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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PEM | 20316 | 2024-04-05 | 2019-06-20 | 3.5 | 3.59 | — | 3.5 | 0.007 | 0.93 | 1.0 | 0.06 | 13.99 | 0.01 | 2.238 | 2.98 | 0.39 | 3.5 | 96.4 | 0.0 | -5.10 | 0.82 | 0.89 | 2.08 | 3.5 | 0.003 | 0.63 | 1.0 | 0.04 | 15.78 | 0.00 | 2.057 | 6.30 | 2.79 | 3.3 | 96.7 | 0.0 | -0.54 | 1.77 | 0.82 | 0.89 | 1.73 | 108033 | 13503 | 74 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WB1 | 32392 | 2024-04-07 | 2021-12-15 | 3.7 | 3.09 | — | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 22.13 | 0.00 | 2.046 | 11.12 | 0.00 | 4.7 | 95.2 | 0.1 | 0.55 | 0.83 | 0.75 | 0.94 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 22.69 | 0.00 | 2.078 | 13.08 | 1.67 | 4.7 | 95.3 | 0.0 | 0.68 | 1.01 | 0.83 | 0.76 | 1.39 | 11524 | 960 | 4 | 178 | 0 | 0 | 0 | logfile |
✔ | 6CG0 | 7470 | 2024-04-10 | 2018-02-19 | 3.17 | 3.69 | — | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 20.18 | 0.00 | 2.205 | 15.24 | 4.08 | 2.5 | 97.4 | 0.1 | -2.47 | 0.91 | 0.85 | 3.15 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 20.42 | 0.00 | 2.162 | 7.67 | 1.17 | 2.0 | 98.0 | 0.0 | 0.51 | 0.52 | 0.93 | 0.88 | 2.92 | 20080 | 1989 | 13 | 212 | 4 | 0 | 0 | logfile |
✔ | 6WCC | 21606 | 2024-04-07 | 2020-03-30 | 3.24 | 3.27 | — | 3.3 | 0.003 | 0.51 | 0.0 | 0.03 | 15.73 | 0.00 | 2.025 | 4.39 | 2.26 | 0.8 | 99.2 | 0.0 | 1.46 | 0.53 | 0.76 | 1.58 | 3.3 | 0.003 | 0.50 | 0.0 | 0.03 | 16.07 | 0.00 | 2.212 | 7.31 | 3.06 | 2.3 | 97.7 | 0.0 | 4.51 | 0.73 | 0.51 | 0.78 | 1.73 | 11629 | 734 | 6 | 0 | 5 | 12 | 5908 | logfile |
✔ | 6WCA | 21604 | 2024-04-07 | 2020-03-30 | 3.03 | 3.15 | — | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 15.59 | 0.00 | 2.102 | 8.00 | 1.94 | 3.0 | 97.0 | 0.0 | -0.15 | 0.54 | 0.77 | 2.04 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 15.84 | 0.00 | 1.818 | 6.45 | 2.58 | 2.3 | 97.7 | 0.0 | 3.27 | 0.60 | 0.53 | 0.80 | 2.12 | 11645 | 734 | 6 | 0 | 5 | 26 | 5910 | logfile |
✔ | 7F8W | 31494 | 2024-04-06 | 2021-07-02 | 3.1 | 2.94 | — | 3.2 | 0.005 | 1.04 | 0.0 | 0.06 | 14.09 | 0.01 | 2.273 | 8.70 | 0.00 | 4.6 | 95.4 | 0.0 | -1.99 | 0.54 | 0.58 | 1.20 | 3.1 | 0.003 | 0.73 | 0.0 | 0.04 | 16.12 | 0.00 | 2.039 | 18.93 | 3.37 | 5.1 | 94.9 | 0.0 | -0.78 | 1.22 | 0.58 | 0.65 | 0.69 | 8486 | 1087 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LNC | 0930 | 