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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GUP | 9539 | 2024-04-06 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✘ | 8EAG | 27975 | 2024-04-12 | 2022-08-29 | 3.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24218 | 3008 | 17 | 9 | 14 | 12 | 0 | logfile |
✘ | 6PP5 | 20419 | 2024-04-14 | 2019-07-05 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32118 | 2063 | 13 | 0 | 18 | 0 | 16112 | logfile |
✘ | 7WSi | 32759 | 2024-04-05 | 2022-01-29 | 3.32 | 3.90 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 12.25 | 0.00 | 2.122 | 8.82 | 0.00 | 7.9 | 92.1 | 0.0 | -0.23 | 0.66 | 0.77 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5701 | 743 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6F1T | 4168 | 2024-04-14 | 2017-11-23 | 3.5 | 3.80 | — | 3.5 | 0.011 | 1.43 | 0.0 | 0.07 | 10.01 | 0.01 | 1.456 | 9.09 | 0.44 | 10.8 | 89.1 | 0.2 | -4.05 | 0.76 | 0.63 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92795 | 11785 | 55 | 0 | 2212 | 0 | 0 | logfile |
✘ | 7E0J | 30934 | 2024-04-06 | 2021-01-28 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8140 | 672 | 6 | 0 | 56 | 0 | 0 | logfile |
✘ | 8EFB | 28077 | 2024-04-06 | 2022-09-08 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8947 | 1136 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7D1T | 30547 | 2024-04-05 | 2020-09-15 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✘ | 6HiN | 0225 | 2024-04-08 | 2018-08-30 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14220 | 1675 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 6PP7 | 20421 | 2024-04-14 | 2019-07-05 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32499 | 2081 | 13 | 0 | 25 | 0 | 16296 | logfile |
✘ | 6RBD | 4792 | 2024-04-12 | 2019-04-10 | 3.47 | 3.74 | 3.51 | 2.5 | 0.006 | 0.97 | 0.0 | 0.05 | 22.06 | 0.01 | 2.223 | 6.31 | 0.28 | 5.3 | 94.6 | 0.0 | -3.01 | 0.90 | 0.81 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81048 | 5450 | 35 | 1777 | 0 | 0 | 0 | logfile |
✘ | 6JEo | 9807 | 2024-04-14 | 2019-02-06 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✘ | 3JBW | 6489 | 2024-04-16 | 2015-10-21 | 4.6 | 4.71 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 21.90 | 0.01 | 1.977 | 22.69 | 4.88 | 5.6 | 93.6 | 0.9 | -3.37 | 0.75 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19997 | 1946 | 12 | 222 | 2 | 0 | 0 | logfile |
✘ | 8SAW | 40282 | 2024-04-16 | 2023-04-02 | 3.3 | 3.50 | 3.30 | 3.5 | 0.004 | 0.65 | 0.0 | 0.05 | 12.11 | 0.00 | 2.116 | 2.03 | 1.27 | 3.1 | 96.8 | 0.1 | -0.32 | 0.66 | 0.73 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38332 | 2463 | 24 | 0 | 48 | 0 | 18589 | logfile |
✘ | 6VL5 | 21230 | 2024-04-09 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 11.99 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 6R93 | 4767 | 2024-04-11 | 2019-04-02 | 4.0 | 4.29 | — | 4.1 | 0.010 | 1.48 | 2.0 | 0.10 | 29.02 | 0.01 | 1.600 | 2.04 | 0.00 | 2.5 | 97.0 | 0.5 | 0.30 | 0.78 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22961 | 775 | 10 | 290 | 0 | 0 | 10123 | logfile |
✘ | 7QHo | 13977 | 2024-04-14 | 2021-12-13 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93446 | 5870 | 54 | 0 | 78 | 10 | 44952 | logfile |
✘ | 6L4U | 0835 | 2024-04-07 | 2019-10-21 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62199 | 5075 | 72 | 0 | 557 | 156 | 0 | logfile |
✘ | 7BKD | 12210 | 2024-04-12 | 2021-01-15 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24799 | 3177 | 18 | 0 | 26 | 0 | 0 | logfile |
✘ | 7D72 | 30599 | 2024-04-15 | 2020-10-02 | 3.4 | 3.58 | — | 3.5 | 0.009 | 1.23 | 4.0 | 0.07 | 17.32 | 0.01 | 1.640 | 10.15 | 8.56 | 4.9 | 94.8 | 0.2 | -2.44 | 0.74 | 0.83 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35458 | 4505 | 27 | 0 | 15 | 6 | 0 | logfile |