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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8i6S | 35205 | 2024-04-06 | 2023-01-29 | 4.4 | 4.82 | 4.39 | 4.4 | 0.006 | 1.39 | 2.0 | 0.06 | 16.40 | 0.01 | 2.073 | 4.55 | 0.97 | 4.1 | 95.7 | 0.2 | -5.18 | 0.73 | 0.60 | — | 4.4 | 0.002 | 0.67 | 0.0 | 0.04 | 16.01 | 0.00 | 1.979 | 12.45 | 1.08 | 3.7 | 96.2 | 0.1 | -0.07 | 0.51 | 0.74 | 0.63 | — | 8641 | 1125 | 7 | 0 | 4 | 0 | 0 | logfile |
✘ | 8GFA | 29983 | 2024-04-16 | 2023-03-07 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36679 | 2124 | 12 | 0 | 46 | 105 | 17380 | logfile |
✘ | 7WT7 | 32770 | 2024-04-13 | 2022-02-04 | 3.4 | 3.87 | — | 3.8 | 0.005 | 0.92 | 15.0 | 0.06 | 14.36 | 0.01 | 2.132 | 9.81 | 0.91 | 7.1 | 92.6 | 0.3 | -1.79 | 0.78 | 0.77 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28322 | 3523 | 12 | 0 | 50 | 0 | 0 | logfile |
✔ | 7WBV | 32407 | 2024-04-14 | 2021-12-17 | 4.1 | 4.41 | — | 4.0 | 0.004 | 0.62 | 0.0 | 0.04 | 18.95 | 0.00 | 1.842 | 12.31 | 0.00 | 5.9 | 94.1 | 0.1 | -0.61 | 0.80 | 0.73 | — | 4.0 | 0.004 | 0.63 | 0.0 | 0.04 | 19.33 | 0.00 | 1.847 | 14.41 | 0.00 | 8.6 | 91.3 | 0.1 | -1.22 | 0.48 | 0.80 | 0.72 | — | 92340 | 5125 | 34 | 329 | 11 | 0 | 44823 | logfile |
✘ | 7ZRZ | 14923 | 2024-04-06 | 2022-05-05 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 8BYi | 16326 | 2024-04-08 | 2022-12-13 | 4.1 | 3.68 | 3.94 | 4.0 | 0.009 | 0.72 | 0.0 | 0.21 | 12.07 | 0.00 | 2.132 | 24.08 | 0.00 | 2.3 | 97.7 | 0.0 | 1.89 | 0.61 | 0.78 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 11.52 | 0.00 | 2.230 | 12.03 | 0.00 | 4.0 | 96.0 | 0.0 | -0.32 | 1.14 | 0.64 | 0.80 | — | 13031 | 1600 | 15 | 0 | 12 | 9 | 0 | logfile |
✔ | 7WLB | 32580 | 2024-04-07 | 2022-01-12 | 4.1 | 3.63 | — | 3.5 | 0.002 | 0.44 | 0.0 | 0.04 | 8.68 | 0.00 | 2.205 | 6.88 | 3.92 | 4.5 | 95.5 | 0.0 | -4.05 | 0.74 | 0.72 | — | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 11.24 | 0.00 | 2.157 | 18.00 | 0.00 | 6.4 | 93.5 | 0.1 | -0.65 | 1.45 | 0.75 | 0.75 | — | 10193 | 1327 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8QN6 | 18508 | 2024-04-14 | 2023-09-25 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32010 | 4180 | 110 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AFL | 15401 | 2024-04-05 | 2022-07-18 | 4.4 | 3.03 | 4.24 | 2.2 | 0.004 | 0.74 | 0.0 | 0.04 | 15.27 | 0.00 | 2.153 | 18.68 | 0.25 | 8.4 | 91.6 | 0.0 | -3.48 | 0.59 | 0.59 | — | 2.1 | 0.004 | 0.73 | 0.0 | 0.04 | 15.42 | 0.00 | 2.158 | 16.25 | 0.00 | 6.5 | 93.5 | 0.0 | -1.48 | 0.80 | 0.59 | 0.59 | — | 3921 | 505 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CU8 | 26996 | 2024-04-15 | 2022-05-16 | 1.91 | 2.52 | 1.91 | 2.2 | 0.005 | 0.65 | 0.0 | 0.05 | 13.91 | 0.01 | 2.043 | 0.74 | 0.00 | 0.6 | 99.4 | 0.0 | 1.28 | 0.87 | 0.93 | 5.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35271 | 4032 | 72 | 0 | 24 | 2271 | 0 | logfile |
