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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DQX | 27663 | 2024-04-17 | 2022-07-20 | 2.1 | 2.94 | 2.16 | 2.7 | 0.008 | 0.68 | 0.0 | 0.04 | 17.32 | 0.00 | 1.878 | 4.91 | 1.26 | 2.0 | 98.0 | 0.0 | 1.11 | 0.79 | 0.75 | 4.56 | 2.7 | 0.003 | 0.52 | 0.0 | 0.04 | 17.06 | 0.00 | 1.757 | 4.25 | 0.95 | 1.4 | 98.6 | 0.0 | 1.94 | 0.67 | 0.80 | 0.88 | 4.42 | 43173 | 2598 | 26 | 27 | 8 | 866 | 21143 | logfile |
✔ | 6D8C | 7831 | 2024-04-17 | 2018-04-26 | 3.54 | 3.63 | 3.43 | 3.6 | 0.006 | 0.82 | 0.0 | 0.05 | 11.95 | 0.01 | 1.816 | 9.56 | 0.85 | 2.9 | 97.1 | 0.0 | -2.35 | 0.60 | 0.78 | 2.62 | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 15.83 | 0.00 | 1.806 | 8.83 | 2.82 | 5.5 | 94.5 | 0.0 | 0.31 | 1.65 | 0.62 | 0.82 | 2.42 | 39181 | 2476 | 18 | 0 | 10 | 0 | 19516 | logfile |
✔ | 7WTo | 32793 | 2024-04-17 | 2022-02-05 | 3.5 | 3.41 | — | 3.3 | 0.005 | 0.84 | 0.0 | 0.04 | 22.20 | 0.01 | 2.105 | 6.35 | 0.05 | 7.9 | 92.0 | 0.1 | -2.03 | 0.85 | 0.84 | 2.16 | 3.3 | 0.006 | 0.74 | 0.0 | 0.04 | 22.19 | 0.01 | 2.066 | 11.99 | 2.71 | 10.1 | 89.7 | 0.2 | -1.16 | 0.32 | 0.85 | 0.84 | 2.03 | 44490 | 2383 | 17 | 1200 | 1 | 0 | 0 | logfile |
✔ | 7Z1M | 14448 | 2024-04-17 | 2022-02-24 | 3.4 | 3.57 | 3.50 | 3.5 | 0.004 | 0.69 | 0.0 | 0.05 | 15.31 | 0.00 | 2.100 | 4.76 | 0.00 | 3.3 | 96.7 | 0.0 | -0.32 | 0.88 | 0.84 | 2.45 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 16.52 | 0.00 | 2.024 | 7.93 | 1.10 | 3.0 | 96.9 | 0.0 | 0.45 | 0.29 | 0.89 | 0.86 | 2.15 | 42122 | 5153 | 26 | 53 | 10 | 0 | 0 | logfile |
✔ | 3JAR | 6351 | 2024-04-17 | 2015-06-19 | 3.4 | 3.64 | — | 3.6 | 0.008 | 1.38 | 6.0 | 0.08 | 16.19 | 0.01 | 1.923 | 1.68 | 1.82 | 2.6 | 97.2 | 0.2 | 0.27 | 0.69 | 0.87 | 3.14 | 3.6 | 0.004 | 0.67 | 1.0 | 0.04 | 16.76 | 0.00 | 1.897 | 7.39 | 2.18 | 2.2 | 97.8 | 0.0 | 1.21 | 1.51 | 0.66 | 0.87 | 2.60 | 43024 | 5428 | 26 | 6 | 12 | 0 | 0 | logfile |
✔ | 6W7N | 21572 | 2024-04-17 | 2020-03-19 | 3.4 | 3.72 | — | 3.6 | 0.002 | 0.46 | 0.0 | 0.03 | 22.81 | 0.00 | 1.907 | 8.12 | 0.08 | 8.2 | 91.5 | 0.3 | -4.03 | 0.78 | 0.78 | 1.44 | 3.6 | 0.007 | 0.78 | 0.0 | 0.04 | 23.04 | 0.01 | 2.075 | 13.25 | 5.28 | 12.6 | 87.0 | 0.4 | -2.52 | 1.26 | 0.81 | 0.83 | 1.34 | 42287 | 1660 | 15 | 1372 | 0 | 0 | 0 | logfile |
