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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8SXA | 40829 | 2024-04-10 | 2023-05-20 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18596 | 1153 | 1 | 0 | 0 | 0 | 9418 | logfile |
✘ | 8SX9 | 40828 | 2024-04-10 | 2023-05-20 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18596 | 1153 | 1 | 0 | 0 | 0 | 9418 | logfile |
✔ | 8DY6 | 27776 | 2024-04-10 | 2022-08-03 | 4.32 | 4.84 | 4.16 | 4.2 | 0.006 | 0.97 | 0.0 | 0.06 | 19.23 | 0.01 | 2.266 | 4.49 | 0.00 | 4.4 | 95.4 | 0.2 | -1.13 | 0.82 | 0.86 | — | 4.2 | 0.005 | 0.69 | 0.0 | 0.04 | 13.03 | 0.00 | 2.101 | 15.16 | 0.00 | 5.3 | 94.6 | 0.0 | -0.42 | 0.34 | 0.83 | 0.88 | — | 20778 | 2445 | 54 | 0 | 132 | 0 | 0 | logfile |
✔ | 8iXF | 35792 | 2024-04-12 | 2023-03-31 | 4.4 | 3.03 | 4.38 | 4.2 | 0.008 | 0.88 | 0.0 | 0.05 | 14.16 | 0.00 | 2.115 | 3.57 | 2.75 | 2.1 | 97.9 | 0.0 | -4.05 | 0.52 | 0.64 | — | 3.0 | 0.003 | 0.74 | 0.0 | 0.05 | 13.38 | 0.00 | 2.037 | 18.09 | 0.03 | 3.8 | 96.2 | 0.0 | -0.67 | 2.10 | 0.55 | 0.67 | — | 84087 | 10602 | 45 | 0 | 27 | 0 | 0 | logfile |
✔ | 8SAL | 40273 | 2024-04-10 | 2023-04-01 | 4.9 | 5.54 | 4.74 | 5.0 | 0.005 | 0.89 | 0.0 | 0.05 | 13.67 | 0.01 | 2.065 | 4.56 | 0.00 | 8.4 | 91.4 | 0.1 | -2.31 | 0.76 | 0.70 | — | 4.9 | 0.006 | 0.97 | 0.0 | 0.05 | 13.56 | 0.01 | 1.992 | 37.35 | 0.00 | 11.1 | 88.7 | 0.2 | -2.29 | 2.71 | 0.80 | 0.79 | — | 18435 | 2343 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L7H | 23212 | 2024-04-05 | 2020-12-28 | 4.0 | 2.39 | — | 4.0 | 0.008 | 1.47 | 0.0 | 0.08 | 15.10 | 0.01 | 2.199 | 13.87 | 3.53 | 36.3 | 63.7 | 0.0 | -6.00 | 0.47 | 0.60 | — | 4.0 | 0.005 | 0.96 | 0.0 | 0.06 | 16.99 | 0.00 | 2.068 | 20.90 | 16.08 | 31.5 | 68.5 | 0.0 | -5.06 | 0.73 | 0.51 | 0.66 | — | 2430 | 352 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZRZ | 14923 | 2024-04-06 | 2022-05-05 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 8CDV | 16596 | 2024-04-17 | 2023-02-01 | 4.73 | 3.73 | 4.59 | 3.7 | 0.009 | 1.44 | 2.0 | 0.11 | 24.69 | 0.02 | 1.187 | 13.24 | 3.68 | 3.0 | 96.0 | 0.9 | -1.91 | 0.67 | 0.66 | — | 3.6 | 0.002 | 0.61 | 0.0 | 0.04 | 23.46 | 0.00 | 2.081 | 16.47 | 0.11 | 2.4 | 97.4 | 0.2 | 0.34 | 1.23 | 0.66 | 0.61 | — | 43593 | 2094 | 19 | 1258 | 0 | 0 | 0 | logfile |
✔ | 8C1C | 16378 | 2024-04-10 | 2022-12-20 | 4.1 | 5.17 | 4.18 | 4.0 | 0.008 | 1.21 | 1.0 | 0.06 | 14.93 | 0.01 | 2.072 | 2.46 | 0.00 | 3.2 | 96.7 | 0.2 | -0.23 | 0.87 | 0.71 | — | 4.0 | 0.004 | 0.65 | 0.0 | 0.04 | 12.69 | 0.00 | 1.867 | 14.14 | 0.00 | 6.2 | 93.8 | 0.0 | -0.01 | 1.56 | 0.88 | 0.75 | — | 19267 | 1237 | 13 | 0 | 28 | 0 | 9284 | logfile |
