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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8DZQ | 27805 | 2024-04-06 | 2022-08-08 | 2.82 | 2.18 | 2.79 | 2.1 | 0.019 | 0.79 | 0.0 | 0.11 | 13.38 | 0.00 | 2.244 | 6.40 | 0.23 | 6.2 | 93.8 | 0.0 | -0.46 | 0.74 | 0.71 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8342 | 1100 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6U5K | 20648 | 2024-04-06 | 2019-08-27 | 3.5 | 3.54 | — | 3.5 | 0.005 | 0.78 | 0.0 | 0.05 | 12.14 | 0.01 | 2.210 | 5.29 | 3.00 | 7.0 | 93.0 | 0.0 | -5.23 | 0.53 | 0.83 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110106 | 14520 | 54 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PLT | 20375 | 2024-04-08 | 2019-07-01 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14445 | 1725 | 15 | 0 | 60 | 0 | 0 | logfile |
✘ | 7VFS | 31958 | 2024-04-10 | 2021-09-13 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19764 | 2383 | 8 | 0 | 41 | 0 | 0 | logfile |
✘ | 7UY7 | 26866 | 2024-04-09 | 2022-05-06 | 4.2 | 4.18 | 4.04 | 3.2 | 0.002 | 0.56 | 1.0 | 0.04 | 15.12 | 0.00 | 2.203 | 13.96 | 0.18 | 3.8 | 96.2 | 0.0 | -0.53 | 0.73 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15161 | 1808 | 7 | 10 | 1 | 0 | 0 | logfile |
✘ | 7JSS | 22459 | 2024-04-16 | 2020-08-15 | 3.7 | 4.06 | 4.04 | 3.8 | 0.007 | 0.93 | 0.0 | 0.08 | 22.22 | 0.01 | 2.171 | 15.39 | 0.60 | 12.4 | 86.1 | 1.5 | -4.45 | 0.81 | 0.78 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144890 | 5749 | 54 | 4655 | 0 | 0 | 0 | logfile |
✘ | 8AP7 | 15560 | 2024-04-11 | 2022-08-09 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71474 | 4076 | 58 | 0 | 44 | 24 | 33618 | logfile |
✘ | 7M3N | 23658 | 2024-04-05 | 2021-03-18 | 2.4 | 2.15 | 2.40 | 1.9 | 0.005 | 0.63 | 0.0 | 0.04 | 15.95 | 0.00 | 2.168 | 5.79 | 4.28 | 4.3 | 95.6 | 0.1 | -2.53 | 0.43 | 0.82 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6004 | 759 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 5Y88 | 6817 | 2024-04-10 | 2017-08-20 | 3.46 | 3.56 | — | 3.5 | 0.011 | 1.45 | 25.0 | 0.11 | 17.41 | 0.01 | 1.112 | 25.56 | 5.35 | 6.2 | 92.6 | 1.2 | -2.93 | 0.54 | 0.64 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72347 | 9113 | 50 | 337 | 14 | 0 | 0 | logfile |
✘ | 8APA | 15563 | 2024-04-10 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 7L20 | 23121 | 2024-04-06 | 2020-12-15 | 3.15 | 3.39 | — | 3.4 | 0.007 | 0.87 | 0.0 | 0.05 | 20.07 | 0.01 | 0.505 | 10.97 | 0.84 | 7.3 | 92.2 | 0.5 | -3.38 | 0.69 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110234 | 9454 | 67 | 1583 | 171 | 0 | 0 | logfile |
✘ | 6Ji0 | 9831 | 2024-04-06 | 2019-02-19 | 4.2 | 4.40 | — | 4.2 | 0.007 | 1.15 | 0.0 | 0.06 | 11.78 | 0.01 | 2.204 | 7.43 | 0.86 | 12.9 | 86.9 | 0.3 | -4.44 | 0.73 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109772 | 14332 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 6PV6 | 20486 | 2024-04-09 | 2019-07-19 | 4.5 | 5.79 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.05 | 10.65 | 0.01 | 1.373 | 9.47 | 0.31 | 11.0 | 88.9 | 0.1 | -4.72 | 0.60 | 0.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2024-04-15 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.80 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✘ | 7WG5 | 32477 | 2024-04-06 | 2021-12-28 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112687 | 11759 | 92 | 0 | 545 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2024-04-06 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7SPC | 24770 | 2024-04-13 | 2021-11-02 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7P00 | 13140 | 2024-04-06 | 2021-06-29 | 2.71 | 2.90 | — | 3.0 | 0.012 | 1.68 | 8.0 | 0.11 | 12.35 | 0.01 | 2.236 | 4.97 | 0.81 | 3.4 | 96.6 | 0.0 | -0.50 | 0.68 | 0.82 | 3.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9110 | 1144 | 7 | 0 | 2 | 0 | 0 | logfile |
✘ | 7UoM | 26650 | 2024-04-16 | 2022-04-13 | 3.8 | 4.15 | 3.96 | 3.9 | 0.002 | 0.65 | 0.0 | 0.04 | 13.35 | 0.00 | 2.256 | 7.12 | 0.09 | 1.5 | 98.5 | 0.0 | 1.04 | 0.84 | 0.87 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | 1.86 | — | — | — | 1.18 | 104640 | 13560 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DBY | 27317 | 2024-04-09 | 2022-06-15 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16794 | 1998 | 12 | 0 | 8 | 770 | 0 | logfile |