✘ | 8SR1 | 40717 | 2024-04-17 | 2023-05-05 | 2.18 | 2.37 | 2.20 | 2.3 | 0.009 | 1.11 | 0.0 | 0.05 | 22.92 | 0.01 | 1.795 | 20.32 | 3.93 | 6.0 | 93.5 | 0.5 | 0.61 | 0.68 | 0.66 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22854 | 2577 | 27 | 0 | 66 | 351 | 0 | logfile |
✔ | 8P4C | 17405 | 2024-04-17 | 2023-05-20 | 3.8 | 4.28 | 2.98 | 3.0 | 0.005 | 0.84 | 2.0 | 0.05 | 15.21 | 0.01 | 0.317 | 21.26 | 0.43 | 5.1 | 94.8 | 0.1 | -1.21 | 0.80 | 0.66 | 1.13 | 3.1 | 0.003 | 0.69 | 0.0 | 0.04 | 16.36 | 0.00 | 2.050 | 14.85 | 1.58 | 5.3 | 94.7 | 0.0 | -0.16 | 2.36 | 0.88 | 0.85 | 1.79 | 41439 | 4953 | 20 | 90 | 4 | 0 | 0 | logfile |
✔ | 6RoW | 4975 | 2024-04-17 | 2019-05-13 | 4.5 | 4.52 | 4.16 | 4.2 | 0.016 | 1.50 | 0.0 | 0.07 | 14.46 | 0.01 | 1.848 | 49.61 | 0.00 | 30.3 | 68.7 | 1.0 | -6.95 | 0.81 | 0.74 | — | 4.2 | 0.004 | 0.68 | 0.0 | 0.04 | 13.65 | 0.00 | 1.945 | 13.20 | 0.05 | 14.3 | 85.5 | 0.1 | -2.60 | 1.48 | 0.82 | 0.73 | — | 43049 | 3129 | 7 | 0 | 0 | 0 | 20156 | logfile |
✘ | 8SNH | 40625 | 2024-04-17 | 2023-04-27 | 2.7 | 2.39 | 2.83 | 2.4 | 0.007 | 0.83 | 1.0 | 0.06 | 17.82 | 0.00 | 1.908 | 10.56 | 1.04 | 2.9 | 97.0 | 0.1 | 0.51 | 0.73 | 0.83 | 4.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43557 | 2992 | 24 | 0 | 24 | 0 | 19392 | logfile |
✔ | 8TDK | 41165 | 2024-04-17 | 2023-07-03 | 3.5 | 4.42 | 3.27 | 3.9 | 0.002 | 0.43 | 0.0 | 0.04 | 12.43 | 0.00 | 2.153 | 4.71 | 0.00 | 2.0 | 98.0 | 0.0 | 5.24 | 0.64 | 0.76 | 1.85 | 3.9 | 0.003 | 0.48 | 0.0 | 0.04 | 12.57 | 0.00 | 2.101 | 8.68 | 2.01 | 2.1 | 97.9 | 0.0 | 4.79 | 1.28 | 0.65 | 0.77 | 2.92 | 41622 | 3269 | 7 | 0 | 0 | 0 | 19348 | logfile |
✔ | 8PDZ | 17627 | 2024-04-17 | 2023-06-13 | 3.32 | 4.72 | 3.29 | 3.4 | 0.002 | 0.60 | 0.0 | 0.05 | 15.29 | 0.00 | 2.267 | 8.76 | 0.00 | 1.8 | 98.2 | 0.0 | 0.84 | 0.85 | 0.72 | 2.03 | 3.4 | 0.004 | 0.58 | 0.0 | 0.05 | 13.92 | 0.00 | 2.105 | 8.60 | 3.21 | 5.6 | 94.4 | 0.0 | 0.46 | 1.25 | 0.91 | 0.86 | 1.73 | 42560 | 3164 | 28 | 0 | 0 | 0 | 20272 | logfile |
✔ | 6UZE | 20958 | 2024-04-17 | 2019-11-15 | 3.4 | 3.54 | — | 3.4 | 0.010 | 0.96 | 3.0 | 0.06 | 15.55 | 0.01 | 2.243 | 6.98 | 0.77 | 7.9 | 92.0 | 0.1 | -4.13 | 0.78 | 0.85 | 2.93 | 3.5 | 0.002 | 0.54 | 0.0 | 0.04 | 16.06 | 0.00 | 2.194 | 8.65 | 1.41 | 4.2 | 95.8 | 0.0 | -1.08 | 0.45 | 0.77 | 0.85 | 2.49 | 42822 | 5374 | 16 | 0 | 14 | 0 | 0 | logfile |
