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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6V6B | 21067 | 2024-03-14 | 2019-12-04 | 3.8 | 3.96 | — | 3.9 | 0.005 | 0.55 | 0.0 | 0.04 | 14.36 | 0.00 | 2.211 | 5.33 | 0.00 | 5.1 | 94.9 | 0.0 | -5.29 | 0.54 | 0.84 | 1.85 | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 16.91 | 0.00 | 2.219 | 6.21 | 3.00 | 3.0 | 97.0 | 0.0 | -0.36 | 0.50 | 0.53 | 0.83 | 0.78 | 9115 | 1111 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P1H | 13159 | 2024-03-16 | 2021-07-01 | 3.9 | 4.12 | — | 3.9 | 0.005 | 1.01 | 0.0 | 0.05 | 14.38 | 0.01 | 2.016 | 12.38 | 0.00 | 5.7 | 94.3 | 0.0 | -1.60 | 0.81 | 0.60 | 0.33 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 16.04 | 0.00 | 1.878 | 11.88 | 2.22 | 6.0 | 94.0 | 0.0 | -0.40 | 1.66 | 0.86 | 0.74 | 1.32 | 13957 | 898 | 4 | 0 | 2 | 0 | 6917 | logfile |
✔ | 7NT6 | 12584 | 2024-03-19 | 2021-03-09 | 4.3 | 4.34 | 3.99 | 3.3 | 0.012 | 2.07 | 0.0 | 0.15 | 12.20 | 0.01 | 2.119 | 1.13 | 0.00 | 4.0 | 95.6 | 0.3 | -2.44 | 0.72 | 0.76 | — | 3.2 | 0.004 | 0.78 | 0.0 | 0.06 | 12.44 | 0.00 | 2.090 | 5.43 | 0.00 | 8.3 | 91.6 | 0.0 | 1.02 | 0.72 | 0.71 | 0.78 | — | 24128 | 5582 | 17 | 90 | 0 | 0 | 0 | logfile |
✔ | 7MR1 | 23953 | 2024-03-17 | 2021-05-07 | 4.2 | 4.74 | — | 4.6 | 0.003 | 0.78 | 0.0 | 0.05 | 14.91 | 0.01 | 2.237 | 5.74 | 0.00 | 5.5 | 94.5 | 0.0 | -1.78 | 0.85 | 0.84 | — | 4.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.83 | 0.00 | 2.185 | 10.10 | 0.00 | 5.6 | 94.3 | 0.0 | -0.25 | 0.34 | 0.85 | 0.83 | — | 18473 | 2316 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MHW | 9120 | 2024-03-22 | 2018-09-18 | 4.0 | 4.10 | 3.97 | 4.0 | 0.004 | 0.62 | 0.0 | 0.13 | 7.02 | 0.00 | 1.933 | 7.04 | 0.00 | 3.4 | 96.6 | 0.0 | -2.09 | 0.79 | 0.77 | — | 4.0 | 0.003 | 0.66 | 0.0 | 0.12 | 12.97 | 0.00 | 1.915 | 10.28 | 0.94 | 4.7 | 95.3 | 0.0 | 1.78 | 1.49 | 0.79 | 0.79 | — | 34414 | 2452 | 4 | 0 | 0 | 0 | 16514 | logfile |
✔ | 6PA7 | 20281 | 2024-03-18 | 2019-06-11 | 2.94 | 3.31 | — | 3.1 | 0.005 | 0.80 | 0.0 | 0.05 | 23.62 | 0.01 | 2.304 | 3.72 | 0.00 | 3.1 | 96.9 | 0.0 | -2.99 | 0.80 | 0.77 | 2.57 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 25.76 | 0.00 | 2.105 | 12.09 | 2.93 | 3.9 | 96.1 | 0.0 | 0.55 | 0.86 | 0.82 | 0.83 | 2.91 | 21019 | 1770 | 19 | 332 | 3 | 0 | 0 | logfile |
