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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8SAW | 40282 | 2024-04-16 | 2023-04-02 | 3.3 | 3.50 | 3.30 | 3.5 | 0.004 | 0.65 | 0.0 | 0.05 | 12.11 | 0.00 | 2.116 | 2.03 | 1.27 | 3.1 | 96.8 | 0.1 | -0.32 | 0.66 | 0.73 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38332 | 2463 | 24 | 0 | 48 | 0 | 18589 | logfile |
✘ | 6S0Z | 10077 | 2024-04-17 | 2019-06-18 | 2.3 | 2.39 | — | 2.4 | 0.006 | 0.80 | 0.0 | 0.06 | 23.76 | 0.00 | 2.007 | 2.91 | 6.96 | 7.1 | 92.8 | 0.0 | -2.89 | 0.62 | 0.73 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145796 | 3106 | 31 | 3019 | 1 | 0 | 57218 | logfile |
✘ | 7QHo | 13977 | 2024-04-14 | 2021-12-13 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93446 | 5870 | 54 | 0 | 78 | 10 | 44952 | logfile |
✘ | 6QCM | 4508 | 2024-04-05 | 2018-12-28 | 4.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6PoD | 20412 | 2024-04-05 | 2019-07-03 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53637 | 3427 | 20 | 0 | 25 | 0 | 26898 | logfile |
✘ | 7NKJ | 12441 | 2024-04-17 | 2021-02-18 | 2.17 | 2.16 | — | 2.1 | 0.005 | 0.59 | 0.0 | 0.05 | 17.26 | 0.00 | 1.958 | 2.88 | 1.05 | 1.8 | 98.2 | 0.1 | 1.04 | 0.80 | 0.89 | 6.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45605 | 2945 | 20 | 0 | 11 | 516 | 22478 | logfile |
✘ | 7WLM | 32588 | 2024-04-06 | 2022-01-13 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7308 | 603 | 9 | 0 | 51 | 54 | 0 | logfile |
✘ | 8ALZ | 15521 | 2024-04-09 | 2022-08-01 | 3.4 | 4.20 | 3.41 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 16.77 | 0.01 | 2.204 | 15.40 | 0.39 | 4.5 | 95.4 | 0.0 | -0.91 | 0.90 | 0.78 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16409 | 2041 | 3 | 0 | 2 | 0 | 0 | logfile |
✘ | 7XT9 | 33443 | 2024-04-09 | 2022-05-16 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14875 | 927 | 4 | 0 | 7 | 0 | 7351 | logfile |
✘ | 7DZ7 | 30925 | 2024-04-10 | 2021-01-23 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69647 | 5998 | 55 | 0 | 471 | 0 | 0 | logfile |
✘ | 7N4E | 24148 | 2024-04-13 | 2021-06-04 | 3.8 | 3.85 | — | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 17.76 | 0.01 | 1.705 | 13.32 | 3.45 | 4.3 | 95.7 | 0.0 | -0.65 | 0.78 | 0.77 | 1.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29822 | 3559 | 10 | 89 | 3 | 0 | 0 | logfile |
✘ | 3JBW | 6489 | 2024-04-16 | 2015-10-21 | 4.6 | 4.71 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 21.90 | 0.01 | 1.977 | 22.69 | 4.88 | 5.6 | 93.6 | 0.9 | -3.37 | 0.75 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19997 | 1946 | 12 | 222 | 2 | 0 | 0 | logfile |
✘ | 7YDY | 33760 | 2024-04-14 | 2022-07-04 | 4.75 | 4.05 | 4.60 | 4.0 | 0.002 | 0.45 | 0.0 | 0.04 | 10.39 | 0.00 | 2.253 | 5.17 | 0.44 | 3.1 | 96.9 | 0.0 | -3.89 | 0.68 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28760 | 3638 | 14 | 0 | 36 | 0 | 0 | logfile |
✘ | 7MDY | 23784 | 2024-04-10 | 2021-04-06 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19595 | 1263 | 6 | 0 | 4 | 0 | 9862 | logfile |
✘ | 7DCC | 30635 | 2024-04-15 | 2020-10-24 | 4.3 | 4.77 | — | 4.1 | 0.002 | 0.48 | 0.0 | 0.04 | 7.38 | 0.00 | 2.279 | 3.10 | 1.39 | 2.3 | 97.7 | 0.0 | -4.06 | 0.73 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35019 | 4485 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 6S8N | 10125 | 2024-04-06 | 2019-07-10 | 3.1 | 3.26 | — | 3.3 | 0.012 | 1.73 | 0.0 | 0.06 | 16.96 | 0.01 | 1.791 | 6.47 | 0.12 | 8.7 | 91.1 | 0.2 | -6.61 | 0.69 | 0.82 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7831 | 970 | 8 | 0 | 7 | 0 | 0 | logfile |
✘ | 8EAM | 27981 | 2024-04-12 | 2022-08-29 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24218 | 3008 | 17 | 9 | 14 | 12 | 0 | logfile |
✘ | 6AB5 | 6999 | 2024-04-14 | 2018-07-20 | 3.7 | 3.79 | — | 3.7 | 0.007 | 0.96 | 6.0 | 0.06 | 11.27 | 0.01 | 1.686 | 24.89 | 0.75 | 5.6 | 94.4 | 0.0 | -3.80 | 0.85 | 0.86 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139740 | 18180 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CW9 | 27024 | 2024-04-14 | 2022-05-18 | 3.46 | 2.48 | — | 2.2 | 0.002 | 0.67 | 0.0 | 0.05 | 13.45 | 0.01 | 2.196 | 3.46 | 1.25 | 5.7 | 94.1 | 0.1 | -1.23 | 0.74 | 0.73 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20229 | 2658 | 18 | 0 | 3 | 0 | 0 | logfile |
✘ | 7W02 | 32234 | 2024-04-08 | 2021-11-17 | 3.3 | 3.44 | — | 3.4 | 0.007 | 0.89 | 0.0 | 0.05 | 15.17 | 0.00 | 1.892 | 7.36 | 0.23 | 10.9 | 89.1 | 0.1 | -3.18 | 0.68 | 0.87 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12326 | 1566 | 1 | 0 | 6 | 0 | 0 | logfile |