✔ | 7Y4W | 33608 | 2024-04-17 | 2022-06-16 | 3.67 | 4.29 | 3.79 | 4.1 | 0.002 | 0.62 | 0.0 | 0.04 | 14.25 | 0.00 | 2.137 | 8.86 | 0.00 | 8.1 | 91.4 | 0.4 | 0.01 | 0.79 | 0.81 | 1.11 | 4.1 | 0.002 | 0.63 | 0.0 | 0.04 | 15.85 | 0.00 | 2.125 | 9.53 | 1.28 | 7.8 | 91.7 | 0.4 | 0.06 | 1.16 | 0.79 | 0.81 | 1.06 | 42776 | 5385 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 6i84 | 4429 | 2024-04-17 | 2018-11-19 | 4.4 | 8.42 | 4.46 | 3.4 | 0.008 | 1.11 | 0.0 | 0.06 | 22.28 | 0.01 | 2.063 | 11.17 | 0.79 | 11.8 | 88.2 | 0.1 | -4.33 | 0.79 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43988 | 4665 | 29 | 337 | 9 | 0 | 0 | logfile |
✔ | 6UiX | 20790 | 2024-04-17 | 2019-10-01 | 3.5 | 4.38 | — | 3.7 | 0.009 | 0.96 | 0.0 | 0.05 | 13.69 | 0.01 | 2.204 | 8.14 | 0.00 | 4.0 | 96.0 | 0.0 | -3.80 | 0.68 | 0.83 | 1.92 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 14.61 | 0.00 | 2.269 | 12.16 | 1.90 | 2.8 | 97.2 | 0.0 | 2.59 | 1.51 | 0.68 | 0.83 | 1.83 | 44198 | 6050 | 22 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DR0 | 27667 | 2024-04-17 | 2022-07-20 | 2.42 | 3.22 | 2.49 | 3.0 | 0.008 | 0.56 | 0.0 | 0.04 | 17.94 | 0.00 | 2.058 | 3.70 | 1.04 | 1.4 | 98.6 | 0.0 | 2.09 | 0.87 | 0.85 | 3.77 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 17.94 | 0.00 | 1.919 | 4.56 | 0.91 | 1.9 | 98.1 | 0.0 | 1.83 | 1.78 | 0.80 | 0.86 | 3.73 | 42882 | 2608 | 15 | 41 | 8 | 0 | 21368 | logfile |
✔ | 8oEV | 16837 | 2024-04-17 | 2023-03-13 | 2.86 | 3.13 | — | 2.8 | 0.005 | 0.80 | 0.0 | 0.05 | 15.54 | 0.01 | 2.005 | 8.92 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.77 | 0.77 | 2.15 | 2.9 | 0.004 | 0.66 | 0.0 | 0.04 | 17.30 | 0.00 | 2.008 | 12.40 | 1.13 | 3.5 | 96.5 | 0.0 | 0.32 | 1.61 | 0.78 | 0.80 | 1.92 | 41781 | 5005 | 25 | 77 | 9 | 0 | 0 | logfile |
✘ | 5ZJi | 6932 | 2024-04-17 | 2018-03-20 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44708 | 4087 | 40 | 0 | 271 | 0 | 0 | logfile |
✘ | 6H05 | 0108 | 2024-04-17 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.80 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |