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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6JEo | 9807 | 2024-04-14 | 2019-02-06 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✔ | 8UU5 | 42557 | 2024-04-14 | 2023-10-31 | 3.0 | 3.24 | 3.01 | 3.2 | 0.003 | 0.55 | 0.0 | 0.03 | 22.72 | 0.01 | 1.894 | 6.67 | 0.02 | 4.9 | 95.0 | 0.1 | -1.12 | 0.82 | 0.86 | 3.58 | 3.2 | 0.002 | 0.56 | 0.0 | 0.03 | 22.69 | 0.00 | 1.157 | 6.48 | 2.61 | 4.7 | 95.2 | 0.1 | -0.46 | 0.22 | 0.84 | 0.91 | 3.13 | 140861 | 5298 | 88 | 4627 | 494 | 323 | 0 | logfile |
✔ | 8EKC | 28197 | 2024-04-16 | 2022-09-20 | 2.7 | 3.48 | 2.73 | 3.0 | 0.008 | 0.76 | 0.0 | 0.04 | 22.20 | 0.02 | 1.894 | 3.55 | 0.00 | 4.1 | 95.9 | 0.0 | -1.10 | 0.88 | 0.84 | 3.57 | 3.0 | 0.005 | 0.71 | 0.0 | 0.04 | 22.22 | 0.01 | 1.757 | 7.07 | 3.63 | 4.1 | 95.9 | 0.0 | -0.07 | 0.44 | 0.91 | 0.92 | 2.95 | 144544 | 5558 | 88 | 4655 | 719 | 300 | 0 | logfile |
✘ | 8G7S | 29822 | 2024-04-16 | 2023-02-16 | 3.1 | 3.84 | 3.12 | 3.3 | 0.007 | 0.63 | 0.0 | 0.04 | 22.60 | 0.02 | 1.438 | 5.30 | 0.02 | 4.1 | 95.8 | 0.0 | -1.21 | 0.83 | 0.76 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145316 | 5551 | 86 | 4703 | 570 | 219 | 0 | logfile |
✘ | 6TRD | 10559 | 2024-04-11 | 2019-12-18 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 74991 | 6849 | 84 | 0 | 402 | 51 | 0 | logfile |
✔ | 6QC3 | 4495 | 2024-04-14 | 2018-12-26 | 4.2 | 4.28 | 4.21 | 4.2 | 0.010 | 1.32 | 1.0 | 0.85 | 12.18 | 0.01 | 1.873 | 8.18 | 0.75 | 11.7 | 88.1 | 0.1 | -3.94 | 0.67 | 0.75 | — | 4.2 | 0.007 | 1.49 | 0.0 | 0.26 | 13.53 | 0.01 | 1.273 | 18.28 | 0.08 | 10.6 | 89.3 | 0.0 | -1.28 | 1.75 | 0.69 | 0.78 | — | 96897 | 12010 | 84 | 0 | 77 | 0 | 0 | logfile |
✔ | 6QC2 | 4494 | 2024-04-14 | 2018-12-26 | 4.2 | 4.29 | 4.30 | 4.2 | 0.009 | 1.24 | 1.0 | 0.85 | 11.95 | 0.01 | 1.942 | 7.58 | 0.57 | 11.4 | 88.5 | 0.1 | -3.91 | 0.69 | 0.76 | — | 4.2 | 0.007 | 1.47 | 0.0 | 0.26 | 13.56 | 0.01 | 1.966 | 16.65 | 0.02 | 9.0 | 91.0 | 0.0 | -1.14 | 0.98 | 0.70 | 0.78 | — | 96938 | 12000 | 83 | 0 | 93 | 0 | 0 | logfile |
