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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8FoB | 29344 | 2024-04-10 | 2022-12-30 | 2.71 | 2.96 | 2.77 | 3.0 | 0.024 | 1.57 | 0.0 | 0.54 | 21.84 | 0.01 | 2.073 | 8.34 | 0.39 | 8.3 | 91.7 | 0.0 | -5.44 | 0.60 | 0.72 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20390 | 2376 | 12 | 0 | 46 | 52 | 0 | logfile |
✘ | 7ASD | 11892 | 2024-04-14 | 2020-10-27 | 3.5 | 3.68 | 3.48 | 3.5 | 0.003 | 0.68 | 0.0 | 0.06 | 11.93 | 0.00 | 2.153 | 5.28 | 2.16 | 2.2 | 97.8 | 0.0 | 0.30 | 0.81 | 0.83 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30296 | 3664 | 48 | 0 | 72 | 0 | 0 | logfile |
✘ | 8AZU | 15772 | 2024-04-11 | 2022-09-06 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.07 | — | — | 4.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23856 | 3108 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 8D1B | 27121 | 2024-04-06 | 2022-05-27 | 3.57 | 3.85 | 3.45 | 3.8 | 0.006 | 1.09 | 0.0 | 0.05 | 14.42 | 0.01 | 2.084 | 19.71 | 0.28 | 24.1 | 75.9 | 0.0 | -6.32 | 0.76 | 0.81 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6724 | 874 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CBN | 16546 | 2024-04-08 | 2023-01-25 | 3.34 | 3.92 | 3.27 | 3.7 | 0.008 | 0.72 | 0.0 | 0.04 | 25.79 | 0.01 | 0.876 | 6.35 | 2.28 | 4.8 | 95.2 | 0.0 | -5.72 | 0.71 | 0.78 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13669 | 939 | 12 | 300 | 0 | 0 | 0 | logfile |
✘ | 8BVR | 16269 | 2024-04-05 | 2022-12-05 | 3.52 | 4.00 | 3.61 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 17.01 | 0.01 | 2.178 | 12.22 | 0.19 | 4.6 | 95.4 | 0.0 | 0.64 | 0.62 | 0.78 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4806 | 617 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 6TU7 | 10590 | 2024-04-12 | 2020-01-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7YK5 | 33887 | 2024-04-16 | 2022-07-21 | 2.0 | 1.66 | — | 1.9 | 0.014 | 1.49 | 0.0 | 0.09 | 17.33 | 0.00 | 2.157 | 4.91 | 7.75 | 4.0 | 96.0 | 0.0 | -2.45 | 0.38 | 0.48 | 6.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39948 | 5064 | 36 | 0 | 8 | 0 | 0 | logfile |
✘ | 8FD6 | 29003 | 2024-04-11 | 2022-12-02 | 2.9 | 3.18 | 2.95 | 3.2 | 0.007 | 0.74 | 0.0 | 0.05 | 14.43 | 0.00 | 1.835 | 8.75 | 0.16 | 3.8 | 96.2 | 0.0 | 0.39 | 0.64 | 0.73 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22170 | 2747 | 1 | 0 | 6 | 0 | 0 | logfile |
✘ | 8FFZ | 29071 | 2024-04-16 | 2022-12-11 | 3.8 | 3.60 | 3.85 | 3.5 | 0.013 | 1.89 | 17.0 | 0.10 | 18.55 | 0.02 | 2.526 | 0.36 | 0.38 | 5.5 | 94.4 | 0.1 | -1.13 | 0.69 | 0.69 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38962 | 4045 | 11 | 302 | 9 | 0 | 0 | logfile |
✘ | 8Do3 | 27589 | 2024-04-05 | 2022-07-12 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4185 | 534 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8PVi | 17967 | 2024-04-14 | 2023-07-17 | 3.7 | 3.60 | 3.68 | 3.7 | 0.010 | 1.62 | 0.0 | 0.08 | 15.33 | 0.01 | 2.334 | 1.37 | 1.13 | 1.5 | 98.4 | 0.1 | 0.10 | 0.76 | 0.77 | 2.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30696 | 4068 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7SZZ | 25573 | 2024-04-15 | 2021-11-29 | 3.9 | 4.01 | — | 4.0 | 0.007 | 0.62 | 0.0 | 0.03 | 14.38 | 0.00 | 2.505 | 10.59 | 0.00 | 6.5 | 93.5 | 0.0 | -4.42 | 0.72 | 0.86 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 143112 | 17085 | 804 | 0 | 0 | 0 | 0 | logfile |
✘ | 8UXL | 42768 | 2024-04-16 | 2023-11-09 | 3.12 | 4.00 | — | 2.0 | 0.004 | 0.89 | 16.0 | 0.04 | 14.92 | 0.01 | 1.627 | 14.05 | 1.53 | 3.1 | 96.8 | 0.1 | 0.74 | 0.87 | 0.83 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 143500 | 17928 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 8FWB | 29500 | 2024-04-15 | 2023-01-20 | 3.14 | 3.48 | 3.19 | 3.6 | 0.005 | 0.83 | 0.0 | 0.05 | 15.00 | 0.00 | 2.237 | 11.31 | 2.57 | 12.8 | 87.2 | 0.0 | -3.49 | 0.48 | 0.84 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35256 | 4572 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 3A5X | 1641 | 2024-04-05 | 2009-08-13 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3616 | 494 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JPo | 36485 | 2024-04-07 | 2023-06-12 | 3.4 | 3.43 | 3.16 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.94 | 0.00 | 2.267 | 6.38 | 0.00 | 2.8 | 97.2 | 0.0 | 0.44 | 0.75 | 0.90 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11476 | 1466 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 8i5Y | 35198 | 2024-04-08 | 2023-01-26 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13617 | 1565 | 9 | 0 | 39 | 6 | 0 | logfile |
✘ | 8HKU | 34860 | 2024-04-05 | 2022-11-28 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8WC3 | 37429 | 2024-04-06 | 2023-09-11 | 3.0 | 3.02 | 2.90 | 3.0 | 0.007 | 0.95 | 2.0 | 0.07 | 13.95 | 0.01 | 1.356 | 8.37 | 1.40 | 5.2 | 94.8 | 0.0 | -1.08 | 0.66 | 0.73 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8418 | 1119 | 6 | 0 | 1 | 0 | 0 | logfile |