✘ | 8FWB | 29500 | 2024-04-15 | 2023-01-20 | 3.14 | 3.48 | 3.19 | 3.6 | 0.005 | 0.83 | 0.0 | 0.05 | 15.00 | 0.00 | 2.237 | 11.31 | 2.57 | 12.8 | 87.2 | 0.0 | -3.49 | 0.48 | 0.84 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35256 | 4572 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 3A5X | 1641 | 2024-04-05 | 2009-08-13 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3616 | 494 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZPo | 14859 | 2024-04-09 | 2022-04-28 | 3.24 | 2.81 | 3.17 | 3.1 | 0.004 | 0.73 | 0.0 | 0.05 | 16.16 | 0.00 | 2.053 | 10.37 | 0.00 | 1.3 | 98.7 | 0.0 | 1.71 | 0.65 | 0.82 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15102 | 1932 | 20 | 0 | 16 | 0 | 0 | logfile |
✔ | 8E5T | 27919 | 2024-04-06 | 2022-08-22 | 4.0 | 4.14 | 3.98 | 3.7 | 0.003 | 0.68 | 0.0 | 0.06 | 21.12 | 0.00 | 1.971 | 4.00 | 0.00 | 3.7 | 96.2 | 0.1 | -0.03 | 0.73 | 0.63 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 21.62 | 0.00 | 2.001 | 12.41 | 2.56 | 4.2 | 95.7 | 0.1 | 0.68 | 1.53 | 0.71 | 0.66 | — | 55125 | 5158 | 32 | 968 | 34 | 0 | 0 | logfile |
✘ | 8oiT | 16899 | 2024-04-07 | 2023-03-23 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113095 | 9412 | 79 | 1704 | 265 | 0 | 0 | logfile |
✘ | 7ZTA | 14956 | 2024-04-17 | 2022-05-09 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8DTB | 27695 | 2024-04-08 | 2022-07-25 | 3.14 | 3.27 | 3.11 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 18.08 | 0.00 | 2.175 | 9.05 | 0.99 | 1.9 | 98.1 | 0.0 | 1.18 | 0.66 | 0.74 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13724 | 1765 | 9 | 0 | 7 | 0 | 0 | logfile |
✘ | 8SX9 | 40828 | 2024-04-10 | 2023-05-20 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18596 | 1153 | 1 | 0 | 0 | 0 | 9418 | logfile |
✔ | 7M64 | 23688 | 2024-04-05 | 2021-03-25 | 4.0 | 4.02 | — | 4.3 | 0.008 | 1.15 | 0.0 | 0.07 | 10.07 | 0.00 | 2.451 | 19.77 | 0.00 | 8.7 | 91.3 | 0.0 | -3.84 | 0.52 | 0.75 | — | 4.3 | 0.004 | 0.89 | 0.0 | 0.04 | 11.40 | 0.00 | 2.234 | 7.06 | 0.48 | 5.7 | 94.3 | 0.0 | -4.00 | 1.13 | 0.51 | 0.74 | — | 1850 | 250 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6SKM | 10228 | 2024-04-07 | 2019-08-16 | 4.9 | 5.09 | 4.66 | 4.9 | 0.004 | 0.64 | 0.0 | 0.04 | 9.23 | 0.00 | 1.449 | 9.83 | 0.18 | 1.4 | 98.6 | 0.0 | -1.03 | 0.68 | 0.74 | — | 4.9 | 0.004 | 0.77 | 0.0 | 0.05 | 13.13 | 0.01 | 2.154 | 20.23 | 0.18 | 3.2 | 96.8 | 0.0 | 0.23 | 2.74 | 0.70 | 0.80 | — | 10336 | 1320 | 6 | 0 | 0 | 0 | 0 | logfile |