2024-04-13 | 2019-12-28 | 3.21 | 3.30 | — | 3.3 | 0.009 | 1.17 | 0.0 | 0.07 | 14.41 | 0.01 | 1.550 | 5.55 | 0.20 | 10.3 | 89.7 | 0.0 | -4.69 | 0.73 | 0.80 | 3.39 | 3.3 | 0.004 | 0.77 | 1.0 | 0.04 | 15.53 | 0.00 | 1.998 | 8.82 | 2.23 | 7.8 | 92.2 | 0.0 | -1.94 | 0.47 | 0.72 | 0.82 | 2.56 | 28937 | 3447 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 7SMM | 25202 | 2024-04-09 | 2021-10-26 | 2.5 | 2.86 | — | 2.7 | 0.006 | 0.78 | 0.0 | 0.05 | 16.09 | 0.00 | 2.099 | 3.47 | 0.00 | 4.1 | 95.9 | 0.0 | 1.36 | 0.80 | 0.86 | 4.48 | 2.7 | 0.003 | 0.49 | 0.0 | 0.04 | 14.99 | 0.00 | 2.258 | 5.18 | 1.17 | 3.4 | 96.6 | 0.0 | 1.82 | 0.29 | 0.81 | 0.88 | 4.04 | 17256 | 2030 | 20 | 0 | 39 | 63 | 0 | logfile |
✔ | 6W8P | 21577 | 2024-04-06 | 2020-03-21 | 3.6 | 4.05 | — | 4.0 | 0.004 | 0.76 | 0.0 | 0.04 | 18.04 | 0.00 | 2.236 | 14.92 | 10.89 | 10.4 | 89.6 | 0.0 | -3.47 | 0.57 | 0.80 | 0.57 | 4.0 | 0.004 | 0.78 | 0.0 | 0.04 | 18.26 | 0.00 | 2.179 | 13.76 | 9.17 | 9.9 | 90.1 | 0.0 | -0.09 | 1.53 | 0.56 | 0.78 | 0.44 | 6509 | 844 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7N8X | 24248 | 2024-04-06 | 2021-06-16 | 3.4 | 3.65 | — | 3.6 | 0.003 | 0.73 | 0.0 | 0.05 | 13.27 | 0.01 | 2.153 | 9.30 | 0.00 | 10.1 | 89.3 | 0.6 | -1.42 | 0.64 | 0.67 | 2.57 | 3.6 | 0.003 | 0.67 | 0.0 | 0.05 | 15.94 | 0.01 | 2.146 | 9.60 | 2.52 | 9.6 | 89.9 | 0.5 | -0.97 | 0.45 | 0.66 | 0.70 | 1.94 | 6617 | 831 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZT | 24777 | 2024-04-05 | 2021-08-27 | 2.35 | 2.27 | — | 2.1 | 0.005 | 0.32 | 0.0 | 0.03 | 14.89 | 0.00 | 2.388 | 3.83 | 0.00 | 2.9 | 97.1 | 0.0 | 2.81 | 0.77 | 0.79 | 2.62 | 2.0 | 0.003 | 0.32 | 0.0 | 0.03 | 15.53 | 0.00 | 2.337 | 5.44 | 0.35 | 0.0 | 100.0 | 0.0 | 6.28 | 0.23 | 0.80 | 0.83 | 2.93 | 2451 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BXU | 30238 | 2024-04-08 | 2020-04-20 | 3.7 | 3.82 | — | 3.8 | 0.008 | 1.17 | 2.0 | 0.07 | 11.21 | 0.01 | 2.267 | 7.78 | 0.43 | 8.8 | 91.2 | 0.0 | -4.33 | 0.73 | 0.87 | 3.01 | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 14.03 | 0.00 | 2.251 | 5.52 | 1.74 | 7.4 | 92.6 | 0.1 | -0.76 | 0.53 | 0.70 | 0.86 | 2.16 | 13444 | 1752 | 6 | 0 | 14 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2024-04-05 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 26.31 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.89 | 0.0 | 0.04 | 27.66 | 0.01 | 1.797 | 37.