✔ | 6ZGJ | 11208 | 2024-03-15 | 2020-06-18 | 3.4 | 3.39 | 3.34 | 3.5 | 0.005 | 0.61 | 0.0 | 0.04 | 12.36 | 0.00 | 2.192 | 9.66 | 0.00 | 6.3 | 93.7 | 0.0 | -1.35 | 0.69 | 0.79 | 3.10 | 3.5 | 0.004 | 0.61 | 0.0 | 0.04 | 14.41 | 0.00 | 2.213 | 7.04 | 2.65 | 6.0 | 94.0 | 0.0 | -0.87 | 0.42 | 0.71 | 0.85 | 2.58 | 11555 | 1540 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WTG | 32785 | 2024-03-10 | 2022-02-04 | 3.8 | 3.93 | — | 3.9 | 0.006 | 1.20 | 0.0 | 0.07 | 14.44 | 0.01 | 2.297 | 4.61 | 0.00 | 9.1 | 90.9 | 0.0 | -2.94 | 0.67 | 0.73 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3318 | 425 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JW0 | 22512 | 2024-03-20 | 2020-08-24 | 4.3 | 4.63 | 4.41 | 4.4 | 0.010 | 1.54 | 6.0 | 0.10 | 9.60 | 0.01 | 2.527 | 0.37 | 0.00 | 2.3 | 97.5 | 0.1 | 1.05 | 0.81 | 0.71 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.05 | 9.55 | 0.00 | 2.160 | 5.46 | 0.00 | 3.3 | 96.7 | 0.0 | 0.04 | 1.29 | 0.85 | 0.79 | — | 26251 | 4314 | 27 | 0 | 69 | 0 | 0 | logfile |
✔ | 6B3Q | 7041 | 2024-03-16 | 2017-09-22 | 3.7 | 3.84 | 3.74 | 3.7 | 0.005 | 1.03 | 0.0 | 0.06 | 12.29 | 0.01 | 2.212 | 4.06 | 0.00 | 2.6 | 97.4 | 0.0 | -4.53 | 0.80 | 0.78 | 1.51 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 15.75 | 0.00 | 2.161 | 13.17 | 2.93 | 4.8 | 95.2 | 0.0 | -0.64 | 0.84 | 0.82 | 0.80 | 1.61 | 15727 | 1929 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2024-03-10 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.003 | 0.64 | 0.0 | 0.05 | 15.65 | 0.00 | 2.268 | 13.24 | 8.85 | 16.0 | 84.0 | 0.0 | -4.39 | 2.81 | 0.38 | 0.75 | 3.16 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PDD | 13334 | 2024-03-10 | 2021-08-05 | 4.2 | 4.47 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.04 | 14.38 | 0.00 | 2.092 | 20.92 | 0.00 | 7.1 | 92.9 | 0.0 | -4.11 | 0.79 | 0.75 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.05 | 13.76 | 0.00 | 2.144 | 16.89 | 0.00 | 6.0 | 94.0 | 0.0 | -1.17 | 0.88 | 0.78 | 0.74 | — | 4516 | 577 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Fo0 | 4286 | 2024-03-12 | 2018-02-05 | 4.1 | 4.16 | 2.43 | 4.1 | 0.012 | 0.96 | 0.0 | 0.05 | 9.17 | 0.01 | 2.040 | 5.54 | 0.00 | 10.2 | 89.8 | 0.1 | -4.55 | 0.72 | 0.79 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.43 | 0.00 | 1.933 | 9.89 | 0.00 | 5.3 | 94.7 | 0.0 | -0.90 | 2.41 | 0.74 | 0.81 | — | 61356 | 3910 | 24 | 0 | 8 | 0 | 30362 | logfile |