✔ | 6QBX | 4493 | 2024-04-14 | 2018-12-24 | 4.2 | 4.27 | 4.22 | 4.2 | 0.007 | 1.16 | 0.0 | 0.85 | 11.44 | 0.01 | 1.997 | 7.12 | 0.40 | 11.2 | 88.6 | 0.1 | -3.98 | 0.64 | 0.71 | — | 4.2 | 0.007 | 1.46 | 1.0 | 0.26 | 13.52 | 0.01 | 1.761 | 16.60 | 0.05 | 9.6 | 90.4 | 0.0 | -1.24 | 1.00 | 0.65 | 0.74 | — | 97049 | 12043 | 83 | 0 | 73 | 0 | 0 | logfile |
✔ | 8DVD | 27735 | 2024-04-10 | 2022-07-28 | 4.12 | 4.71 | 4.34 | 4.3 | 0.007 | 1.07 | 0.0 | 0.07 | 24.44 | 0.00 | 1.932 | 5.05 | 0.69 | 8.0 | 91.9 | 0.1 | -0.76 | 0.79 | 0.74 | — | 4.3 | 0.004 | 0.86 | 0.0 | 0.05 | 13.19 | 0.00 | 2.213 | 12.99 | 0.05 | 8.6 | 91.3 | 0.1 | -1.24 | 1.76 | 0.84 | 0.81 | — | 20804 | 2137 | 83 | 0 | 302 | 0 | 0 | logfile |
✘ | 7F9o | 31498 | 2024-04-08 | 2021-07-04 | 4.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106329 | 11553 | 82 | 0 | 461 | 0 | 0 | logfile |
✔ | 6RD4 | 4805 | 2024-04-05 | 2019-04-12 | 2.9 | 2.95 | — | 2.9 | 0.014 | 1.11 | 0.0 | 0.07 | 14.33 | 0.01 | 0.776 | 6.62 | 0.69 | 4.7 | 95.0 | 0.2 | -5.13 | 0.74 | 0.83 | 3.17 | 2.9 | 0.004 | 0.68 | 0.0 | 0.04 | 16.42 | 0.00 | 1.875 | 10.03 | 2.17 | 3.6 | 96.3 | 0.1 | 0.67 | 0.62 | 0.77 | 0.87 | 2.82 | 107552 | 14206 | 82 | 0 | 22 | 56 | 0 | logfile |
✔ | 7JSV | 22460 | 2024-04-11 | 2020-08-16 | 3.9 | 3.98 | — | 4.0 | 0.020 | 2.10 | 0.0 | 0.10 | 14.87 | 0.01 | 2.348 | 6.75 | 0.00 | 0.0 | 100.0 | 0.0 | 1.16 | 0.61 | 0.80 | 2.43 | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 16.95 | 0.00 | 2.184 | 12.49 | 2.49 | 1.0 | 99.0 | 0.0 | -0.37 | 0.91 | 0.64 | 0.83 | 2.70 | 22140 | 2706 | 82 | 0 | 41 | 0 | 0 | logfile |
✔ | 6CDE | 7459 | 2024-04-14 | 2018-02-08 | 3.8 | 4.08 | — | 3.9 | 0.008 | 1.11 | 0.0 | 0.10 | 17.58 | 0.01 | 1.655 | 8.88 | 0.21 | 6.0 | 94.0 | 0.0 | -3.29 | 0.77 | 0.84 | 3.13 | 3.9 | 0.005 | 0.74 | 0.0 | 0.05 | 13.46 | 0.00 | 2.095 | 10.47 | 2.46 | 5.1 | 94.9 | 0.0 | -1.23 | 0.68 | 0.78 | 0.86 | 2.81 | 32973 | 3846 | 81 | 0 | 222 | 0 | 0 | logfile |
✔ | 6QC4 | 4496 | 2024-04-14 | 2018-12-26 | 4.6 | 4.73 | 4.64 | 4.6 | 0.006 | 1.11 | 0.0 | 0.85 | 11.13 | 0.01 | 1.949 | 7.33 | 0.38 | 10.8 | 89.0 | 0.1 | -3.76 | 0.73 | 0.75 | — | 4.6 | 0.008 | 1.47 | 0.0 | 0.26 | 12.88 | 0.01 | 1.806 | 20.64 | 0.04 | 10.1 | 89.8 | 0.0 | -1.08 | 2.19 | 0.75 | 0.79 | — | 96705 | 12008 | 81 | 0 | 85 | 0 | 0 | logfile |