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.86 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 7SWo | 25477 | 2024-04-05 | 2021-11-20 | 4.1 | 3.78 | — | 3.8 | 0.007 | 0.89 | 0.0 | 0.05 | 14.43 | 0.01 | 2.215 | 26.02 | 0.19 | 10.0 | 90.0 | 0.0 | -2.59 | 0.65 | 0.76 | — | 3.8 | 0.003 | 0.73 | 0.0 | 0.05 | 14.01 | 0.01 | 2.123 | 17.73 | 0.00 | 6.0 | 94.0 | 0.0 | -1.21 | 0.52 | 0.64 | 0.75 | — | 4784 | 627 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WTC | 32778 | 2024-04-13 | 2022-02-04 | 4.0 | 4.61 | — | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.85 | 0.01 | 2.060 | 22.27 | 0.10 | 8.0 | 92.0 | 0.1 | -0.78 | 0.86 | 0.65 | — | 3.1 | 0.004 | 0.77 | 0.0 | 0.05 | 15.91 | 0.00 | 2.079 | 25.30 | 2.42 | 8.6 | 91.4 | 0.0 | -1.19 | 0.59 | 0.87 | 0.68 | — | 28418 | 3661 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2024-04-15 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.00 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UX4 | 20929 | 2024-04-08 | 2019-11-06 | 3.5 | 3.60 | — | 3.6 | 0.011 | 0.83 | 0.0 | 0.06 | 13.47 | 0.01 | 2.254 | 3.37 | 0.29 | 3.9 | 96.1 | 0.0 | -4.46 | 0.67 | 0.83 | 2.86 | 3.6 | 0.004 | 0.50 | 0.0 | 0.05 | 15.04 | 0.00 | 2.154 | 6.14 | 1.89 | 3.6 | 96.4 | 0.0 | 0.21 | 1.17 | 0.67 | 0.83 | 2.28 | 13257 | 1776 | 19 | 0 | 24 | 3 | 0 | logfile |
✔ | 6P25 | 20236 | 2024-04-07 | 2019-05-21 | 3.2 | 3.30 | — | 3.3 | 0.010 | 1.47 | 0.0 | 0.06 | 13.31 | 0.01 | 2.221 | 8.69 | 0.40 | 6.7 | 93.3 | 0.0 | -4.48 | 0.59 | 0.77 | 3.51 | 3.3 | 0.004 | 0.95 | 0.0 | 0.04 | 14.93 | 0.00 | 2.101 | 11.73 | 2.26 | 5.6 | 94.4 | 0.0 | -0.11 | 0.60 | 0.66 | 0.85 | 2.83 | 11739 | 1424 | 5 | 0 | 6 | 0 | 0 | logfile |
✔ | 7WTB | 32775 | 2024-04-13 | 2022-02-04 | 3.7 | 4.54 | — | 3.7 | 0.008 | 0.92 | 2.0 | 0.05 | 14.94 | 0.00 | 2.109 | 10.11 | 1.76 | 6.9 | 92.9 | 0.2 | 0.09 | 0.89 | 0.74 | 0.45 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 15.86 | 0.00 | 2.085 | 13.87 | 2.19 | 7.3 | 92.6 | 0.1 | 0.03 | 1.43 | 0.91 | 0.82 | 1.07 | 28480 | 3661 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7DH0 | 30677 | 2024-04-06 | 2020-11-12 | 4.2 | 4.70 | — | 4.5 | 0.007 | 1.28 | 0.0 | 0.06 | 11.58 | 0.01 | 1.514 | 6.99 | 0.60 | 16.3 | 83.1 | 0.6 | -5.67 | 0.84 | 0.72 | — | 4.5 | 0.003 | 0.82 | 0.0 | 0.04 | 12.26 | 0.00 | 2.093 | 12.72 | 0.02 | 14.2 | 85.6 | 0.2 | -2.90 | 0.80 | 0.85 | 0.73 | — | 60091 | 7904 | 57 | 0 | 17 | 0 | 0 | logfile |