✔ | 8EJG | 28181 | 2024-03-14 | 2022-09-16 | 3.13 | 3.83 | 3.14 | 3.5 | 0.025 | 1.94 | 3.0 | 0.17 | 20.95 | 0.01 | 2.106 | 0.88 | 0.00 | 6.4 | 93.6 | 0.0 | -1.09 | 0.86 | 0.81 | 3.20 | 3.5 | 0.004 | 0.94 | 0.0 | 0.05 | 14.22 | 0.00 | 2.254 | 10.91 | 2.07 | 8.3 | 91.3 | 0.4 | -0.99 | 1.51 | 0.86 | 0.81 | 2.84 | 9966 | 1083 | 36 | 0 | 102 | 0 | 0 | logfile |
✔ | 7Z2D | 14462 | 2024-03-11 | 2022-02-26 | 3.38 | 3.18 | 3.47 | 3.3 | 0.006 | 0.65 | 0.0 | 0.04 | 16.45 | 0.02 | 2.187 | 7.33 | 0.00 | 3.9 | 96.1 | 0.0 | -0.02 | 0.60 | 0.69 | 2.73 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 18.12 | 0.01 | 2.229 | 9.69 | 1.28 | 4.5 | 95.5 | 0.0 | -0.09 | 0.36 | 0.60 | 0.72 | 2.52 | 8591 | 959 | 4 | 36 | 1 | 0 | 0 | logfile |
✔ | 7WWV | 32874 | 2024-03-19 | 2022-02-14 | 3.2 | 3.31 | — | 3.3 | 0.002 | 0.57 | 0.0 | 0.04 | 16.78 | 0.00 | 2.204 | 6.39 | 0.00 | 8.4 | 91.3 | 0.2 | -0.65 | 0.74 | 0.80 | 2.46 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 18.38 | 0.00 | 2.043 | 7.69 | 2.56 | 9.6 | 90.2 | 0.2 | -0.71 | 1.45 | 0.75 | 0.83 | 2.49 | 19622 | 2233 | 11 | 117 | 0 | 0 | 0 | logfile |
✔ | 7oSL | 13054 | 2024-03-25 | 2021-06-09 | 3.1 | 2.94 | 3.08 | 3.1 | 0.010 | 1.26 | 0.0 | 0.07 | 12.14 | 0.01 | 2.374 | 0.44 | 0.00 | 1.3 | 98.7 | 0.0 | -2.09 | 0.61 | 0.67 | 2.20 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 14.71 | 0.00 | 2.191 | 2.97 | 0.70 | 2.2 | 97.8 | 0.0 | 0.96 | 0.71 | 0.73 | 0.79 | 2.02 | 47885 | 2935 | 9 | 0 | 0 | 0 | 24225 | logfile |
✔ | 7KEJ | 22839 | 2024-03-16 | 2020-10-11 | 3.8 | 3.55 | — | 3.6 | 0.021 | 1.73 | 0.0 | 0.11 | 11.82 | 0.01 | 1.201 | 0.59 | 0.00 | 0.4 | 99.6 | 0.0 | 1.20 | 0.82 | 0.84 | 4.49 | 3.4 | 0.005 | 0.67 | 0.0 | 0.04 | 14.45 | 0.00 | 2.113 | 6.56 | 2.14 | 2.7 | 97.3 | 0.0 | -0.17 | 1.66 | 0.82 | 0.83 | 3.76 | 13806 | 1740 | 18 | 0 | 24 | 0 | 0 | logfile |
✔ | 6KZ4 | 0785 | 2024-03-17 | 2019-09-23 | 3.0 | 3.18 | — | 3.1 | 0.005 | 0.64 | 0.0 | 0.05 | 13.57 | 0.00 | 2.170 | 10.13 | 0.00 | 9.5 | 90.5 | 0.0 | -4.51 | 0.80 | 0.86 | 2.99 | 3.1 | 0.004 | 0.66 | 0.0 | 0.05 | 15.66 | 0.00 | 2.151 | 9.87 | 2.62 | 9.8 | 90.2 | 0.0 | -2.04 | 1.42 | 0.79 | 0.87 | 3.08 | 16698 | 2196 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X5i | 22051 | 2024-03-11 | 2020-05-26 | 4.3 | 4.27 | — | 4.0 | 0.060 | 2.79 | 0.0 | 0.16 | 29.93 | 0.00 | 2.206 | 29.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.70 | — | 4.0 | 0.011 | 1.53 | 0.0 | 0.13 | 24.62 | 0.00 | 1.571 | 57.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.30 | 0.69 | 0.74 | — | 4480 | 70 | 70 | 0 | 280 | 0 | 0 | logfile |