✔ | 8QCQ | 18332 | 2024-04-12 | 2023-08-28 | 2.3 | 1.84 | 2.25 | 2.1 | 0.008 | 1.70 | 1.0 | 0.11 | 22.83 | 0.02 | 1.275 | 0.82 | 1.07 | 4.6 | 95.1 | 0.2 | -2.32 | 0.58 | 0.76 | 4.42 | 2.0 | 0.007 | 1.00 | 0.0 | 0.05 | 23.60 | 0.01 | 1.590 | 10.38 | 2.61 | 4.8 | 95.2 | 0.1 | -1.19 | 0.92 | 0.66 | 0.78 | 4.21 | 136664 | 4822 | 81 | 4550 | 247 | 1022 | 0 | logfile |
✔ | 8QBT | 18320 | 2024-04-14 | 2023-08-25 | 2.2 | 1.69 | 2.17 | 1.9 | 0.008 | 1.71 | 6.0 | 0.11 | 22.93 | 0.02 | 1.281 | 0.93 | 0.91 | 5.5 | 94.3 | 0.2 | -2.11 | 0.50 | 0.69 | 4.39 | 1.7 | 0.006 | 1.01 | 0.0 | 0.05 | 23.55 | 0.01 | 1.735 | 9.74 | 3.70 | 5.4 | 94.5 | 0.1 | -1.21 | 0.92 | 0.58 | 0.73 | 4.38 | 141132 | 4848 | 81 | 4738 | 376 | 1239 | 0 | logfile |
✔ | 6CDi | 7460 | 2024-04-14 | 2018-02-08 | 3.6 | 3.90 | — | 3.6 | 0.008 | 1.06 | 0.0 | 0.10 | 16.87 | 0.01 | 1.461 | 7.85 | 0.45 | 5.9 | 94.0 | 0.1 | -3.25 | 0.84 | 0.84 | 2.59 | 3.6 | 0.003 | 0.84 | 0.0 | 0.05 | 13.54 | 0.00 | 2.086 | 10.78 | 2.77 | 6.7 | 93.3 | 0.0 | -0.89 | 1.76 | 0.85 | 0.86 | 2.47 | 32763 | 3843 | 81 | 0 | 210 | 0 | 0 | logfile |
✘ | 7AM2 | 11821 | 2024-04-14 | 2020-10-07 | 3.4 | 3.52 | — | 3.4 | 0.009 | 0.95 | 43.0 | 0.07 | 21.09 | 0.01 | 1.157 | 23.90 | 8.65 | 15.0 | 84.3 | 0.7 | -5.47 | 0.64 | 0.76 | 1.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139523 | 15384 | 80 | 839 | 42 | 0 | 0 | logfile |
✔ | 7M4Y | 23670 | 2024-04-13 | 2021-03-22 | 2.5 | 1.72 | — | 1.5 | 0.006 | 0.58 | 2.0 | 0.03 | 23.65 | 0.02 | 1.783 | 3.47 | 2.14 | 2.5 | 97.3 | 0.2 | 1.41 | 0.77 | 0.73 | 3.74 | 1.5 | 0.004 | 0.73 | 0.0 | 0.04 | 23.26 | 0.01 | 1.694 | 4.89 | 2.97 | 2.9 | 97.0 | 0.1 | 0.55 | 0.29 | 0.79 | 0.77 | 3.74 | 139817 | 5511 | 80 | 4453 | 200 | 1044 | 0 | logfile |
✔ | 8FAE | 28954 | 2024-04-09 | 2022-11-26 | 3.8 | 4.20 | 3.79 | 3.9 | 0.013 | 1.72 | 7.0 | 0.12 | 24.79 | 0.03 | 2.228 | 8.50 | 5.71 | 8.5 | 90.6 | 0.9 | -1.70 | 0.74 | 0.64 | 1.10 | 4.0 | 0.004 | 0.81 | 0.0 | 0.05 | 13.27 | 0.00 | 2.051 | 12.21 | 3.01 | 6.8 | 93.1 | 0.1 | -0.95 | 0.87 | 0.81 | 0.81 | 1.15 | 17693 | 1832 | 79 | 0 | 250 | 0 | 0 | logfile |