✔ | 7WLB | 32580 | 2024-04-07 | 2022-01-12 | 4.1 | 3.63 | — | 3.5 | 0.002 | 0.44 | 0.0 | 0.04 | 8.68 | 0.00 | 2.205 | 6.88 | 3.92 | 4.5 | 95.5 | 0.0 | -4.05 | 0.74 | 0.72 | — | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 11.24 | 0.00 | 2.157 | 18.00 | 0.00 | 6.4 | 93.5 | 0.1 | -0.65 | 1.45 | 0.75 | 0.75 | — | 10193 | 1327 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iLQ | 35540 | 2024-04-06 | 2023-03-04 | 4.3 | 4.22 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.05 | 18.13 | 0.00 | 2.208 | 9.06 | 0.23 | 13.1 | 86.7 | 0.2 | -2.78 | 0.53 | 0.74 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 13.70 | 0.00 | 2.167 | 7.89 | 0.12 | 14.8 | 84.6 | 0.6 | -3.00 | 0.45 | 0.54 | 0.82 | — | 7729 | 1010 | 5 | 0 | 6 | 0 | 0 | logfile |
✘ | 8K9Q | 36995 | 2024-04-06 | 2023-08-01 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7549 | 927 | 2 | 0 | 5 | 0 | 0 | logfile |
✘ | 8FC8 | 28976 | 2024-04-16 | 2022-12-01 | 3.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39152 | 2468 | 8 | 0 | 8 | 0 | 19384 | logfile |
✔ | 8BYi | 16326 | 2024-04-08 | 2022-12-13 | 4.1 | 3.68 | 3.94 | 4.0 | 0.009 | 0.72 | 0.0 | 0.21 | 12.07 | 0.00 | 2.132 | 24.08 | 0.00 | 2.3 | 97.7 | 0.0 | 1.89 | 0.61 | 0.78 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 11.52 | 0.00 | 2.230 | 12.03 | 0.00 | 4.0 | 96.0 | 0.0 | -0.32 | 1.14 | 0.64 | 0.80 | — | 13031 | 1600 | 15 | 0 | 12 | 9 | 0 | logfile |
✘ | 5X1G | 6701 | 2024-04-05 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Y8A | 33683 | 2024-04-05 | 2022-06-23 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53404 | 4518 | 49 | 0 | 502 | 0 | 0 | logfile |
✔ | 8RHN | 19177 | 2024-04-16 | 2023-12-15 | 4.5 | 4.44 | 4.58 | 4.1 | 0.006 | 0.80 | 2.0 | 0.05 | 14.00 | 0.01 | 1.290 | 11.68 | 0.00 | 12.9 | 87.0 | 0.1 | -4.53 | 0.80 | 0.73 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 14.12 | 0.00 | 2.034 | 4.83 | 0.00 | 7.4 | 92.6 | 0.0 | -0.39 | 1.25 | 0.80 | 0.72 | — | 38368 | 4976 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8oiP | 16895 | 2024-04-11 | 2023-03-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72369 | 6162 | 47 | 1041 | 144 | 3 | 0 | logfile |
✔ | 7U2X | 26321 | 2024-04-10 | 2022-02-25 | 4.1 | 4.25 | — | 4.2 | 0.005 | 0.65 | 0.0 | 0.04 | 13.56 | 0.01 | 2.118 | 7.47 | 0.81 | 4.5 | 95.5 | 0.0 | -0.17 | 0.46 | 0.78 | — | 4.2 | 0.006 | 0.71 | 0.0 | 0.05 | 13.70 | 0.00 | 2.109 | 10.49 | 0.06 | 5.2 | 94.8 | 0.0 | 0.35 | 0.55 | 0.48 | 0.79 | — | 19480 | 2753 | 10 | 0 | 16 | 0 | 0 | logfile |
✔ | 7oU2 | 13073 | 2024-04-07 | 2021-06-11 | 4.8 | 4.23 | — | 2.6 | 0.013 | 1.80 | 4.0 | 0.12 | 14.07 | 0.01 | 2.465 | 5.22 | 0.09 | 1.3 | 98.7 | 0.0 | 1.53 | 0.85 | 0.64 | — | 2.3 | 0.005 | 0.84 | 0.0 | 0.05 | 14.18 | 0.01 | 2.121 | 30.14 | 0.09 | 3.8 | 96.2 | 0.0 | -0.39 | 1.68 | 0.89 | 0.72 | — | 10798 | 1371 | 4 | 0 | 2 | 0 | 0 | logfile |