	0.003	0.59	0.0	0.04	12.23	0.00	2.268	6.68	0.00	2.7	97.3	0.0	1.85	0.69	0.86	2.37	3.8	0.003	0.84	0.0	0.04	15.27	0.00	2.086	9.93	2.98	2.9	97.1	0.0	2.06	0.43	0.69	0.86	2.08	5282	684	4	0	2	0	0	logfile
✔	7UiZ	26558	2023-11-19	2022-03-29	3.24	3.45	—	3.4	0.004	0.75	0.0	0.05	13.43	0.00	2.014	2.79	0.00	0.1	99.9	0.0	-1.03	0.60	0.81	2.98	3.4	0.003	0.58	0.0	0.04	16.75	0.00	1.831	9.23	0.22	2.7	97.3	0.0	0.26	0.91	0.60	0.85	2.99	76521	4837	20	0	22	0	38390	logfile
✔	7P16	13157	2023-11-13	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	15.07	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.67	0.0	0.04	14.47	0.00	2.185	11.13	0.00	3.7	96.3	0.0	0.83	1.45	0.64	0.76	—	3621	444	3	0	1	0	0	logfile
✔	8AYN	15717	2023-11-16	2022-09-02	2.8	2.38	2.63	2.8	0.013	1.23	0.0	0.05	15.14	0.00	2.003	5.50	0.00	3.9	96.1	0.0	0.76	0.68	0.80	3.90	2.8	0.006	0.64	0.0	0.04	16.36	0.00	2.151	6.65	1.91	2.8	97.2	0.0	0.58	1.17	0.64	0.81	3.62	15748	1998	12	0	28	0	0	logfile
✔	8AA2	15291	2023-11-22	2022-06-29	3.1	3.39	2.97	3.2	0.012	0.60	0.0	0.09	13.22	0.00	1.958	7.56	0.00	3.3	96.6	0.1	0.59	0.84	0.86	3.61	3.2	0.003	0.54	0.0	0.04	14.48	0.00	1.885	7.11	0.19	3.3	96.7	0.1	-0.19	1.56	0.85	0.90	3.88	35942	4472	19	0	49	0	0	logfile
✔	7FiJ	31599	2023-11-13	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	7V68	31738	2023-11-15	2021-08-20	3.4	2.57	—	3.3	0.007	0.83	1.0	0.05	12.68	0.02	2.151	16.41	0.00	3.1	96.8	0.1	-0.44	0.71	0.69	1.57	2.1	0.003	0.78	0.0	0.05	16.09	0.00	2.117	18.89	1.12	3.6	96.4	0.0	-0.67	0.54	0.72	0.72	1.46	8577	1122	5	0	2	0	0	logfile
✔	7RAZ	24390	2023-11-15	2021-07-05	3.4	4.46	3.18	3.9	0.004	0.87	0.0	0.04	13.50	0.00	2.201	11.69	0.00	2.3	97.7	0.0	1.13	0.79	0.85	2.19	3.9	0.004	0.72	0.0	0.04	14.04	0.00	2.113	14.03	0.45	2.5	97.5	0.0	1.10	0.40	0.79	0.87	2.20	10472	1330	14	0	7	0	0	logfile
✔	7F4i	31453	2023-11-14	2021-06-18	3.1	3.87	—	3.5	0.009	1.21	0.0	0.06	11.96	0.01	2.169	1.75	0.00	4.3	95.7	0.0	-0.38	0.67	0.82	3.32	3.5	0.004	0.71	0.0	0.04	14.94	0.00	2.222	10.12	0.47	2.2	97.8	0.0	1.37	2.50	0.66	0.83	2.24	8031	1030	7	0	1	0	0	logfile
✔	6VGQ	21199	2023-11-17	2020-01-08	3.5	3.74	—	3.8	0.005	0.88	0.0	0.04	9.86	0.01	1.335	1.32	0.00	1.7	98.3	0.0	0.69	0.63	0.76	2.44	3.8	0.004	0.60	0.0	0.04	14.85	0.00	2.187	8.34	0.20	1.9	97.8	0.3	1.54	1.33	0.69	0.83	2.69	19348	2527	21	0	7	0	0	logfile
✔	7A02	11591	2023-11-17	2020-08-06	3.0	3.22	—	3.2	0.008	0.74	0.0	0.05	12.61	0.00	2.323	8.00	0.00	8.2	91.8	0.0	-1.94	0.60	0.85	3.89	3.2	0.005	0.68	0.0	0.05	15.24	0.00	2.126	6.39	5.50	6.6	93.4	0.0	-1.20	0.95	0.59	0.88	4.15	18699	2576	23	0	0	0	0	logfile
✘	7o6E	12738	2023-11-21	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35304	4248	48	0	0	1392	0	logfile
✔	7TDH	25829	2023-11-16	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.63	0.00	2.254	4.64	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.030	2.65	66.0	0.11	19.67	0.02	0.888	153.73	3.43	43.9	54.5	1.5	-7.26	2.44	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile
✔	7Z4Z	14511	2023-11-13	2022-03-06	4.0	3.29	3.87	3.9	0.003	0.75	1.0	0.05	14.17	0.01	2.305	11.39	0.00	2.1	97.3	0.6	-4.82	0.61	0.72	—	3.9	0.003	0.85	0.0	0.05	16.65	0.01	2.162	11.72	0.44	13.2	86.5	0.3	-1.73	0.82	0.58	0.73	—	4817	673	4	0	0	0	0	logfile

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